Protein–RNA interactions for Protein: Q96QK1

VPS35, Vacuolar protein sorting-associated protein 35, humanhuman

Predictions only

Length 796 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35Q96QK1 IL6ST-212ENST00000522633 1878 ntTSL 1 (best) BASIC4.6□□□□□ -1.67
VPS35Q96QK1 IL1RL1-201ENST00000233954 2058 ntAPPRIS P1 TSL 1 (best) BASIC4.6□□□□□ -1.67
VPS35Q96QK1 MRE11-202ENST00000323977 2588 ntTSL 1 (best) BASIC4.59□□□□□ -1.67
VPS35Q96QK1 C2CD6-204ENST00000450242 2571 ntAPPRIS ALT2 TSL 1 (best) BASIC4.59□□□□□ -1.67
VPS35Q96QK1 U2SURP-208ENST00000473835 7276 ntAPPRIS P1 TSL 1 (best) BASIC4.59□□□□□ -1.67
VPS35Q96QK1 CFAP70-203ENST00000355577 3691 ntTSL 5 BASIC4.59□□□□□ -1.67
VPS35Q96QK1 ERGIC2-201ENST00000360150 5014 ntAPPRIS P1 TSL 1 (best) BASIC4.59□□□□□ -1.67
VPS35Q96QK1 OR4K15-201ENST00000305051 1216 ntBASIC4.59□□□□□ -1.67
VPS35Q96QK1 IL6STP1-201ENST00000346911 1020 ntBASIC4.59□□□□□ -1.67
VPS35Q96QK1 TMEM71-201ENST00000356838 1993 ntAPPRIS P3 TSL 1 (best) BASIC4.59□□□□□ -1.67
VPS35Q96QK1 RNU1-83P-201ENST00000363426 164 ntBASIC4.59□□□□□ -1.67
VPS35Q96QK1 SNORD113.2-201ENST00000364166 89 ntBASIC4.59□□□□□ -1.67
VPS35Q96QK1 MIR192-201ENST00000384915 110 ntBASIC4.59□□□□□ -1.67
VPS35Q96QK1 MIR708-201ENST00000390708 88 ntBASIC4.59□□□□□ -1.67
VPS35Q96QK1 LAP3P1-201ENST00000403648 294 ntBASIC4.59□□□□□ -1.67
VPS35Q96QK1 RPS16P5-201ENST00000406501 404 ntBASIC4.59□□□□□ -1.67
VPS35Q96QK1 RN7SKP222-201ENST00000410651 315 ntBASIC4.59□□□□□ -1.67
VPS35Q96QK1 KPNA2P2-201ENST00000419546 1489 ntBASIC4.59□□□□□ -1.67
VPS35Q96QK1 AL627224.1-201ENST00000448334 444 ntBASIC4.59□□□□□ -1.67
VPS35Q96QK1 TMSB4X-204ENST00000451311 628 ntAPPRIS P1 TSL 1 (best) BASIC4.59□□□□□ -1.67
VPS35Q96QK1 AC009365.2-201ENST00000453078 799 ntTSL 3 BASIC4.59□□□□□ -1.67
VPS35Q96QK1 LINC01921-201ENST00000456163 393 ntTSL 1 (best) BASIC4.59□□□□□ -1.67
VPS35Q96QK1 AP002345.1-201ENST00000456493 928 ntBASIC4.59□□□□□ -1.67
VPS35Q96QK1 LINC01455-201ENST00000503167 561 ntTSL 4 BASIC4.59□□□□□ -1.67
VPS35Q96QK1 AC021087.2-201ENST00000504656 1203 ntBASIC4.59□□□□□ -1.67
VPS35Q96QK1 CDV3-208ENST00000511392 554 ntTSL 5 BASIC4.59□□□□□ -1.67
VPS35Q96QK1 AC021146.3-201ENST00000511911 260 ntBASIC4.59□□□□□ -1.67
VPS35Q96QK1 SNORA48.9-201ENST00000516419 162 ntBASIC4.59□□□□□ -1.67
VPS35Q96QK1 AC099520.2-201ENST00000523745 567 ntTSL 3 BASIC4.59□□□□□ -1.67
VPS35Q96QK1 TMEM71-210ENST00000523829 1974 ntAPPRIS ALT2 TSL 5 BASIC4.59□□□□□ -1.67
VPS35Q96QK1 NAP1L1-204ENST00000535020 1686 ntTSL 2 BASIC4.59□□□□□ -1.67
VPS35Q96QK1 PDCD5P1-201ENST00000543528 309 ntBASIC4.59□□□□□ -1.67
VPS35Q96QK1 MTRNR2L7-201ENST00000544824 1535 ntAPPRIS P1 BASIC4.59□□□□□ -1.67
VPS35Q96QK1 AC137768.1-201ENST00000549998 553 ntBASIC4.59□□□□□ -1.67
VPS35Q96QK1 AC015912.2-201ENST00000571053 181 ntBASIC4.59□□□□□ -1.67
VPS35Q96QK1 DHX40P1-201ENST00000588725 1412 ntBASIC4.59□□□□□ -1.67
VPS35Q96QK1 AL133338.2-201ENST00000604292 736 ntBASIC4.59□□□□□ -1.67
VPS35Q96QK1 MALAT1-205ENST00000610851 584 ntTSL 2 BASIC4.59□□□□□ -1.67
VPS35Q96QK1 uc_338.18-201ENST00000615451 175 ntBASIC4.59□□□□□ -1.67
VPS35Q96QK1 AC243585.1-201ENST00000617867 607 ntTSL 3 BASIC4.59□□□□□ -1.67
VPS35Q96QK1 AL359757.1-201ENST00000623176 255 ntBASIC4.59□□□□□ -1.67
VPS35Q96QK1 AC020763.5-201ENST00000623298 430 ntBASIC4.59□□□□□ -1.67
VPS35Q96QK1 AP002967.1-201ENST00000624203 539 ntBASIC4.59□□□□□ -1.67
VPS35Q96QK1 LINC01359-206ENST00000634775 888 ntTSL 5 BASIC4.59□□□□□ -1.67
VPS35Q96QK1 OR4K15-202ENST00000641512 1216 ntAPPRIS P1 BASIC4.59□□□□□ -1.67
VPS35Q96QK1 OR5AC4P-202ENST00000642086 985 ntBASIC4.59□□□□□ -1.67
VPS35Q96QK1 CTNNA3-203ENST00000433211 10675 ntAPPRIS P1 TSL 1 (best) BASIC4.59□□□□□ -1.67
VPS35Q96QK1 MAP3K20-202ENST00000375213 3741 ntAPPRIS P1 TSL 1 (best) BASIC4.59□□□□□ -1.68
VPS35Q96QK1 CHD9-221ENST00000615216 10603 ntTSL 5 BASIC4.59□□□□□ -1.68
VPS35Q96QK1 CARF-203ENST00000414439 2099 ntTSL 2 BASIC4.58□□□□□ -1.68
VPS35Q96QK1 RBMS1-202ENST00000392753 3781 ntTSL 5 BASIC4.58□□□□□ -1.68
VPS35Q96QK1 GHR-213ENST00000622294 4312 ntTSL 5 BASIC4.58□□□□□ -1.68
VPS35Q96QK1 ADGRL2-203ENST00000370713 5382 ntTSL 1 (best) BASIC4.58□□□□□ -1.68
VPS35Q96QK1 CEP192-203ENST00000506447 7960 ntAPPRIS P2 TSL 5 BASIC4.58□□□□□ -1.68
VPS35Q96QK1 OR56B2P-201ENST00000317102 954 ntBASIC4.58□□□□□ -1.68
VPS35Q96QK1 ATP6V1G3-203ENST00000367382 611 ntAPPRIS P1 TSL 1 (best) BASIC4.58□□□□□ -1.68
VPS35Q96QK1 CDKN3-203ENST00000395577 637 ntTSL 5 BASIC4.58□□□□□ -1.68
VPS35Q96QK1 CYB5AP4-201ENST00000396692 399 ntBASIC4.58□□□□□ -1.68
VPS35Q96QK1 RPS3AP23-201ENST00000401762 784 ntBASIC4.58□□□□□ -1.68
VPS35Q96QK1 RNA5SP146-201ENST00000410743 123 ntBASIC4.58□□□□□ -1.68
VPS35Q96QK1 RPL37P18-201ENST00000411602 243 ntBASIC4.58□□□□□ -1.68
VPS35Q96QK1 AC003092.2-201ENST00000411946 446 ntTSL 2 BASIC4.58□□□□□ -1.68
VPS35Q96QK1 AC119751.6-201ENST00000416712 186 ntBASIC4.58□□□□□ -1.68
VPS35Q96QK1 ACAP2-IT1-201ENST00000419899 690 ntTSL 3 BASIC4.58□□□□□ -1.68
VPS35Q96QK1 AC092570.3-201ENST00000420113 693 ntBASIC4.58□□□□□ -1.68
VPS35Q96QK1 OR2X1P-201ENST00000421144 687 ntBASIC4.58□□□□□ -1.68
VPS35Q96QK1 GAPDHP49-201ENST00000421421 961 ntBASIC4.58□□□□□ -1.68
VPS35Q96QK1 AL445528.1-201ENST00000426330 420 ntBASIC4.58□□□□□ -1.68
VPS35Q96QK1 AC008278.2-201ENST00000438178 409 ntTSL 3 BASIC4.58□□□□□ -1.68
VPS35Q96QK1 YWHAZP2-201ENST00000440317 728 ntBASIC4.58□□□□□ -1.68
VPS35Q96QK1 FHP1-201ENST00000442741 703 ntBASIC4.58□□□□□ -1.68
VPS35Q96QK1 TDGF1P1-201ENST00000445734 527 ntBASIC4.58□□□□□ -1.68
VPS35Q96QK1 AL157827.1-201ENST00000447622 132 ntBASIC4.58□□□□□ -1.68
VPS35Q96QK1 AL162591.2-201ENST00000449634 317 ntBASIC4.58□□□□□ -1.68
VPS35Q96QK1 CEACAMP6-201ENST00000452007 574 ntBASIC4.58□□□□□ -1.68
VPS35Q96QK1 ISCUP1-201ENST00000454451 448 ntBASIC4.58□□□□□ -1.68
VPS35Q96QK1 FGF7P3-201ENST00000454645 303 ntBASIC4.58□□□□□ -1.68
VPS35Q96QK1 LINC01150-201ENST00000455671 315 ntTSL 1 (best) BASIC4.58□□□□□ -1.68
VPS35Q96QK1 ALDH7A1P3-201ENST00000492517 345 ntBASIC4.58□□□□□ -1.68
VPS35Q96QK1 KRTAP5-14P-201ENST00000502328 121 ntBASIC4.58□□□□□ -1.68
VPS35Q96QK1 LINC01181-201ENST00000503718 556 ntTSL 4 BASIC4.58□□□□□ -1.68
VPS35Q96QK1 HMGB1P47-201ENST00000511281 589 ntBASIC4.58□□□□□ -1.68
VPS35Q96QK1 AC010245.1-201ENST00000511329 754 ntTSL 3 BASIC4.58□□□□□ -1.68
VPS35Q96QK1 AC011396.2-202ENST00000511390 375 ntTSL 3 BASIC4.58□□□□□ -1.68
VPS35Q96QK1 AC027419.2-201ENST00000518439 497 ntTSL 3 BASIC4.58□□□□□ -1.68
VPS35Q96QK1 LINC01609-202ENST00000522778 566 ntTSL 2 BASIC4.58□□□□□ -1.68
VPS35Q96QK1 EIF4A2P3-201ENST00000525903 1055 ntBASIC4.58□□□□□ -1.68
VPS35Q96QK1 AC130404.1-201ENST00000539362 739 ntTSL 2 BASIC4.58□□□□□ -1.68
VPS35Q96QK1 MFAP5-211ENST00000540087 492 ntTSL 1 (best) BASIC4.58□□□□□ -1.68
VPS35Q96QK1 AC126178.1-201ENST00000548722 926 ntTSL 2 BASIC4.58□□□□□ -1.68
VPS35Q96QK1 AC079075.1-201ENST00000559543 878 ntBASIC4.58□□□□□ -1.68
VPS35Q96QK1 AC087501.4-201ENST00000574460 235 ntTSL 5 BASIC4.58□□□□□ -1.68
VPS35Q96QK1 AC002094.2-201ENST00000577850 1121 ntTSL 5 BASIC4.58□□□□□ -1.68
VPS35Q96QK1 AC090371.2-205ENST00000580366 490 ntTSL 3 BASIC4.58□□□□□ -1.68
VPS35Q96QK1 MAPKAPK5-AS1-205ENST00000590479 543 ntTSL 2 BASIC4.58□□□□□ -1.68
VPS35Q96QK1 MIMT1-201ENST00000597105 1050 ntBASIC4.58□□□□□ -1.68
VPS35Q96QK1 SLC35A1-205ENST00000622775 1206 ntTSL 5 BASIC4.58□□□□□ -1.68
VPS35Q96QK1 LINC00216-201ENST00000623548 1126 ntBASIC4.58□□□□□ -1.68
VPS35Q96QK1 AC012593.1-212ENST00000627058 580 ntTSL 5 BASIC4.58□□□□□ -1.68
VPS35Q96QK1 RUVBL2-213ENST00000639391 120 ntTSL 5 BASIC4.58□□□□□ -1.68
Retrieved 100 of 98,524 protein–RNA pairs in 155.1 ms