Protein–RNA interactions for Protein: P18827

SDC1, Syndecan-1, humanhuman

Predictions only

Length 310 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1P18827 MS4A1-202ENST00000389939 3372 ntAPPRIS P1 TSL 1 (best) BASIC4.27□□□□□ -1.73
SDC1P18827 DTNA-203ENST00000315456 1706 ntTSL 1 (best) BASIC4.26□□□□□ -1.73
SDC1P18827 LUZP2-207ENST00000533227 5016 ntTSL 1 (best) BASIC4.26□□□□□ -1.73
SDC1P18827 TATDN1-201ENST00000276692 1018 ntAPPRIS P1 TSL 1 (best) BASIC4.26□□□□□ -1.73
SDC1P18827 AC067945.1-201ENST00000342609 618 ntBASIC4.26□□□□□ -1.73
SDC1P18827 DNAJB4-201ENST00000370763 2988 ntAPPRIS P1 TSL 1 (best) BASIC4.26□□□□□ -1.73
SDC1P18827 RNA5SP87-201ENST00000384155 118 ntBASIC4.26□□□□□ -1.73
SDC1P18827 MIR105-2-201ENST00000385083 81 ntBASIC4.26□□□□□ -1.73
SDC1P18827 ESCO2-202ENST00000397418 720 ntTSL 5 BASIC4.26□□□□□ -1.73
SDC1P18827 RN7SKP278-201ENST00000410504 342 ntBASIC4.26□□□□□ -1.73
SDC1P18827 RN7SKP216-201ENST00000411050 312 ntBASIC4.26□□□□□ -1.73
SDC1P18827 AC022022.1-201ENST00000430304 178 ntBASIC4.26□□□□□ -1.73
SDC1P18827 NDUFA5P10-201ENST00000432147 357 ntBASIC4.26□□□□□ -1.73
SDC1P18827 AL049745.1-201ENST00000433953 286 ntBASIC4.26□□□□□ -1.73
SDC1P18827 LPP-AS1-201ENST00000434996 494 ntTSL 3 BASIC4.26□□□□□ -1.73
SDC1P18827 XKRY2-201ENST00000442362 1093 ntBASIC4.26□□□□□ -1.73
SDC1P18827 AL157827.1-201ENST00000447622 132 ntBASIC4.26□□□□□ -1.73
SDC1P18827 AL355870.1-201ENST00000448272 454 ntTSL 3 BASIC4.26□□□□□ -1.73
SDC1P18827 AL365271.1-201ENST00000448909 603 ntTSL 3 BASIC4.26□□□□□ -1.73
SDC1P18827 NPM1P39-201ENST00000449818 867 ntBASIC4.26□□□□□ -1.73
SDC1P18827 HCG17-214ENST00000453558 732 ntTSL 5 BASIC4.26□□□□□ -1.73
SDC1P18827 AC007688.1-201ENST00000475592 759 ntBASIC4.26□□□□□ -1.73
SDC1P18827 AC008638.1-201ENST00000506035 866 ntBASIC4.26□□□□□ -1.73
SDC1P18827 LINC02230-201ENST00000511174 301 ntTSL 5 BASIC4.26□□□□□ -1.73
SDC1P18827 HMGB1P46-201ENST00000520062 610 ntBASIC4.26□□□□□ -1.73
SDC1P18827 OR8X1P-201ENST00000534542 869 ntBASIC4.26□□□□□ -1.73
SDC1P18827 AL359232.1-201ENST00000556361 442 ntTSL 3 BASIC4.26□□□□□ -1.73
SDC1P18827 AC092140.1-201ENST00000563090 549 ntTSL 3 BASIC4.26□□□□□ -1.73
SDC1P18827 AC007906.1-201ENST00000568648 510 ntTSL 5 BASIC4.26□□□□□ -1.73
SDC1P18827 Z98200.1-201ENST00000607298 470 ntBASIC4.26□□□□□ -1.73
SDC1P18827 AL121904.1-201ENST00000611894 948 ntTSL 5 BASIC4.26□□□□□ -1.73
SDC1P18827 AC243585.1-201ENST00000617867 607 ntTSL 3 BASIC4.26□□□□□ -1.73
SDC1P18827 VPS29-212ENST00000621131 1124 ntTSL 3 BASIC4.26□□□□□ -1.73
SDC1P18827 AC244196.2-201ENST00000621184 411 ntAPPRIS P1 BASIC4.26□□□□□ -1.73
SDC1P18827 AC055839.1-201ENST00000634467 498 ntBASIC4.26□□□□□ -1.73
SDC1P18827 THOC2-202ENST00000355725 4930 ntAPPRIS P1 TSL 5 BASIC4.26□□□□□ -1.73
SDC1P18827 AC105074.1-201ENST00000623380 3095 ntBASIC4.26□□□□□ -1.73
SDC1P18827 MARCH1-201ENST00000274056 5367 ntAPPRIS P1 TSL 4 BASIC4.26□□□□□ -1.73
SDC1P18827 EIF2S1-202ENST00000466499 2390 ntAPPRIS P1 TSL 1 (best) BASIC4.26□□□□□ -1.73
SDC1P18827 C17orf78-204ENST00000615133 1862 ntAPPRIS P3 TSL 1 (best) BASIC4.26□□□□□ -1.73
SDC1P18827 NEAT1-202ENST00000501122 22743 ntBASIC4.26□□□□□ -1.73
SDC1P18827 OFD1P6Y-201ENST00000432335 1637 ntTSL 2 BASIC4.25□□□□□ -1.73
SDC1P18827 TTTY9B-201ENST00000433794 1637 ntTSL 2 BASIC4.25□□□□□ -1.73
SDC1P18827 USP34-201ENST00000398571 11357 ntAPPRIS P1 TSL 5 BASIC4.25□□□□□ -1.73
SDC1P18827 MGST1-201ENST00000010404 901 ntAPPRIS P1 TSL 5 BASIC4.25□□□□□ -1.73
SDC1P18827 RNU6ATAC5P-201ENST00000388104 126 ntBASIC4.25□□□□□ -1.73
SDC1P18827 RNA5SP397-201ENST00000391323 118 ntBASIC4.25□□□□□ -1.73
SDC1P18827 NRG4-201ENST00000394907 1159 ntAPPRIS P1 TSL 1 (best) BASIC4.25□□□□□ -1.73
SDC1P18827 MGST1-203ENST00000396207 909 ntAPPRIS P1 TSL 1 (best) BASIC4.25□□□□□ -1.73
SDC1P18827 AC024940.1-203ENST00000398963 4423 ntAPPRIS ALT2 TSL 5 BASIC4.25□□□□□ -1.73
SDC1P18827 ZNF705D-202ENST00000400085 3377 ntAPPRIS P1 TSL 5 BASIC4.25□□□□□ -1.73
SDC1P18827 ARL4A-205ENST00000404894 840 ntAPPRIS P1 TSL 2 BASIC4.25□□□□□ -1.73
SDC1P18827 VN1R8P-201ENST00000407739 893 ntBASIC4.25□□□□□ -1.73
SDC1P18827 RN7SKP106-201ENST00000410832 272 ntBASIC4.25□□□□□ -1.73
SDC1P18827 AL645465.1-201ENST00000417765 642 ntTSL 3 BASIC4.25□□□□□ -1.73
SDC1P18827 AC079760.2-203ENST00000418395 489 ntTSL 3 BASIC4.25□□□□□ -1.73
SDC1P18827 AC244394.2-201ENST00000425109 735 ntTSL 5 BASIC4.25□□□□□ -1.73
SDC1P18827 AP001324.1-201ENST00000428553 399 ntBASIC4.25□□□□□ -1.73
SDC1P18827 ITGA9-AS1-203ENST00000429532 702 ntTSL 5 BASIC4.25□□□□□ -1.73
SDC1P18827 RPEP2-201ENST00000432149 701 ntBASIC4.25□□□□□ -1.73
SDC1P18827 MTND2P21-201ENST00000436242 1042 ntBASIC4.25□□□□□ -1.73
SDC1P18827 AC012442.1-201ENST00000436885 529 ntTSL 4 BASIC4.25□□□□□ -1.73
SDC1P18827 AL035551.1-201ENST00000446931 348 ntBASIC4.25□□□□□ -1.73
SDC1P18827 VN1R32P-201ENST00000452234 905 ntBASIC4.25□□□□□ -1.73
SDC1P18827 RNU6ATAC28P-201ENST00000459249 118 ntBASIC4.25□□□□□ -1.73
SDC1P18827 NECTIN3-AS1-202ENST00000467426 664 ntTSL 3 BASIC4.25□□□□□ -1.73
SDC1P18827 AC092324.1-201ENST00000468671 324 ntBASIC4.25□□□□□ -1.73
SDC1P18827 RPL12P20-201ENST00000475538 479 ntBASIC4.25□□□□□ -1.73
SDC1P18827 IGLV2-34-201ENST00000490007 283 ntBASIC4.25□□□□□ -1.73
SDC1P18827 MTCO1P31-201ENST00000506355 492 ntBASIC4.25□□□□□ -1.73
SDC1P18827 AC021180.1-201ENST00000508581 558 ntTSL 4 BASIC4.25□□□□□ -1.73
SDC1P18827 IGKV1OR2-1-201ENST00000514060 354 ntBASIC4.25□□□□□ -1.73
SDC1P18827 AC024958.1-203ENST00000520256 577 ntTSL 2 BASIC4.25□□□□□ -1.73
SDC1P18827 NRG1-IT1-201ENST00000520444 758 ntTSL 3 BASIC4.25□□□□□ -1.73
SDC1P18827 DNAL1-205ENST00000554339 548 ntTSL 5 BASIC4.25□□□□□ -1.73
SDC1P18827 PSMA3-213ENST00000557508 814 ntTSL 5 BASIC4.25□□□□□ -1.73
SDC1P18827 AGBL1-AS1-203ENST00000566878 865 ntTSL 3 BASIC4.25□□□□□ -1.73
SDC1P18827 RN7SL176P-201ENST00000580352 264 ntBASIC4.25□□□□□ -1.73
SDC1P18827 MIR4527HG-203ENST00000600127 704 ntTSL 5 BASIC4.25□□□□□ -1.73
SDC1P18827 MTCO3P22-201ENST00000603219 784 ntBASIC4.25□□□□□ -1.73
SDC1P18827 AC242628.1-201ENST00000606810 391 ntBASIC4.25□□□□□ -1.73
SDC1P18827 AC020634.1-201ENST00000608701 549 ntBASIC4.25□□□□□ -1.73
SDC1P18827 AL356490.1-201ENST00000623079 479 ntBASIC4.25□□□□□ -1.73
SDC1P18827 ZNF415-201ENST00000243643 2270 ntAPPRIS P3 TSL 1 (best) BASIC4.25□□□□□ -1.73
SDC1P18827 OR8H2-203ENST00000641311 3092 ntAPPRIS P2 BASIC4.25□□□□□ -1.73
SDC1P18827 OMG-201ENST00000247271 1947 ntAPPRIS P1 TSL 1 (best) BASIC4.25□□□□□ -1.73
SDC1P18827 ADGRL3-202ENST00000504896 4816 ntTSL 5 BASIC4.24□□□□□ -1.73
SDC1P18827 KANSL1L-209ENST00000457374 2264 ntTSL 2 BASIC4.24□□□□□ -1.73
SDC1P18827 MAPK10-206ENST00000395161 4186 ntTSL 5 BASIC4.24□□□□□ -1.73
SDC1P18827 CD86-203ENST00000393627 1405 ntAPPRIS ALT2 TSL 1 (best) BASIC4.24□□□□□ -1.73
SDC1P18827 LINC01189-201ENST00000428440 3321 ntTSL 2 BASIC4.24□□□□□ -1.73
SDC1P18827 SMC6-203ENST00000402989 3729 ntAPPRIS P1 TSL 2 BASIC4.24□□□□□ -1.73
SDC1P18827 OR5F1-201ENST00000278409 945 ntAPPRIS P1 BASIC4.24□□□□□ -1.73
SDC1P18827 MIR298-201ENST00000401212 88 ntBASIC4.24□□□□□ -1.73
SDC1P18827 RPS24P12-201ENST00000402084 394 ntBASIC4.24□□□□□ -1.73
SDC1P18827 AL049697.2-201ENST00000403708 294 ntBASIC4.24□□□□□ -1.73
SDC1P18827 AL034374.1-201ENST00000406329 351 ntBASIC4.24□□□□□ -1.73
SDC1P18827 Z86062.1-201ENST00000406773 777 ntBASIC4.24□□□□□ -1.73
SDC1P18827 PLCE1-AS2-201ENST00000419353 459 ntTSL 5 BASIC4.24□□□□□ -1.73
SDC1P18827 FAR1P1-201ENST00000427163 934 ntBASIC4.24□□□□□ -1.73
Retrieved 100 of 98,524 protein–RNA pairs in 102.8 ms