Protein–RNA interactions for Protein: O15457

MSH4, MutS protein homolog 4, humanhuman

Predictions only

Length 936 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH4O15457 AC138024.1-201ENST00000420867 699 ntTSL 3 BASIC4.84□□□□□ -1.63
MSH4O15457 LINC02013-201ENST00000438156 526 ntTSL 2 BASIC4.84□□□□□ -1.63
MSH4O15457 TRIM60P9Y-201ENST00000438459 816 ntBASIC4.84□□□□□ -1.63
MSH4O15457 ARAFP2-201ENST00000440565 559 ntBASIC4.84□□□□□ -1.63
MSH4O15457 CYP3A43-210ENST00000444905 733 ntTSL 5 BASIC4.84□□□□□ -1.63
MSH4O15457 TRIM60P11Y-201ENST00000445313 801 ntBASIC4.84□□□□□ -1.63
MSH4O15457 NUTF2P3-201ENST00000448540 384 ntBASIC4.84□□□□□ -1.63
MSH4O15457 SEPT7P3-201ENST00000455017 621 ntBASIC4.84□□□□□ -1.63
MSH4O15457 RPL23AP81-201ENST00000455252 467 ntBASIC4.84□□□□□ -1.63
MSH4O15457 RN7SL385P-201ENST00000468873 276 ntBASIC4.84□□□□□ -1.63
MSH4O15457 UQCRHP4-201ENST00000471686 272 ntBASIC4.84□□□□□ -1.63
MSH4O15457 UBTFL6-201ENST00000477929 1024 ntBASIC4.84□□□□□ -1.63
MSH4O15457 AC012158.1-204ENST00000483430 465 ntBASIC4.84□□□□□ -1.63
MSH4O15457 AC105137.1-201ENST00000484355 562 ntBASIC4.84□□□□□ -1.63
MSH4O15457 ENSA-211ENST00000503345 793 ntTSL 3 BASIC4.84□□□□□ -1.63
MSH4O15457 AC108475.1-201ENST00000507880 950 ntBASIC4.84□□□□□ -1.63
MSH4O15457 IGKV1OR2-1-201ENST00000514060 354 ntBASIC4.84□□□□□ -1.63
MSH4O15457 RNA5SP73-201ENST00000516744 108 ntBASIC4.84□□□□□ -1.63
MSH4O15457 AC007014.1-201ENST00000572828 610 ntTSL 3 BASIC4.84□□□□□ -1.63
MSH4O15457 AC011477.5-201ENST00000586571 259 ntBASIC4.84□□□□□ -1.63
MSH4O15457 LINC01791-201ENST00000589511 677 ntTSL 5 BASIC4.84□□□□□ -1.63
MSH4O15457 AC008759.1-201ENST00000589783 983 ntBASIC4.84□□□□□ -1.63
MSH4O15457 IPO5P1-202ENST00000600039 287 ntBASIC4.84□□□□□ -1.63
MSH4O15457 CEACAM7-204ENST00000602225 524 ntTSL 1 (best) BASIC4.84□□□□□ -1.63
MSH4O15457 AL161729.3-201ENST00000603533 673 ntBASIC4.84□□□□□ -1.63
MSH4O15457 MIR6716-201ENST00000613413 80 ntBASIC4.84□□□□□ -1.63
MSH4O15457 AC006338.2-201ENST00000616864 791 ntBASIC4.84□□□□□ -1.63
MSH4O15457 AL023881.1-201ENST00000621088 301 ntBASIC4.84□□□□□ -1.63
MSH4O15457 AL589740.1-204ENST00000634677 630 ntTSL 4 BASIC4.84□□□□□ -1.63
MSH4O15457 MYO9A-209ENST00000564571 8111 ntAPPRIS ALT2 TSL 1 (best) BASIC4.84□□□□□ -1.63
MSH4O15457 ZNF285-205ENST00000614994 6012 ntAPPRIS P3 TSL 1 (best) BASIC4.84□□□□□ -1.64
MSH4O15457 KCNJ6-201ENST00000609713 19645 ntAPPRIS P1 TSL 1 (best) BASIC4.84□□□□□ -1.64
MSH4O15457 CNTN1-202ENST00000348761 3328 ntTSL 1 (best) BASIC4.84□□□□□ -1.64
MSH4O15457 SLC44A5-201ENST00000370855 4406 ntAPPRIS P3 TSL 1 (best) BASIC4.83□□□□□ -1.64
MSH4O15457 DOCK7-211ENST00000634264 6303 ntAPPRIS ALT2 TSL 5 BASIC4.83□□□□□ -1.64
MSH4O15457 ZNF594-201ENST00000399604 4862 ntAPPRIS P1 BASIC4.83□□□□□ -1.64
MSH4O15457 PLCE1-202ENST00000371380 12024 ntAPPRIS P3 TSL 1 (best) BASIC4.83□□□□□ -1.64
MSH4O15457 WDR72-204ENST00000559418 3602 ntTSL 5 BASIC4.83□□□□□ -1.64
MSH4O15457 CYP3A43-201ENST00000222382 1515 ntAPPRIS P4 TSL 1 (best) BASIC4.83□□□□□ -1.64
MSH4O15457 NOL8P1-201ENST00000508336 3529 ntBASIC4.83□□□□□ -1.64
MSH4O15457 LMOD2-202ENST00000458573 2346 ntAPPRIS P1 TSL 2 BASIC4.83□□□□□ -1.64
MSH4O15457 ATXN3-207ENST00000503767 1315 ntTSL 1 (best) BASIC4.83□□□□□ -1.64
MSH4O15457 CYP7A1-201ENST00000301645 2950 ntAPPRIS P1 TSL 1 (best) BASIC4.83□□□□□ -1.64
MSH4O15457 AL049693.1-201ENST00000402760 611 ntBASIC4.83□□□□□ -1.64
MSH4O15457 SLC8A1-AS1-201ENST00000413479 800 ntTSL 5 BASIC4.83□□□□□ -1.64
MSH4O15457 LINC01661-201ENST00000415910 708 ntTSL 3 BASIC4.83□□□□□ -1.64
MSH4O15457 AL590006.1-201ENST00000417390 752 ntTSL 1 (best) BASIC4.83□□□□□ -1.64
MSH4O15457 MYCBP2-AS1-201ENST00000422231 519 ntTSL 3 BASIC4.83□□□□□ -1.64
MSH4O15457 AC004448.2-201ENST00000422360 586 ntBASIC4.83□□□□□ -1.64
MSH4O15457 AC012519.1-201ENST00000424588 610 ntBASIC4.83□□□□□ -1.64
MSH4O15457 GAS5-208ENST00000425771 242 ntTSL 3 BASIC4.83□□□□□ -1.64
MSH4O15457 RSL24D1P6-201ENST00000426934 401 ntBASIC4.83□□□□□ -1.64
MSH4O15457 FTLP19-201ENST00000433300 394 ntBASIC4.83□□□□□ -1.64
MSH4O15457 CEACAMP1-201ENST00000434624 1035 ntBASIC4.83□□□□□ -1.64
MSH4O15457 AL121872.1-202ENST00000435867 308 ntTSL 5 BASIC4.83□□□□□ -1.64
MSH4O15457 BMS1P22-202ENST00000440946 1160 ntTSL 1 (best) BASIC4.83□□□□□ -1.64
MSH4O15457 LINC01307-202ENST00000444327 771 ntTSL 2 BASIC4.83□□□□□ -1.64
MSH4O15457 EEF1A1P1-201ENST00000447052 739 ntBASIC4.83□□□□□ -1.64
MSH4O15457 ABCF2P2-201ENST00000450549 296 ntBASIC4.83□□□□□ -1.64
MSH4O15457 AC111000.4-201ENST00000504301 569 ntTSL 5 BASIC4.83□□□□□ -1.64
MSH4O15457 PARP4P3-201ENST00000510265 317 ntBASIC4.83□□□□□ -1.64
MSH4O15457 LINC02278-201ENST00000512170 500 ntTSL 5 BASIC4.83□□□□□ -1.64
MSH4O15457 SLIT2-IT1-201ENST00000515882 601 ntTSL 1 (best) BASIC4.83□□□□□ -1.64
MSH4O15457 AP003730.1-201ENST00000524605 285 ntBASIC4.83□□□□□ -1.64
MSH4O15457 AC006064.5-201ENST00000541782 248 ntBASIC4.83□□□□□ -1.64
MSH4O15457 AL355112.1-201ENST00000550309 1236 ntTSL 1 (best) BASIC4.83□□□□□ -1.64
MSH4O15457 AC105020.2-201ENST00000564683 572 ntTSL 5 BASIC4.83□□□□□ -1.64
MSH4O15457 AC092902.2-202ENST00000599350 686 ntTSL 3 BASIC4.83□□□□□ -1.64
MSH4O15457 FAM27D1-201ENST00000612308 341 ntBASIC4.83□□□□□ -1.64
MSH4O15457 AL138721.1-201ENST00000616756 179 ntBASIC4.83□□□□□ -1.64
MSH4O15457 AC019278.1-201ENST00000623516 479 ntBASIC4.83□□□□□ -1.64
MSH4O15457 ZNF345-216ENST00000640438 963 ntTSL 5 BASIC4.83□□□□□ -1.64
MSH4O15457 CSNK1G3-210ENST00000521364 2580 ntAPPRIS ALT2 TSL 2 BASIC4.83□□□□□ -1.64
MSH4O15457 SEC31A-203ENST00000348405 4012 ntAPPRIS ALT2 TSL 1 (best) BASIC4.83□□□□□ -1.64
MSH4O15457 CASK-207ENST00000421587 8204 ntAPPRIS ALT2 TSL 1 (best) BASIC4.83□□□□□ -1.64
MSH4O15457 CCDC91-201ENST00000381259 2334 ntAPPRIS P1 TSL 1 (best) BASIC4.83□□□□□ -1.64
MSH4O15457 FTO-203ENST00000460382 1517 ntTSL 5 BASIC4.82□□□□□ -1.64
MSH4O15457 CFHR3-206ENST00000617219 1462 ntTSL 5 BASIC4.82□□□□□ -1.64
MSH4O15457 ENPP3-201ENST00000357639 3162 ntAPPRIS P1 TSL 1 (best) BASIC4.82□□□□□ -1.64
MSH4O15457 GPX8-203ENST00000503787 1411 ntAPPRIS P1 TSL 1 (best) BASIC4.82□□□□□ -1.64
MSH4O15457 SCN1A-202ENST00000375405 8097 ntAPPRIS P3 TSL 5 BASIC4.82□□□□□ -1.64
MSH4O15457 PJA2-202ENST00000361557 4645 ntAPPRIS P1 TSL 2 BASIC4.82□□□□□ -1.64
MSH4O15457 AC010132.3-201ENST00000442788 2430 ntAPPRIS P5 TSL 5 BASIC4.82□□□□□ -1.64
MSH4O15457 MIR383-201ENST00000362257 73 ntBASIC4.82□□□□□ -1.64
MSH4O15457 SNORA70.2-201ENST00000364506 135 ntBASIC4.82□□□□□ -1.64
MSH4O15457 CFLAR-AS1-201ENST00000415011 1072 ntTSL 1 (best) BASIC4.82□□□□□ -1.64
MSH4O15457 MAP1LC3BP1-201ENST00000417653 379 ntBASIC4.82□□□□□ -1.64
MSH4O15457 EIF1P3-201ENST00000423841 334 ntBASIC4.82□□□□□ -1.64
MSH4O15457 AL161618.1-201ENST00000438738 761 ntTSL 5 BASIC4.82□□□□□ -1.64
MSH4O15457 MTND6P32-201ENST00000457611 483 ntBASIC4.82□□□□□ -1.64
MSH4O15457 AC016746.1-201ENST00000489557 831 ntTSL 2 BASIC4.82□□□□□ -1.64
MSH4O15457 PLSCR5-203ENST00000492200 1058 ntAPPRIS P1 TSL 5 BASIC4.82□□□□□ -1.64
MSH4O15457 AC104164.2-201ENST00000496953 495 ntBASIC4.82□□□□□ -1.64
MSH4O15457 NADK2-AS1-201ENST00000501794 720 ntTSL 1 (best) BASIC4.82□□□□□ -1.64
MSH4O15457 BMPR1B-204ENST00000502683 567 ntTSL 4 BASIC4.82□□□□□ -1.64
MSH4O15457 AL592156.1-201ENST00000508758 304 ntBASIC4.82□□□□□ -1.64
MSH4O15457 AC147055.1-201ENST00000509261 750 ntBASIC4.82□□□□□ -1.64
MSH4O15457 AC024587.2-201ENST00000509458 805 ntTSL 3 BASIC4.82□□□□□ -1.64
MSH4O15457 BTG4P1-201ENST00000510421 183 ntBASIC4.82□□□□□ -1.64
MSH4O15457 AC004704.1-201ENST00000511219 583 ntTSL 3 BASIC4.82□□□□□ -1.64
Retrieved 100 of 98,524 protein–RNA pairs in 138 ms