Protein–RNA interactions for Protein: P17096

HMGA1, High mobility group protein HMG-I/HMG-Y, humanhuman

Known RBP Predictions only

Length 107 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1P17096 MTHFD2L-201ENST00000325278 2300 ntAPPRIS ALT2 TSL 5 BASIC4.35□□□□□ -1.71
HMGA1P17096 XIRP2-203ENST00000409195 12675 ntTSL 5 BASIC4.35□□□□□ -1.71
HMGA1P17096 AC104118.1-201ENST00000607625 1589 ntBASIC4.35□□□□□ -1.71
HMGA1P17096 CNGA1-209ENST00000544810 2722 ntAPPRIS ALT2 TSL 5 BASIC4.35□□□□□ -1.71
HMGA1P17096 AC079915.1-201ENST00000584382 2780 ntTSL 2 BASIC4.35□□□□□ -1.71
HMGA1P17096 PLCB4-206ENST00000414679 3947 ntAPPRIS ALT1 TSL 5 BASIC4.35□□□□□ -1.71
HMGA1P17096 AL513548.1-201ENST00000562904 1724 ntBASIC4.35□□□□□ -1.71
HMGA1P17096 CNTN1-201ENST00000347616 5507 ntAPPRIS P1 TSL 1 (best) BASIC4.35□□□□□ -1.71
HMGA1P17096 CFHR3-205ENST00000471440 1965 ntTSL 1 (best) BASIC4.34□□□□□ -1.71
HMGA1P17096 ANXA1-202ENST00000376911 2209 ntAPPRIS P1 TSL 1 (best) BASIC4.34□□□□□ -1.71
HMGA1P17096 PCAT14-202ENST00000627127 3935 ntBASIC4.34□□□□□ -1.71
HMGA1P17096 ZNF254-202ENST00000357002 3967 ntAPPRIS P1 TSL 1 (best) BASIC4.34□□□□□ -1.71
HMGA1P17096 ABCB5-202ENST00000404938 5811 ntAPPRIS P1 TSL 1 (best) BASIC4.34□□□□□ -1.71
HMGA1P17096 MAP2-202ENST00000360351 9711 ntAPPRIS P2 TSL 5 BASIC4.34□□□□□ -1.71
HMGA1P17096 ORMDL1-201ENST00000325795 2692 ntAPPRIS P1 TSL 1 (best) BASIC4.34□□□□□ -1.71
HMGA1P17096 PLCB1-210ENST00000612075 6576 ntTSL 5 BASIC4.34□□□□□ -1.71
HMGA1P17096 ZNF445-201ENST00000396077 18299 ntAPPRIS P1 TSL 1 (best) BASIC4.34□□□□□ -1.71
HMGA1P17096 ZNF705A-201ENST00000359286 3455 ntAPPRIS P1 TSL 2 BASIC4.34□□□□□ -1.71
HMGA1P17096 AC126323.6-202ENST00000568092 3511 ntBASIC4.34□□□□□ -1.71
HMGA1P17096 AL445189.1-201ENST00000405722 338 ntBASIC4.34□□□□□ -1.71
HMGA1P17096 AL590999.1-205ENST00000420293 440 ntTSL 3 BASIC4.34□□□□□ -1.71
HMGA1P17096 AL590999.1-204ENST00000430595 638 ntTSL 3 BASIC4.34□□□□□ -1.71
HMGA1P17096 AC006011.1-201ENST00000442758 349 ntBASIC4.34□□□□□ -1.71
HMGA1P17096 AC073636.1-202ENST00000457756 558 ntTSL 4 BASIC4.34□□□□□ -1.71
HMGA1P17096 AC012158.1-204ENST00000483430 465 ntBASIC4.34□□□□□ -1.71
HMGA1P17096 UBE2D3-217ENST00000504211 578 ntTSL 2 BASIC4.34□□□□□ -1.71
HMGA1P17096 HPRT1P2-201ENST00000505250 544 ntBASIC4.34□□□□□ -1.71
HMGA1P17096 AC005823.2-201ENST00000505978 650 ntTSL 3 BASIC4.34□□□□□ -1.71
HMGA1P17096 AC026782.2-201ENST00000510845 636 ntBASIC4.34□□□□□ -1.71
HMGA1P17096 OR7E10P-201ENST00000526420 991 ntBASIC4.34□□□□□ -1.71
HMGA1P17096 AC034105.4-201ENST00000568304 277 ntBASIC4.34□□□□□ -1.71
HMGA1P17096 AGGF1P6-201ENST00000569213 976 ntBASIC4.34□□□□□ -1.71
HMGA1P17096 RN7SL703P-201ENST00000578485 302 ntBASIC4.34□□□□□ -1.71
HMGA1P17096 AC105094.1-201ENST00000588245 316 ntTSL 3 BASIC4.34□□□□□ -1.71
HMGA1P17096 SLC25A36P1-201ENST00000590111 465 ntBASIC4.34□□□□□ -1.71
HMGA1P17096 ZNF682-204ENST00000593468 581 ntTSL 4 BASIC4.34□□□□□ -1.71
HMGA1P17096 AC010487.1-201ENST00000594408 1172 ntBASIC4.34□□□□□ -1.71
HMGA1P17096 RPS4XP16-203ENST00000596904 698 ntTSL 5 BASIC4.34□□□□□ -1.71
HMGA1P17096 AC013727.1-201ENST00000618581 839 ntTSL 5 BASIC4.34□□□□□ -1.71
HMGA1P17096 TMEM212-205ENST00000619900 585 ntAPPRIS P1 TSL 3 BASIC4.34□□□□□ -1.71
HMGA1P17096 FMO2-201ENST00000209929 3851 ntAPPRIS P1 TSL 1 (best) BASIC4.34□□□□□ -1.71
HMGA1P17096 LINC00862-201ENST00000367355 1417 ntTSL 1 (best) BASIC4.34□□□□□ -1.71
HMGA1P17096 USP9YP4-201ENST00000424401 1745 ntBASIC4.34□□□□□ -1.71
HMGA1P17096 C21orf91-201ENST00000284881 5433 ntAPPRIS P4 TSL 2 BASIC4.34□□□□□ -1.71
HMGA1P17096 SPOCK3-225ENST00000535728 2007 ntAPPRIS ALT2 TSL 5 BASIC4.34□□□□□ -1.71
HMGA1P17096 THOC1-221ENST00000631280 2011 ntTSL 5 BASIC4.34□□□□□ -1.71
HMGA1P17096 LCA5L-201ENST00000288350 2416 ntAPPRIS P1 TSL 5 BASIC4.34□□□□□ -1.72
HMGA1P17096 ZNF560-201ENST00000301480 2654 ntAPPRIS P1 TSL 1 (best) BASIC4.34□□□□□ -1.72
HMGA1P17096 FMN1-202ENST00000334528 12355 ntAPPRIS P3 TSL 1 (best) BASIC4.34□□□□□ -1.72
HMGA1P17096 ERICH3-AS1-202ENST00000612390 4874 ntTSL 1 (best) BASIC4.34□□□□□ -1.72
HMGA1P17096 ABI3BP-201ENST00000284322 4498 ntAPPRIS P2 TSL 1 (best) BASIC4.33□□□□□ -1.72
HMGA1P17096 TM4SF18-201ENST00000296059 3852 ntAPPRIS P1 TSL 1 (best) BASIC4.33□□□□□ -1.72
HMGA1P17096 ZNF682-207ENST00000595736 1710 ntTSL 2 BASIC4.33□□□□□ -1.72
HMGA1P17096 DDR2-202ENST00000367922 10160 ntAPPRIS P1 TSL 1 (best) BASIC4.33□□□□□ -1.72
HMGA1P17096 MGC32805-205ENST00000510972 1424 ntTSL 1 (best) BASIC4.33□□□□□ -1.72
HMGA1P17096 RN7SKP224-201ENST00000364140 325 ntBASIC4.33□□□□□ -1.72
HMGA1P17096 RN7SKP27-201ENST00000410684 333 ntBASIC4.33□□□□□ -1.72
HMGA1P17096 OR8F1P-201ENST00000425243 930 ntBASIC4.33□□□□□ -1.72
HMGA1P17096 AC241644.1-201ENST00000431525 446 ntTSL 3 BASIC4.33□□□□□ -1.72
HMGA1P17096 AL138759.1-201ENST00000432120 645 ntTSL 2 BASIC4.33□□□□□ -1.72
HMGA1P17096 LINC00704-202ENST00000443994 418 ntTSL 2 BASIC4.33□□□□□ -1.72
HMGA1P17096 AC011897.1-201ENST00000450715 346 ntTSL 3 BASIC4.33□□□□□ -1.72
HMGA1P17096 LINC02303-202ENST00000554711 531 ntTSL 3 BASIC4.33□□□□□ -1.72
HMGA1P17096 MIR4286-201ENST00000580651 93 ntBASIC4.33□□□□□ -1.72
HMGA1P17096 AC053481.4-201ENST00000583164 216 ntBASIC4.33□□□□□ -1.72
HMGA1P17096 AC006130.2-201ENST00000586202 326 ntBASIC4.33□□□□□ -1.72
HMGA1P17096 FAM26D-205ENST00000628083 1117 ntTSL 2 BASIC4.33□□□□□ -1.72
HMGA1P17096 CDRT1-208ENST00000630868 794 ntBASIC4.33□□□□□ -1.72
HMGA1P17096 TNRC6B-202ENST00000335727 17933 ntTSL 1 (best) BASIC4.33□□□□□ -1.72
HMGA1P17096 FTO-204ENST00000463855 3056 ntTSL 1 (best) BASIC4.33□□□□□ -1.72
HMGA1P17096 KCNJ6-201ENST00000609713 19645 ntAPPRIS P1 TSL 1 (best) BASIC4.33□□□□□ -1.72
HMGA1P17096 STON1-GTF2A1L-201ENST00000394751 3534 ntTSL 2 BASIC4.33□□□□□ -1.72
HMGA1P17096 NUTM2B-AS1-213ENST00000619625 7611 ntTSL 2 BASIC4.33□□□□□ -1.72
HMGA1P17096 RPGRIP1-201ENST00000382933 2004 ntTSL 1 (best) BASIC4.33□□□□□ -1.72
HMGA1P17096 SMC2-202ENST00000374787 4266 ntAPPRIS P1 TSL 2 BASIC4.32□□□□□ -1.72
HMGA1P17096 SLC17A1-204ENST00000476801 1704 ntAPPRIS P1 TSL 2 BASIC4.32□□□□□ -1.72
HMGA1P17096 CASC19-261ENST00000641853 1638 ntBASIC4.32□□□□□ -1.72
HMGA1P17096 LINC01538-201ENST00000588074 2408 ntTSL 1 (best) BASIC4.32□□□□□ -1.72
HMGA1P17096 LINC02477-201ENST00000512652 1417 ntTSL 5 BASIC4.32□□□□□ -1.72
HMGA1P17096 KLHL4-202ENST00000373119 5818 ntAPPRIS P1 TSL 1 (best) BASIC4.32□□□□□ -1.72
HMGA1P17096 C2orf76-201ENST00000334816 676 ntAPPRIS P1 TSL 1 (best) BASIC4.32□□□□□ -1.72
HMGA1P17096 GPAM-201ENST00000348367 6371 ntAPPRIS P1 TSL 1 (best) BASIC4.32□□□□□ -1.72
HMGA1P17096 CTNNAL1-203ENST00000374594 824 ntTSL 3 BASIC4.32□□□□□ -1.72
HMGA1P17096 MFAP5-202ENST00000396549 1195 ntTSL 2 BASIC4.32□□□□□ -1.72
HMGA1P17096 AL136368.1-201ENST00000416249 401 ntTSL 2 BASIC4.32□□□□□ -1.72
HMGA1P17096 AL391645.1-201ENST00000417409 506 ntTSL 3 BASIC4.32□□□□□ -1.72
HMGA1P17096 AC239367.2-201ENST00000447309 705 ntBASIC4.32□□□□□ -1.72
HMGA1P17096 AL589765.1-201ENST00000457548 386 ntTSL 2 BASIC4.32□□□□□ -1.72
HMGA1P17096 RN7SL817P-201ENST00000480777 288 ntBASIC4.32□□□□□ -1.72
HMGA1P17096 VN1R105P-201ENST00000486595 910 ntBASIC4.32□□□□□ -1.72
HMGA1P17096 AC020593.1-201ENST00000507399 299 ntBASIC4.32□□□□□ -1.72
HMGA1P17096 AC083923.2-203ENST00000520512 372 ntTSL 3 BASIC4.32□□□□□ -1.72
HMGA1P17096 IFITM8P-201ENST00000522529 394 ntBASIC4.32□□□□□ -1.72
HMGA1P17096 AC006065.3-201ENST00000541769 419 ntTSL 5 BASIC4.32□□□□□ -1.72
HMGA1P17096 FRMD6-AS2-202ENST00000557625 581 ntTSL 4 BASIC4.32□□□□□ -1.72
HMGA1P17096 AC007952.9-201ENST00000584365 191 ntTSL 3 BASIC4.32□□□□□ -1.72
HMGA1P17096 SATB1-AS1-263ENST00000630022 622 ntTSL 5 BASIC4.32□□□□□ -1.72
HMGA1P17096 RBM5-214ENST00000469838 2716 ntTSL 1 (best) BASIC4.32□□□□□ -1.72
HMGA1P17096 HNF4G-203ENST00000396423 4209 ntAPPRIS P3 TSL 1 (best) BASIC4.32□□□□□ -1.72
HMGA1P17096 EIF2AK2-201ENST00000233057 10042 ntAPPRIS P1 TSL 2 BASIC4.32□□□□□ -1.72
Retrieved 100 of 98,524 protein–RNA pairs in 162.9 ms