Protein–RNA interactions for Protein: Q9HCM9

TRIM39, E3 ubiquitin-protein ligase TRIM39, humanhuman

Predictions only

Length 518 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM39Q9HCM9 AL031320.2-201ENST00000591892 2079 ntTSL 5 BASIC5.84□□□□□ -1.47
TRIM39Q9HCM9 PFKFB2-202ENST00000367080 7094 ntAPPRIS P1 TSL 1 (best) BASIC5.84□□□□□ -1.48
TRIM39Q9HCM9 KMT5B-215ENST00000615954 4306 ntAPPRIS P1 TSL 1 (best) BASIC5.84□□□□□ -1.48
TRIM39Q9HCM9 AL591135.1-201ENST00000401578 5914 ntBASIC5.84□□□□□ -1.48
TRIM39Q9HCM9 MROH2B-203ENST00000506092 3745 ntTSL 2 BASIC5.84□□□□□ -1.48
TRIM39Q9HCM9 MAMDC2-AS1-201ENST00000377178 1504 ntTSL 1 (best) BASIC5.84□□□□□ -1.48
TRIM39Q9HCM9 ADAMTS9-AS2-201ENST00000460833 3691 ntTSL 1 (best) BASIC5.84□□□□□ -1.48
TRIM39Q9HCM9 ZNF285-204ENST00000591679 2388 ntAPPRIS ALT2 TSL 4 BASIC5.84□□□□□ -1.48
TRIM39Q9HCM9 TTBK2-201ENST00000267890 10905 ntAPPRIS P2 TSL 5 BASIC5.84□□□□□ -1.48
TRIM39Q9HCM9 CLCN3-201ENST00000347613 3635 ntAPPRIS P4 TSL 1 (best) BASIC5.84□□□□□ -1.48
TRIM39Q9HCM9 AC011604.2-201ENST00000381541 2268 ntAPPRIS ALT2 TSL 2 BASIC5.83□□□□□ -1.48
TRIM39Q9HCM9 CARD6-201ENST00000254691 4221 ntAPPRIS P1 TSL 1 (best) BASIC5.83□□□□□ -1.48
TRIM39Q9HCM9 LRRC36-202ENST00000435835 1765 ntTSL 2 BASIC5.83□□□□□ -1.48
TRIM39Q9HCM9 OR56A4-204ENST00000641835 3613 ntAPPRIS P1 BASIC5.83□□□□□ -1.48
TRIM39Q9HCM9 EIF3E-206ENST00000519030 1324 ntTSL 5 BASIC5.83□□□□□ -1.48
TRIM39Q9HCM9 ZNF484-201ENST00000332591 2836 ntTSL 2 BASIC5.83□□□□□ -1.48
TRIM39Q9HCM9 AC130304.1-201ENST00000622942 2385 ntBASIC5.83□□□□□ -1.48
TRIM39Q9HCM9 RNA5-8SP5-201ENST00000365304 152 ntBASIC5.83□□□□□ -1.48
TRIM39Q9HCM9 AL158212.2-201ENST00000369391 460 ntTSL 3 BASIC5.83□□□□□ -1.48
TRIM39Q9HCM9 OR5H15-201ENST00000383696 930 ntBASIC5.83□□□□□ -1.48
TRIM39Q9HCM9 AL020993.1-201ENST00000420172 297 ntTSL 3 BASIC5.83□□□□□ -1.48
TRIM39Q9HCM9 AL157834.1-201ENST00000422744 420 ntTSL 3 BASIC5.83□□□□□ -1.48
TRIM39Q9HCM9 MYCBP2-AS2-201ENST00000428716 428 ntTSL 5 BASIC5.83□□□□□ -1.48
TRIM39Q9HCM9 AL021408.1-201ENST00000430428 552 ntTSL 4 BASIC5.83□□□□□ -1.48
TRIM39Q9HCM9 FTLP19-201ENST00000433300 394 ntBASIC5.83□□□□□ -1.48
TRIM39Q9HCM9 DIAPH2-AS1-201ENST00000439759 971 ntTSL 3 BASIC5.83□□□□□ -1.48
TRIM39Q9HCM9 RPL12P11-201ENST00000439970 501 ntBASIC5.83□□□□□ -1.48
TRIM39Q9HCM9 AL663074.2-201ENST00000440621 479 ntBASIC5.83□□□□□ -1.48
TRIM39Q9HCM9 AC099654.1-201ENST00000442649 407 ntTSL 3 BASIC5.83□□□□□ -1.48
TRIM39Q9HCM9 FHP1-201ENST00000442741 703 ntBASIC5.83□□□□□ -1.48
TRIM39Q9HCM9 AL139275.1-201ENST00000447315 824 ntTSL 1 (best) BASIC5.83□□□□□ -1.48
TRIM39Q9HCM9 MOB4-207ENST00000448447 1021 ntTSL 2 BASIC5.83□□□□□ -1.48
TRIM39Q9HCM9 RPL36AP33-201ENST00000450395 310 ntBASIC5.83□□□□□ -1.48
TRIM39Q9HCM9 AKR1C2-203ENST00000455190 1098 ntTSL 2 BASIC5.83□□□□□ -1.48
TRIM39Q9HCM9 RNU6-1218P-201ENST00000458990 108 ntBASIC5.83□□□□□ -1.48
TRIM39Q9HCM9 AL603882.1-201ENST00000463059 681 ntBASIC5.83□□□□□ -1.48
TRIM39Q9HCM9 AC011476.1-201ENST00000466725 307 ntBASIC5.83□□□□□ -1.48
TRIM39Q9HCM9 AL162742.2-201ENST00000472915 244 ntTSL 5 BASIC5.83□□□□□ -1.48
TRIM39Q9HCM9 AC109486.1-201ENST00000486833 374 ntBASIC5.83□□□□□ -1.48
TRIM39Q9HCM9 AC090071.1-201ENST00000507713 644 ntBASIC5.83□□□□□ -1.48
TRIM39Q9HCM9 RPL7L1P13-201ENST00000511702 739 ntBASIC5.83□□□□□ -1.48
TRIM39Q9HCM9 AC006296.1-201ENST00000514401 591 ntTSL 2 BASIC5.83□□□□□ -1.48
TRIM39Q9HCM9 MYLK-AS2-202ENST00000515464 754 ntTSL 2 BASIC5.83□□□□□ -1.48
TRIM39Q9HCM9 AC096577.1-202ENST00000515649 448 ntTSL 3 BASIC5.83□□□□□ -1.48
TRIM39Q9HCM9 LINC00861-202ENST00000517869 606 ntTSL 5 BASIC5.83□□□□□ -1.48
TRIM39Q9HCM9 H2AFV-208ENST00000521529 439 ntTSL 5 BASIC5.83□□□□□ -1.48
TRIM39Q9HCM9 AP000873.2-204ENST00000530825 375 ntTSL 3 BASIC5.83□□□□□ -1.48
TRIM39Q9HCM9 MRPL42-203ENST00000547098 701 ntTSL 3 BASIC5.83□□□□□ -1.48
TRIM39Q9HCM9 AC004551.1-201ENST00000552784 575 ntTSL 4 BASIC5.83□□□□□ -1.48
TRIM39Q9HCM9 HSPE1P2-201ENST00000554777 306 ntBASIC5.83□□□□□ -1.48
TRIM39Q9HCM9 AC092121.1-201ENST00000569452 202 ntBASIC5.83□□□□□ -1.48
TRIM39Q9HCM9 LINC01572-205ENST00000570152 360 ntTSL 3 BASIC5.83□□□□□ -1.48
TRIM39Q9HCM9 AC118755.1-201ENST00000572923 195 ntTSL 3 BASIC5.83□□□□□ -1.48
TRIM39Q9HCM9 LINC02186-201ENST00000575767 885 ntTSL 1 (best) BASIC5.83□□□□□ -1.48
TRIM39Q9HCM9 AC011260.1-201ENST00000578420 472 ntBASIC5.83□□□□□ -1.48
TRIM39Q9HCM9 AC008395.1-201ENST00000601752 607 ntTSL 5 BASIC5.83□□□□□ -1.48
TRIM39Q9HCM9 DEFB131E-202ENST00000602581 683 ntBASIC5.83□□□□□ -1.48
TRIM39Q9HCM9 MTCYBP22-201ENST00000603788 447 ntBASIC5.83□□□□□ -1.48
TRIM39Q9HCM9 AC128687.1-201ENST00000605304 619 ntBASIC5.83□□□□□ -1.48
TRIM39Q9HCM9 AC023813.4-201ENST00000607580 580 ntBASIC5.83□□□□□ -1.48
TRIM39Q9HCM9 Z98949.1-207ENST00000609157 814 ntTSL 5 BASIC5.83□□□□□ -1.48
TRIM39Q9HCM9 AC112493.1-201ENST00000609836 303 ntTSL 3 BASIC5.83□□□□□ -1.48
TRIM39Q9HCM9 AC104073.3-201ENST00000610942 955 ntBASIC5.83□□□□□ -1.48
TRIM39Q9HCM9 MIR7844-201ENST00000616161 122 ntBASIC5.83□□□□□ -1.48
TRIM39Q9HCM9 AL354810.1-201ENST00000618134 635 ntTSL 3 BASIC5.83□□□□□ -1.48
TRIM39Q9HCM9 AL590240.3-201ENST00000621416 943 ntBASIC5.83□□□□□ -1.48
TRIM39Q9HCM9 CR392039.4-201ENST00000624968 501 ntBASIC5.83□□□□□ -1.48
TRIM39Q9HCM9 AC087565.3-203ENST00000641018 837 ntBASIC5.83□□□□□ -1.48
TRIM39Q9HCM9 PARP8-212ENST00000505697 2747 ntAPPRIS P1 TSL 1 (best) BASIC5.83□□□□□ -1.48
TRIM39Q9HCM9 AC092079.1-201ENST00000558620 1985 ntBASIC5.83□□□□□ -1.48
TRIM39Q9HCM9 TCF7L2-219ENST00000542695 4136 ntTSL 5 BASIC5.83□□□□□ -1.48
TRIM39Q9HCM9 AC022164.1-201ENST00000568767 2673 ntBASIC5.83□□□□□ -1.48
TRIM39Q9HCM9 OR6C4-202ENST00000641569 5141 ntAPPRIS P1 BASIC5.83□□□□□ -1.48
TRIM39Q9HCM9 NCOA3-203ENST00000372004 7939 ntAPPRIS ALT2 TSL 1 (best) BASIC5.83□□□□□ -1.48
TRIM39Q9HCM9 AK9-204ENST00000424296 6326 ntAPPRIS P1 TSL 5 BASIC5.83□□□□□ -1.48
TRIM39Q9HCM9 ZNF432-202ENST00000594154 4513 ntAPPRIS P1 TSL 1 (best) BASIC5.83□□□□□ -1.48
TRIM39Q9HCM9 SLC30A7-203ENST00000370112 7898 ntAPPRIS P1 TSL 1 (best) BASIC5.83□□□□□ -1.48
TRIM39Q9HCM9 KLHL28-202ENST00000396128 6545 ntAPPRIS P1 TSL 1 (best) BASIC5.83□□□□□ -1.48
TRIM39Q9HCM9 ZEB1-201ENST00000320985 5423 ntAPPRIS P3 TSL 1 (best) BASIC5.83□□□□□ -1.48
TRIM39Q9HCM9 FGF1-202ENST00000359370 3660 ntAPPRIS P1 TSL 1 (best) BASIC5.83□□□□□ -1.48
TRIM39Q9HCM9 CRB1-203ENST00000367400 4932 ntAPPRIS P1 TSL 1 (best) BASIC5.82□□□□□ -1.48
TRIM39Q9HCM9 PGM3-211ENST00000512866 2013 ntTSL 1 (best) BASIC5.82□□□□□ -1.48
TRIM39Q9HCM9 AC007842.1-201ENST00000597336 2039 ntBASIC5.82□□□□□ -1.48
TRIM39Q9HCM9 MTND4P26-201ENST00000415971 1359 ntBASIC5.82□□□□□ -1.48
TRIM39Q9HCM9 MRRFP1-201ENST00000435941 1675 ntBASIC5.82□□□□□ -1.48
TRIM39Q9HCM9 CHST9-203ENST00000618847 11388 ntAPPRIS P1 TSL 1 (best) BASIC5.82□□□□□ -1.48
TRIM39Q9HCM9 TMOD2-201ENST00000249700 9191 ntAPPRIS P1 TSL 1 (best) BASIC5.82□□□□□ -1.48
TRIM39Q9HCM9 ZNF418-212ENST00000616958 2212 ntAPPRIS P3 TSL 1 (best) BASIC5.82□□□□□ -1.48
TRIM39Q9HCM9 AL513550.1-201ENST00000418945 1638 ntTSL 2 BASIC5.82□□□□□ -1.48
TRIM39Q9HCM9 CASC15-207ENST00000607048 1634 ntTSL 2 BASIC5.82□□□□□ -1.48
TRIM39Q9HCM9 R3HDM1-202ENST00000409478 4272 ntTSL 1 (best) BASIC5.82□□□□□ -1.48
TRIM39Q9HCM9 SCGB2A2-202ENST00000525380 1305 ntTSL 2 BASIC5.82□□□□□ -1.48
TRIM39Q9HCM9 EXOC1-201ENST00000346134 3357 ntAPPRIS P4 TSL 2 BASIC5.82□□□□□ -1.48
TRIM39Q9HCM9 ROR1-AS1-202ENST00000424995 2189 ntTSL 2 BASIC5.82□□□□□ -1.48
TRIM39Q9HCM9 POLE2-206ENST00000554396 1581 ntTSL 1 (best) BASIC5.82□□□□□ -1.48
TRIM39Q9HCM9 USMG5-201ENST00000309579 364 ntAPPRIS P1 TSL 1 (best) BASIC5.82□□□□□ -1.48
TRIM39Q9HCM9 SNORD1C-201ENST00000363315 78 ntBASIC5.82□□□□□ -1.48
TRIM39Q9HCM9 RNU6-1122P-201ENST00000384449 107 ntBASIC5.82□□□□□ -1.48
TRIM39Q9HCM9 SPRR2A-201ENST00000392653 709 ntAPPRIS P1 TSL 1 (best) BASIC5.82□□□□□ -1.48
TRIM39Q9HCM9 ATP5F1P4-201ENST00000397288 746 ntBASIC5.82□□□□□ -1.48
Retrieved 100 of 98,524 protein–RNA pairs in 104.8 ms