Protein–RNA interactions for Protein: P52701

MSH6, DNA mismatch repair protein Msh6, humanhuman

Predictions only

Length 1,360 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6P52701 TPT1-AS1-216ENST00000522845 403 ntTSL 3 BASIC6.05□□□□□ -1.44
MSH6P52701 C15orf41-203ENST00000562489 715 ntTSL 2 BASIC6.05□□□□□ -1.44
MSH6P52701 AC009852.2-201ENST00000567898 485 ntBASIC6.05□□□□□ -1.44
MSH6P52701 MMP2-AS1-202ENST00000569037 553 ntTSL 5 BASIC6.05□□□□□ -1.44
MSH6P52701 AL354984.3-201ENST00000604803 325 ntBASIC6.05□□□□□ -1.44
MSH6P52701 AC019176.2-201ENST00000611579 315 ntBASIC6.05□□□□□ -1.44
MSH6P52701 AC018816.2-201ENST00000621460 353 ntBASIC6.05□□□□□ -1.44
MSH6P52701 LINC01358-205ENST00000625548 874 ntTSL 5 BASIC6.05□□□□□ -1.44
MSH6P52701 AC099654.11-201ENST00000638857 294 ntBASIC6.05□□□□□ -1.44
MSH6P52701 PTPRC-201ENST00000348564 4626 ntAPPRIS ALT2 TSL 1 (best) BASIC6.05□□□□□ -1.44
MSH6P52701 RACGAP1-202ENST00000427314 3229 ntAPPRIS P1 TSL 1 (best) BASIC6.05□□□□□ -1.44
MSH6P52701 TCP11X1-203ENST00000623912 1715 ntTSL 5 BASIC6.05□□□□□ -1.44
MSH6P52701 ZBTB38-220ENST00000514251 7683 ntAPPRIS P1 TSL 2 BASIC6.04□□□□□ -1.44
MSH6P52701 ZNF81-202ENST00000338637 7859 ntAPPRIS P1 TSL 3 BASIC6.04□□□□□ -1.44
MSH6P52701 ELF1-204ENST00000625359 2032 ntTSL 2 BASIC6.04□□□□□ -1.44
MSH6P52701 ALMS1-IT1-201ENST00000441587 2107 ntTSL 1 (best) BASIC6.04□□□□□ -1.44
MSH6P52701 GPR18-201ENST00000340807 1698 ntAPPRIS P1 TSL 1 (best) BASIC6.04□□□□□ -1.44
MSH6P52701 AL022393.1-201ENST00000625142 1677 ntBASIC6.04□□□□□ -1.44
MSH6P52701 CDK15-204ENST00000450471 3659 ntAPPRIS ALT1 TSL 1 (best) BASIC6.04□□□□□ -1.44
MSH6P52701 LCA5L-203ENST00000380671 2080 ntAPPRIS P1 TSL 1 (best) BASIC6.04□□□□□ -1.44
MSH6P52701 AC099654.3-201ENST00000447087 1546 ntBASIC6.04□□□□□ -1.44
MSH6P52701 AC112198.2-201ENST00000426589 6996 ntBASIC6.04□□□□□ -1.44
MSH6P52701 FAP-203ENST00000443424 2598 ntTSL 2 BASIC6.04□□□□□ -1.44
MSH6P52701 GRID2-208ENST00000611049 4844 ntTSL 1 (best) BASIC6.04□□□□□ -1.44
MSH6P52701 AC012506.4-201ENST00000421563 541 ntTSL 4 BASIC6.04□□□□□ -1.44
MSH6P52701 NOTCH2P1-201ENST00000443481 624 ntBASIC6.04□□□□□ -1.44
MSH6P52701 AP002989.1-201ENST00000533459 562 ntTSL 4 BASIC6.04□□□□□ -1.44
MSH6P52701 AC009137.1-201ENST00000562790 260 ntTSL 3 BASIC6.04□□□□□ -1.44
MSH6P52701 ADAD1P2-201ENST00000588476 646 ntBASIC6.04□□□□□ -1.44
MSH6P52701 AC004160.1-202ENST00000599917 578 ntTSL 5 BASIC6.04□□□□□ -1.44
MSH6P52701 C2orf91-203ENST00000615044 393 ntAPPRIS ALT2 TSL 5 BASIC6.04□□□□□ -1.44
MSH6P52701 MALAT1-210ENST00000617489 318 ntTSL 2 BASIC6.04□□□□□ -1.44
MSH6P52701 AL357559.1-201ENST00000622228 274 ntBASIC6.04□□□□□ -1.44
MSH6P52701 SDR42E1-201ENST00000328945 11566 ntAPPRIS P1 TSL 1 (best) BASIC6.04□□□□□ -1.44
MSH6P52701 MYO16-201ENST00000251041 3492 ntTSL 5 BASIC6.04□□□□□ -1.44
MSH6P52701 NUDT12-202ENST00000507423 1781 ntTSL 2 BASIC6.03□□□□□ -1.44
MSH6P52701 TMEM71-210ENST00000523829 1974 ntAPPRIS ALT2 TSL 5 BASIC6.03□□□□□ -1.44
MSH6P52701 ACE2-202ENST00000427411 3507 ntAPPRIS P1 TSL 1 (best) BASIC6.03□□□□□ -1.44
MSH6P52701 ZNF704-201ENST00000327835 14386 ntAPPRIS P1 TSL 1 (best) BASIC6.03□□□□□ -1.44
MSH6P52701 GYS2-201ENST00000261195 3132 ntAPPRIS P1 TSL 1 (best) BASIC6.03□□□□□ -1.44
MSH6P52701 FUT9-201ENST00000302103 12783 ntAPPRIS P1 TSL 1 (best) BASIC6.03□□□□□ -1.44
MSH6P52701 LINC01902-202ENST00000636983 4607 ntTSL 5 BASIC6.03□□□□□ -1.44
MSH6P52701 GABRG2-224ENST00000640574 3150 ntTSL 5 BASIC6.03□□□□□ -1.44
MSH6P52701 FSBP-203ENST00000611249 2181 ntAPPRIS P1 TSL 5 BASIC6.03□□□□□ -1.44
MSH6P52701 KRTAP24-1-201ENST00000340345 1650 ntAPPRIS P1 BASIC6.03□□□□□ -1.44
MSH6P52701 OR13G1-201ENST00000359688 1046 ntAPPRIS P1 BASIC6.03□□□□□ -1.44
MSH6P52701 RNU11-4P-201ENST00000391149 133 ntBASIC6.03□□□□□ -1.44
MSH6P52701 PPIAP13-201ENST00000434706 478 ntBASIC6.03□□□□□ -1.44
MSH6P52701 AL590999.1-206ENST00000437947 436 ntTSL 3 BASIC6.03□□□□□ -1.44
MSH6P52701 AC104651.2-201ENST00000447549 528 ntBASIC6.03□□□□□ -1.44
MSH6P52701 AC010894.4-201ENST00000454203 457 ntTSL 3 BASIC6.03□□□□□ -1.44
MSH6P52701 AL353633.1-201ENST00000458480 382 ntTSL 3 BASIC6.03□□□□□ -1.44
MSH6P52701 SNORA59A-201ENST00000459326 152 ntBASIC6.03□□□□□ -1.44
MSH6P52701 GAPDHP36-201ENST00000480688 918 ntBASIC6.03□□□□□ -1.44
MSH6P52701 AC016885.1-201ENST00000517796 532 ntTSL 4 BASIC6.03□□□□□ -1.44
MSH6P52701 AC023762.1-201ENST00000603280 584 ntBASIC6.03□□□□□ -1.44
MSH6P52701 PACRG-211ENST00000621363 360 ntTSL 5 BASIC6.03□□□□□ -1.44
MSH6P52701 AC015804.1-201ENST00000622935 435 ntBASIC6.03□□□□□ -1.44
MSH6P52701 KCNJ1-202ENST00000324036 2614 ntAPPRIS P1 TSL 1 (best) BASIC6.03□□□□□ -1.44
MSH6P52701 NHSL2-204ENST00000631375 12593 ntTSL 5 BASIC6.03□□□□□ -1.44
MSH6P52701 HIF1AN-201ENST00000299163 13011 ntAPPRIS P1 TSL 1 (best) BASIC6.03□□□□□ -1.44
MSH6P52701 LMNTD1-202ENST00000413632 1520 ntTSL 1 (best) BASIC6.02□□□□□ -1.45
MSH6P52701 NBPF10-202ENST00000617010 11630 ntTSL 5 BASIC6.02□□□□□ -1.45
MSH6P52701 BBX-204ENST00000406780 3674 ntAPPRIS P3 TSL 5 BASIC6.02□□□□□ -1.45
MSH6P52701 HGF-201ENST00000222390 5989 ntAPPRIS P3 TSL 1 (best) BASIC6.02□□□□□ -1.45
MSH6P52701 SLC9C1-201ENST00000305815 4172 ntAPPRIS P3 TSL 2 BASIC6.02□□□□□ -1.45
MSH6P52701 AC139769.1-204ENST00000472297 1931 ntBASIC6.02□□□□□ -1.45
MSH6P52701 ARFGEF2-201ENST00000371917 8852 ntAPPRIS P1 TSL 1 (best) BASIC6.02□□□□□ -1.45
MSH6P52701 ZFX-203ENST00000379177 7558 ntAPPRIS P1 TSL 1 (best) BASIC6.02□□□□□ -1.45
MSH6P52701 KRTAP19-8-201ENST00000382822 318 ntAPPRIS P1 BASIC6.02□□□□□ -1.45
MSH6P52701 RAB9AP3-201ENST00000412737 573 ntBASIC6.02□□□□□ -1.45
MSH6P52701 AF240627.1-201ENST00000416002 879 ntTSL 3 BASIC6.02□□□□□ -1.45
MSH6P52701 ARAFP1-201ENST00000422172 605 ntBASIC6.02□□□□□ -1.45
MSH6P52701 TNKS2-AS1-201ENST00000432246 609 ntTSL 2 BASIC6.02□□□□□ -1.45
MSH6P52701 AC004938.1-201ENST00000438468 308 ntBASIC6.02□□□□□ -1.45
MSH6P52701 AL035443.1-202ENST00000442841 586 ntTSL 2 BASIC6.02□□□□□ -1.45
MSH6P52701 RAB9AP1-201ENST00000449393 573 ntBASIC6.02□□□□□ -1.45
MSH6P52701 PANCR-201ENST00000503456 493 ntTSL 5 BASIC6.02□□□□□ -1.45
MSH6P52701 AC025470.2-201ENST00000506106 897 ntTSL 2 BASIC6.02□□□□□ -1.45
MSH6P52701 SNHG1-208ENST00000538266 347 ntTSL 3 BASIC6.02□□□□□ -1.45
MSH6P52701 AC128707.1-201ENST00000552230 494 ntTSL 3 BASIC6.02□□□□□ -1.45
MSH6P52701 AC087477.6-201ENST00000559595 843 ntBASIC6.02□□□□□ -1.45
MSH6P52701 AC015912.2-201ENST00000571053 181 ntBASIC6.02□□□□□ -1.45
MSH6P52701 AP000569.1-201ENST00000607953 591 ntTSL 2 BASIC6.02□□□□□ -1.45
MSH6P52701 LINC00343-210ENST00000608220 806 ntTSL 5 BASIC6.02□□□□□ -1.45
MSH6P52701 MIR6500-201ENST00000622700 86 ntBASIC6.02□□□□□ -1.45
MSH6P52701 AC023632.6-201ENST00000624338 2177 ntBASIC6.02□□□□□ -1.45
MSH6P52701 ATP8B4-211ENST00000559829 4894 ntAPPRIS P1 TSL 5 BASIC6.02□□□□□ -1.45
MSH6P52701 STAG2-205ENST00000371160 6045 ntAPPRIS P3 TSL 1 (best) BASIC6.02□□□□□ -1.45
MSH6P52701 AP001002.1-201ENST00000625148 1513 ntBASIC6.02□□□□□ -1.45
MSH6P52701 AC079915.1-201ENST00000584382 2780 ntTSL 2 BASIC6.02□□□□□ -1.45
MSH6P52701 UGP2-229ENST00000613823 1858 ntAPPRIS ALT1 TSL 5 BASIC6.02□□□□□ -1.45
MSH6P52701 PPP1R9A-201ENST00000289495 3983 ntTSL 1 (best) BASIC6.01□□□□□ -1.45
MSH6P52701 SLC26A7-209ENST00000617078 5094 ntTSL 5 BASIC6.01□□□□□ -1.45
MSH6P52701 ACADSB-201ENST00000358776 5859 ntAPPRIS P1 TSL 1 (best) BASIC6.01□□□□□ -1.45
MSH6P52701 AC115285.1-201ENST00000424879 736 ntBASIC6.01□□□□□ -1.45
MSH6P52701 AL583835.2-201ENST00000435483 500 ntTSL 2 BASIC6.01□□□□□ -1.45
MSH6P52701 AL031963.1-201ENST00000447644 695 ntTSL 3 BASIC6.01□□□□□ -1.45
MSH6P52701 ACTR3P3-201ENST00000480448 893 ntBASIC6.01□□□□□ -1.45
MSH6P52701 SNORA70.24-201ENST00000517233 118 ntBASIC6.01□□□□□ -1.45
Retrieved 100 of 98,524 protein–RNA pairs in 124.3 ms