Protein–RNA interactions for Protein: P55317

FOXA1, Hepatocyte nuclear factor 3-alpha, humanhuman

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA1P55317 Y_RNA.625-201ENST00000411256 107 ntBASIC4.06□□□□□ -1.76
FOXA1P55317 RNU2-22P-201ENST00000411266 212 ntBASIC4.06□□□□□ -1.76
FOXA1P55317 VDAC1P6-201ENST00000430062 855 ntBASIC4.06□□□□□ -1.76
FOXA1P55317 AL512326.1-201ENST00000443050 721 ntBASIC4.06□□□□□ -1.76
FOXA1P55317 AC122136.1-201ENST00000443971 478 ntTSL 3 BASIC4.06□□□□□ -1.76
FOXA1P55317 SDCBP-205ENST00000447267 772 ntTSL 3 BASIC4.06□□□□□ -1.76
FOXA1P55317 SEPT14P1-201ENST00000458703 648 ntBASIC4.06□□□□□ -1.76
FOXA1P55317 AC096741.1-201ENST00000472250 846 ntBASIC4.06□□□□□ -1.76
FOXA1P55317 ATP5J2-209ENST00000488775 306 ntTSL 2 BASIC4.06□□□□□ -1.76
FOXA1P55317 RN7SL691P-201ENST00000494487 301 ntBASIC4.06□□□□□ -1.76
FOXA1P55317 ARHGEF3-AS1-202ENST00000495939 336 ntTSL 3 BASIC4.06□□□□□ -1.76
FOXA1P55317 AC025445.1-201ENST00000502728 300 ntBASIC4.06□□□□□ -1.76
FOXA1P55317 AC139783.2-201ENST00000504847 1145 ntBASIC4.06□□□□□ -1.76
FOXA1P55317 AC139713.2-213ENST00000505000 796 ntTSL 2 BASIC4.06□□□□□ -1.76
FOXA1P55317 AC093720.1-201ENST00000505681 714 ntBASIC4.06□□□□□ -1.76
FOXA1P55317 LINC02224-201ENST00000505706 584 ntTSL 4 BASIC4.06□□□□□ -1.76
FOXA1P55317 AC016598.2-201ENST00000514942 525 ntTSL 5 BASIC4.06□□□□□ -1.76
FOXA1P55317 HNRNPKP5-201ENST00000515300 253 ntBASIC4.06□□□□□ -1.76
FOXA1P55317 RNA5SP73-201ENST00000516744 108 ntBASIC4.06□□□□□ -1.76
FOXA1P55317 CDH12P4-201ENST00000517835 295 ntBASIC4.06□□□□□ -1.76
FOXA1P55317 CDH12P3-201ENST00000517935 295 ntBASIC4.06□□□□□ -1.76
FOXA1P55317 CDH12P1-201ENST00000518435 295 ntBASIC4.06□□□□□ -1.76
FOXA1P55317 AC010476.1-201ENST00000519111 851 ntBASIC4.06□□□□□ -1.76
FOXA1P55317 AC107373.1-201ENST00000522570 603 ntTSL 3 BASIC4.06□□□□□ -1.76
FOXA1P55317 ETFRF1-202ENST00000553788 708 ntTSL 3 BASIC4.06□□□□□ -1.76
FOXA1P55317 OR7A5-202ENST00000594432 1029 ntAPPRIS P1 BASIC4.06□□□□□ -1.76
FOXA1P55317 AL139041.1-201ENST00000605480 610 ntBASIC4.06□□□□□ -1.76
FOXA1P55317 AC090948.1-201ENST00000607464 549 ntBASIC4.06□□□□□ -1.76
FOXA1P55317 SLC38A2-214ENST00000612232 1221 ntTSL 1 (best) BASIC4.06□□□□□ -1.76
FOXA1P55317 LINC00706-201ENST00000628989 699 ntTSL 3 BASIC4.06□□□□□ -1.76
FOXA1P55317 RBMS1-202ENST00000392753 3781 ntTSL 5 BASIC4.06□□□□□ -1.76
FOXA1P55317 ANKRD30A-202ENST00000374660 4762 ntAPPRIS ALT2 TSL 5 BASIC4.06□□□□□ -1.76
FOXA1P55317 TMEM106B-201ENST00000396667 12539 ntAPPRIS P1 TSL 1 (best) BASIC4.06□□□□□ -1.76
FOXA1P55317 LZTFL1-216ENST00000539217 4113 ntTSL 2 BASIC4.06□□□□□ -1.76
FOXA1P55317 ANKRD30A-204ENST00000602533 4458 ntAPPRIS ALT2 TSL 5 BASIC4.06□□□□□ -1.76
FOXA1P55317 GHR-213ENST00000622294 4312 ntTSL 5 BASIC4.06□□□□□ -1.76
FOXA1P55317 TMEM30A-202ENST00000370050 3775 ntTSL 1 (best) BASIC4.06□□□□□ -1.76
FOXA1P55317 CD200R1-204ENST00000471858 3679 ntAPPRIS ALT2 TSL 1 (best) BASIC4.06□□□□□ -1.76
FOXA1P55317 ORC4-202ENST00000392857 6530 ntAPPRIS P1 TSL 1 (best) BASIC4.05□□□□□ -1.76
FOXA1P55317 CNTRL-201ENST00000238341 7431 ntAPPRIS P1 TSL 1 (best) BASIC4.05□□□□□ -1.76
FOXA1P55317 RIMS2-201ENST00000262231 3854 ntTSL 1 (best) BASIC4.05□□□□□ -1.76
FOXA1P55317 AC087190.4-201ENST00000574616 8334 ntBASIC4.05□□□□□ -1.76
FOXA1P55317 MTCO1P22-201ENST00000604619 1360 ntBASIC4.05□□□□□ -1.76
FOXA1P55317 ZNF638-203ENST00000409544 6821 ntAPPRIS P1 TSL 1 (best) BASIC4.05□□□□□ -1.76
FOXA1P55317 KANSL1L-209ENST00000457374 2264 ntTSL 2 BASIC4.05□□□□□ -1.76
FOXA1P55317 OTUD6B-AS1-201ENST00000522817 4275 ntTSL 2 BASIC4.05□□□□□ -1.76
FOXA1P55317 OR6X1-201ENST00000327930 1058 ntAPPRIS P1 BASIC4.05□□□□□ -1.76
FOXA1P55317 RNU1-14P-201ENST00000362759 152 ntBASIC4.05□□□□□ -1.76
FOXA1P55317 RNU6-673P-201ENST00000365084 104 ntBASIC4.05□□□□□ -1.76
FOXA1P55317 KRTAP19-8-201ENST00000382822 318 ntAPPRIS P1 BASIC4.05□□□□□ -1.76
FOXA1P55317 TRAJ35-201ENST00000390502 59 ntAPPRIS P1 BASIC4.05□□□□□ -1.76
FOXA1P55317 RPS16P5-201ENST00000406501 404 ntBASIC4.05□□□□□ -1.76
FOXA1P55317 AL590139.1-201ENST00000416267 400 ntBASIC4.05□□□□□ -1.76
FOXA1P55317 NANOGP6-201ENST00000429190 847 ntBASIC4.05□□□□□ -1.76
FOXA1P55317 AL162726.1-201ENST00000436084 455 ntTSL 3 BASIC4.05□□□□□ -1.76
FOXA1P55317 LINC01878-202ENST00000453965 405 ntTSL 3 BASIC4.05□□□□□ -1.76
FOXA1P55317 RAD23BP3-201ENST00000454157 1152 ntBASIC4.05□□□□□ -1.76
FOXA1P55317 AC117430.1-201ENST00000474711 801 ntTSL 5 BASIC4.05□□□□□ -1.76
FOXA1P55317 RN7SKP92-201ENST00000517266 244 ntBASIC4.05□□□□□ -1.76
FOXA1P55317 TRAPPC2P2-201ENST00000517589 409 ntBASIC4.05□□□□□ -1.76
FOXA1P55317 IGHV3-63-201ENST00000518422 341 ntBASIC4.05□□□□□ -1.76
FOXA1P55317 AC084291.1-201ENST00000544667 548 ntTSL 2 BASIC4.05□□□□□ -1.76
FOXA1P55317 AC090515.3-201ENST00000560431 315 ntBASIC4.05□□□□□ -1.76
FOXA1P55317 AC091117.1-201ENST00000560967 426 ntTSL 5 BASIC4.05□□□□□ -1.76
FOXA1P55317 AC105036.1-201ENST00000566222 271 ntBASIC4.05□□□□□ -1.76
FOXA1P55317 AP001011.1-202ENST00000581172 667 ntTSL 3 BASIC4.05□□□□□ -1.76
FOXA1P55317 LINC00993-204ENST00000606476 500 ntTSL 5 BASIC4.05□□□□□ -1.76
FOXA1P55317 AL133406.3-201ENST00000606817 541 ntBASIC4.05□□□□□ -1.76
FOXA1P55317 MIR7702-201ENST00000621931 59 ntBASIC4.05□□□□□ -1.76
FOXA1P55317 AP003497.2-201ENST00000624220 967 ntBASIC4.05□□□□□ -1.76
FOXA1P55317 PCBP1-AS1-307ENST00000627050 912 ntTSL 5 BASIC4.05□□□□□ -1.76
FOXA1P55317 ZFHX4-207ENST00000521891 14019 ntAPPRIS P2 TSL 5 BASIC4.05□□□□□ -1.76
FOXA1P55317 GHR-208ENST00000612382 4699 ntAPPRIS P1 TSL 5 BASIC4.05□□□□□ -1.76
FOXA1P55317 CDC27P2-201ENST00000425026 1922 ntBASIC4.05□□□□□ -1.76
FOXA1P55317 OR5AQ1P-202ENST00000641257 1534 ntBASIC4.05□□□□□ -1.76
FOXA1P55317 ASAH2-201ENST00000329428 2184 ntTSL 1 (best) BASIC4.04□□□□□ -1.76
FOXA1P55317 MARK2P15-201ENST00000432204 2186 ntBASIC4.04□□□□□ -1.76
FOXA1P55317 ZFYVE16-201ENST00000338008 6773 ntAPPRIS P1 TSL 1 (best) BASIC4.04□□□□□ -1.76
FOXA1P55317 OSBPL6-201ENST00000190611 10513 ntAPPRIS P3 TSL 1 (best) BASIC4.04□□□□□ -1.76
FOXA1P55317 OR8D1-202ENST00000641015 8286 ntAPPRIS P1 BASIC4.04□□□□□ -1.76
FOXA1P55317 NRIP1-201ENST00000318948 7556 ntAPPRIS P1 TSL 2 BASIC4.04□□□□□ -1.76
FOXA1P55317 BAALC-AS1-201ENST00000499522 1353 ntTSL 5 BASIC4.04□□□□□ -1.76
FOXA1P55317 PDE1A-202ENST00000358139 2015 ntAPPRIS ALT2 TSL 2 BASIC4.04□□□□□ -1.76
FOXA1P55317 DNAJC10-208ENST00000537515 1669 ntTSL 1 (best) BASIC4.04□□□□□ -1.76
FOXA1P55317 OR2J3-201ENST00000377169 1325 ntAPPRIS P1 BASIC4.04□□□□□ -1.76
FOXA1P55317 MFSD8-242ENST00000641690 4199 ntBASIC4.04□□□□□ -1.76
FOXA1P55317 PSG11-201ENST00000306322 990 ntTSL 1 (best) BASIC4.04□□□□□ -1.76
FOXA1P55317 TRAV35-201ENST00000390462 330 ntBASIC4.04□□□□□ -1.76
FOXA1P55317 CCL7-202ENST00000394627 696 ntTSL 3 BASIC4.04□□□□□ -1.76
FOXA1P55317 RPS24P12-201ENST00000402084 394 ntBASIC4.04□□□□□ -1.76
FOXA1P55317 AC096559.1-201ENST00000414086 399 ntTSL 2 BASIC4.04□□□□□ -1.76
FOXA1P55317 AL359633.2-201ENST00000415787 622 ntTSL 1 (best) BASIC4.04□□□□□ -1.76
FOXA1P55317 AC092570.3-201ENST00000420113 693 ntBASIC4.04□□□□□ -1.76
FOXA1P55317 LINC01745-201ENST00000430921 372 ntTSL 5 BASIC4.04□□□□□ -1.76
FOXA1P55317 AL772161.1-201ENST00000439130 476 ntBASIC4.04□□□□□ -1.76
FOXA1P55317 AP000844.1-201ENST00000446631 577 ntTSL 3 BASIC4.04□□□□□ -1.76
FOXA1P55317 AL512328.1-202ENST00000452640 850 ntTSL 3 BASIC4.04□□□□□ -1.76
FOXA1P55317 LMOD2-201ENST00000456238 918 ntTSL 1 (best) BASIC4.04□□□□□ -1.76
FOXA1P55317 MTND2P28-201ENST00000457540 1044 ntBASIC4.04□□□□□ -1.76
FOXA1P55317 AC109327.1-201ENST00000471666 403 ntBASIC4.04□□□□□ -1.76
Retrieved 100 of 98,524 protein–RNA pairs in 75.1 ms