Protein–RNA interactions for Protein: Q99567

NUP88, Nuclear pore complex protein Nup88, humanhuman

Predicted RBP Predictions only

Length 741 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88Q99567 REREP1Y-201ENST00000422655 198 ntBASIC5.97□□□□□ -1.45
NUP88Q99567 AC092634.2-201ENST00000428146 1010 ntBASIC5.97□□□□□ -1.45
NUP88Q99567 AL360081.1-201ENST00000428299 555 ntBASIC5.97□□□□□ -1.45
NUP88Q99567 AL049745.1-201ENST00000433953 286 ntBASIC5.97□□□□□ -1.45
NUP88Q99567 AL354863.1-204ENST00000436430 556 ntTSL 3 BASIC5.97□□□□□ -1.45
NUP88Q99567 REREP2Y-201ENST00000439103 200 ntBASIC5.97□□□□□ -1.45
NUP88Q99567 AC068135.1-201ENST00000446164 246 ntBASIC5.97□□□□□ -1.45
NUP88Q99567 SDCBP-205ENST00000447267 772 ntTSL 3 BASIC5.97□□□□□ -1.45
NUP88Q99567 OR52E3P-201ENST00000452083 936 ntBASIC5.97□□□□□ -1.45
NUP88Q99567 CDC42P1-201ENST00000456658 548 ntBASIC5.97□□□□□ -1.45
NUP88Q99567 AC069528.1-202ENST00000482888 637 ntBASIC5.97□□□□□ -1.45
NUP88Q99567 AC119150.1-201ENST00000507143 563 ntTSL 2 BASIC5.97□□□□□ -1.45
NUP88Q99567 AC008780.2-201ENST00000509844 820 ntTSL 2 BASIC5.97□□□□□ -1.45
NUP88Q99567 RNA5SP230-201ENST00000517039 122 ntBASIC5.97□□□□□ -1.45
NUP88Q99567 AL359219.2-201ENST00000555184 348 ntBASIC5.97□□□□□ -1.45
NUP88Q99567 AC015660.3-201ENST00000559569 198 ntTSL 3 BASIC5.97□□□□□ -1.45
NUP88Q99567 AC138907.2-201ENST00000561479 866 ntTSL 3 BASIC5.97□□□□□ -1.45
NUP88Q99567 AC145350.4-201ENST00000562827 866 ntTSL 3 BASIC5.97□□□□□ -1.45
NUP88Q99567 AC133485.5-201ENST00000563407 866 ntTSL 3 BASIC5.97□□□□□ -1.45
NUP88Q99567 AC007448.2-201ENST00000583452 380 ntTSL 3 BASIC5.97□□□□□ -1.45
NUP88Q99567 MIR4660-201ENST00000583549 74 ntBASIC5.97□□□□□ -1.45
NUP88Q99567 AC006504.5-202ENST00000586784 656 ntTSL 2 BASIC5.97□□□□□ -1.45
NUP88Q99567 AC024592.1-202ENST00000590441 341 ntTSL 3 BASIC5.97□□□□□ -1.45
NUP88Q99567 GMFG-202ENST00000594700 397 ntTSL 2 BASIC5.97□□□□□ -1.45
NUP88Q99567 AC024075.3-201ENST00000601687 453 ntTSL 5 BASIC5.97□□□□□ -1.45
NUP88Q99567 AC002487.1-201ENST00000604565 994 ntBASIC5.97□□□□□ -1.45
NUP88Q99567 MEMO1P5-201ENST00000604810 406 ntBASIC5.97□□□□□ -1.45
NUP88Q99567 AC079395.3-201ENST00000615161 484 ntBASIC5.97□□□□□ -1.45
NUP88Q99567 GMFB-210ENST00000628554 639 ntTSL 4 BASIC5.97□□□□□ -1.45
NUP88Q99567 IFRD1-217ENST00000621379 3232 ntTSL 2 BASIC5.97□□□□□ -1.45
NUP88Q99567 LINC02227-201ENST00000619068 3748 ntTSL 1 (best) BASIC5.97□□□□□ -1.45
NUP88Q99567 AL138820.1-201ENST00000617901 5305 ntBASIC5.97□□□□□ -1.45
NUP88Q99567 ZNF573-208ENST00000536220 2257 ntAPPRIS P1 TSL 3 BASIC5.97□□□□□ -1.45
NUP88Q99567 AC092376.2-201ENST00000622621 4116 ntBASIC5.97□□□□□ -1.45
NUP88Q99567 FPGT-208ENST00000534056 1426 ntTSL 2 BASIC5.97□□□□□ -1.45
NUP88Q99567 MFAP1-201ENST00000267812 2155 ntAPPRIS P1 TSL 1 (best) BASIC5.97□□□□□ -1.45
NUP88Q99567 CTAGE5-207ENST00000396165 3071 ntTSL 1 (best) BASIC5.97□□□□□ -1.45
NUP88Q99567 RFX4-201ENST00000229387 3378 ntTSL 1 (best) BASIC5.97□□□□□ -1.45
NUP88Q99567 ZBED6-201ENST00000545588 7979 ntTSL 1 (best) BASIC5.96□□□□□ -1.45
NUP88Q99567 XKR4-201ENST00000327381 19880 ntAPPRIS P1 TSL 1 (best) BASIC5.96□□□□□ -1.45
NUP88Q99567 MECOM-201ENST00000264674 4900 ntTSL 1 (best) BASIC5.96□□□□□ -1.45
NUP88Q99567 PRPF4B-201ENST00000337659 4415 ntAPPRIS P1 TSL 1 (best) BASIC5.96□□□□□ -1.45
NUP88Q99567 ANO6-205ENST00000441606 5955 ntAPPRIS ALT2 TSL 1 (best) BASIC5.96□□□□□ -1.45
NUP88Q99567 EEF1A1P36-201ENST00000427807 1351 ntBASIC5.96□□□□□ -1.45
NUP88Q99567 C2orf73-208ENST00000615983 1376 ntTSL 1 (best) BASIC5.96□□□□□ -1.45
NUP88Q99567 BAZ2B-203ENST00000392782 8058 ntTSL 1 (best) BASIC5.96□□□□□ -1.46
NUP88Q99567 BX664718.1-201ENST00000439824 3224 ntTSL 2 BASIC5.96□□□□□ -1.46
NUP88Q99567 PSMC6-201ENST00000445930 2188 ntAPPRIS P2 TSL 1 (best) BASIC5.96□□□□□ -1.46
NUP88Q99567 AL162425.1-201ENST00000423637 1525 ntTSL 1 (best) BASIC5.96□□□□□ -1.46
NUP88Q99567 NEK11-207ENST00000508196 1938 ntAPPRIS P3 TSL 2 BASIC5.96□□□□□ -1.46
NUP88Q99567 VSNL1-203ENST00000406397 2725 ntAPPRIS P1 TSL 5 BASIC5.96□□□□□ -1.46
NUP88Q99567 AL033384.1-202ENST00000431554 3104 ntTSL 1 (best) BASIC5.96□□□□□ -1.46
NUP88Q99567 RNU6-1339P-201ENST00000363574 91 ntBASIC5.96□□□□□ -1.46
NUP88Q99567 RNU6-353P-201ENST00000364266 108 ntBASIC5.96□□□□□ -1.46
NUP88Q99567 OR1L6-202ENST00000373684 1044 ntBASIC5.96□□□□□ -1.46
NUP88Q99567 RNU6-549P-201ENST00000384433 107 ntBASIC5.96□□□□□ -1.46
NUP88Q99567 IGLJ6-201ENST00000390328 70 ntAPPRIS P1 BASIC5.96□□□□□ -1.46
NUP88Q99567 RN7SKP216-201ENST00000411050 312 ntBASIC5.96□□□□□ -1.46
NUP88Q99567 ARSD-AS1-201ENST00000414053 816 ntTSL 2 BASIC5.96□□□□□ -1.46
NUP88Q99567 RPS7P9-201ENST00000414704 586 ntBASIC5.96□□□□□ -1.46
NUP88Q99567 CHEK2P3-201ENST00000416118 248 ntBASIC5.96□□□□□ -1.46
NUP88Q99567 OR51A6P-201ENST00000418680 1004 ntBASIC5.96□□□□□ -1.46
NUP88Q99567 RPS3AP37-201ENST00000419176 745 ntBASIC5.96□□□□□ -1.46
NUP88Q99567 OR2X1P-201ENST00000421144 687 ntBASIC5.96□□□□□ -1.46
NUP88Q99567 OR5M12P-201ENST00000423388 929 ntBASIC5.96□□□□□ -1.46
NUP88Q99567 AC092447.3-201ENST00000426027 686 ntBASIC5.96□□□□□ -1.46
NUP88Q99567 LINC00458-202ENST00000427299 1030 ntTSL 1 (best) BASIC5.96□□□□□ -1.46
NUP88Q99567 HIGD1AP12-201ENST00000427832 281 ntBASIC5.96□□□□□ -1.46
NUP88Q99567 RPL19P16-201ENST00000433839 588 ntBASIC5.96□□□□□ -1.46
NUP88Q99567 CR769776.1-201ENST00000441254 787 ntBASIC5.96□□□□□ -1.46
NUP88Q99567 HMGB3P6-201ENST00000444896 598 ntBASIC5.96□□□□□ -1.46
NUP88Q99567 LINC00448-202ENST00000448411 433 ntTSL 2 BASIC5.96□□□□□ -1.46
NUP88Q99567 AC091959.2-201ENST00000477363 321 ntBASIC5.96□□□□□ -1.46
NUP88Q99567 RN7SL814P-201ENST00000487715 300 ntBASIC5.96□□□□□ -1.46
NUP88Q99567 AL365273.2-201ENST00000491114 492 ntAPPRIS P1 TSL 5 BASIC5.96□□□□□ -1.46
NUP88Q99567 CCDC39-AS1-201ENST00000495357 283 ntTSL 3 BASIC5.96□□□□□ -1.46
NUP88Q99567 AC093890.1-201ENST00000502554 540 ntBASIC5.96□□□□□ -1.46
NUP88Q99567 AC091860.1-201ENST00000505723 432 ntBASIC5.96□□□□□ -1.46
NUP88Q99567 BTF3P13-201ENST00000513224 490 ntBASIC5.96□□□□□ -1.46
NUP88Q99567 AC008033.2-201ENST00000542626 177 ntBASIC5.96□□□□□ -1.46
NUP88Q99567 AC007688.2-201ENST00000545158 369 ntTSL 3 BASIC5.96□□□□□ -1.46
NUP88Q99567 NOP10-202ENST00000557912 436 ntTSL 2 BASIC5.96□□□□□ -1.46
NUP88Q99567 AC018554.1-201ENST00000565506 800 ntTSL 2 BASIC5.96□□□□□ -1.46
NUP88Q99567 MMP2-AS1-202ENST00000569037 553 ntTSL 5 BASIC5.96□□□□□ -1.46
NUP88Q99567 DIAPH2-AS1-204ENST00000579945 974 ntTSL 1 (best) BASIC5.96□□□□□ -1.46
NUP88Q99567 AP005230.1-201ENST00000585072 675 ntTSL 5 BASIC5.96□□□□□ -1.46
NUP88Q99567 AC002069.2-201ENST00000603580 883 ntBASIC5.96□□□□□ -1.46
NUP88Q99567 AC105402.3-203ENST00000608822 885 ntTSL 5 BASIC5.96□□□□□ -1.46
NUP88Q99567 AC010975.3-201ENST00000618727 978 ntBASIC5.96□□□□□ -1.46
NUP88Q99567 AC013470.4-201ENST00000619978 986 ntBASIC5.96□□□□□ -1.46
NUP88Q99567 AC011330.2-201ENST00000621680 635 ntBASIC5.96□□□□□ -1.46
NUP88Q99567 AC090897.3-201ENST00000636973 1157 ntBASIC5.96□□□□□ -1.46
NUP88Q99567 IFI16-203ENST00000359709 2609 ntAPPRIS ALT2 TSL 2 BASIC5.96□□□□□ -1.46
NUP88Q99567 GUCY1A3-201ENST00000296518 4400 ntAPPRIS P1 TSL 1 (best) BASIC5.96□□□□□ -1.46
NUP88Q99567 AC025034.1-201ENST00000552778 1711 ntTSL 3 BASIC5.96□□□□□ -1.46
NUP88Q99567 ZNF639-210ENST00000621687 1458 ntAPPRIS P1 TSL 1 (best) BASIC5.96□□□□□ -1.46
NUP88Q99567 LINC01619-207ENST00000551843 2205 ntTSL 1 (best) BASIC5.95□□□□□ -1.46
NUP88Q99567 ZEB1-219ENST00000560721 3368 ntAPPRIS ALT2 TSL 2 BASIC5.95□□□□□ -1.46
NUP88Q99567 ZNF418-205ENST00000595830 3543 ntAPPRIS P3 TSL 1 (best) BASIC5.95□□□□□ -1.46
NUP88Q99567 TNFAIP8-207ENST00000513374 1385 ntTSL 2 BASIC5.95□□□□□ -1.46
Retrieved 100 of 98,524 protein–RNA pairs in 135.5 ms