Protein–RNA interactions for Protein: P41235

HNF4A, Hepatocyte nuclear factor 4-alpha, humanhuman

Predictions only

Length 474 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HNF4AP41235 AC013244.1-201ENST00000604279 193 ntBASIC4.8□□□□□ -1.64
HNF4AP41235 AC104687.2-201ENST00000604442 342 ntBASIC4.8□□□□□ -1.64
HNF4AP41235 AC093799.2-201ENST00000610062 578 ntBASIC4.8□□□□□ -1.64
HNF4AP41235 AL356490.1-201ENST00000623079 479 ntBASIC4.8□□□□□ -1.64
HNF4AP41235 AC090617.9-201ENST00000623751 147 ntBASIC4.8□□□□□ -1.64
HNF4AP41235 AP000843.1-201ENST00000624880 701 ntBASIC4.8□□□□□ -1.64
HNF4AP41235 RNF123-214ENST00000629802 207 ntTSL 5 BASIC4.8□□□□□ -1.64
HNF4AP41235 SATB1-AS1-263ENST00000630022 622 ntTSL 5 BASIC4.8□□□□□ -1.64
HNF4AP41235 OR8B2-202ENST00000641451 1056 ntAPPRIS P1 BASIC4.8□□□□□ -1.64
HNF4AP41235 C15orf41-212ENST00000567389 2618 ntTSL 1 (best) BASIC4.8□□□□□ -1.64
HNF4AP41235 MRE11-202ENST00000323977 2588 ntTSL 1 (best) BASIC4.8□□□□□ -1.64
HNF4AP41235 AL139811.1-201ENST00000424779 2299 ntBASIC4.8□□□□□ -1.64
HNF4AP41235 MLIP-213ENST00000514921 5743 ntAPPRIS ALT2 TSL 1 (best) BASIC4.8□□□□□ -1.64
HNF4AP41235 LYST-202ENST00000389794 12985 ntTSL 5 BASIC4.8□□□□□ -1.64
HNF4AP41235 RGS5-212ENST00000618415 5812 ntTSL 4 BASIC4.8□□□□□ -1.64
HNF4AP41235 GABRA2-211ENST00000514090 3401 ntAPPRIS P1 TSL 5 BASIC4.79□□□□□ -1.64
HNF4AP41235 SCN1A-220ENST00000641603 12506 ntBASIC4.79□□□□□ -1.64
HNF4AP41235 IL13RA2-201ENST00000243213 1371 ntAPPRIS P1 TSL 1 (best) BASIC4.79□□□□□ -1.64
HNF4AP41235 FAM184A-204ENST00000368475 3392 ntTSL 2 BASIC4.79□□□□□ -1.64
HNF4AP41235 CCSER2-210ENST00000543283 5888 ntTSL 2 BASIC4.79□□□□□ -1.64
HNF4AP41235 IRAK1BP1-204ENST00000607739 1387 ntTSL 2 BASIC4.79□□□□□ -1.64
HNF4AP41235 TMEM68-202ENST00000434581 2549 ntAPPRIS P1 TSL 5 BASIC4.79□□□□□ -1.64
HNF4AP41235 ASTE1-208ENST00000514044 2504 ntTSL 1 (best) BASIC4.79□□□□□ -1.64
HNF4AP41235 ZNF445-201ENST00000396077 18299 ntAPPRIS P1 TSL 1 (best) BASIC4.79□□□□□ -1.64
HNF4AP41235 PLET1-201ENST00000338832 1215 ntAPPRIS P1 TSL 5 BASIC4.79□□□□□ -1.64
HNF4AP41235 RNU1-87P-201ENST00000363727 170 ntBASIC4.79□□□□□ -1.64
HNF4AP41235 AC234782.4-201ENST00000417646 1048 ntBASIC4.79□□□□□ -1.64
HNF4AP41235 TMEM196-204ENST00000433641 768 ntTSL 1 (best) BASIC4.79□□□□□ -1.64
HNF4AP41235 AL627308.1-201ENST00000435693 821 ntBASIC4.79□□□□□ -1.64
HNF4AP41235 RPL7P29-201ENST00000437151 728 ntBASIC4.79□□□□□ -1.64
HNF4AP41235 AC073052.1-201ENST00000440417 714 ntBASIC4.79□□□□□ -1.64
HNF4AP41235 AC007000.2-201ENST00000442564 487 ntBASIC4.79□□□□□ -1.64
HNF4AP41235 MTOR-AS1-202ENST00000445982 705 ntTSL 5 BASIC4.79□□□□□ -1.64
HNF4AP41235 AC017067.1-201ENST00000448570 447 ntTSL 5 BASIC4.79□□□□□ -1.64
HNF4AP41235 AC068492.1-201ENST00000448672 469 ntTSL 3 BASIC4.79□□□□□ -1.64
HNF4AP41235 AC073850.1-201ENST00000449243 255 ntBASIC4.79□□□□□ -1.64
HNF4AP41235 AC026347.1-201ENST00000463255 474 ntTSL 3 BASIC4.79□□□□□ -1.64
HNF4AP41235 GSTM1-206ENST00000483399 512 ntTSL 3 BASIC4.79□□□□□ -1.64
HNF4AP41235 RPL30P11-201ENST00000495304 339 ntBASIC4.79□□□□□ -1.64
HNF4AP41235 AC113430.1-201ENST00000506872 718 ntBASIC4.79□□□□□ -1.64
HNF4AP41235 RPL37-204ENST00000508493 553 ntAPPRIS ALT1 TSL 1 (best) BASIC4.79□□□□□ -1.64
HNF4AP41235 LINC01088-208ENST00000511895 795 ntTSL 2 BASIC4.79□□□□□ -1.64
HNF4AP41235 LINC02358-201ENST00000514413 465 ntTSL 5 BASIC4.79□□□□□ -1.64
HNF4AP41235 RN7SKP46-201ENST00000515942 234 ntBASIC4.79□□□□□ -1.64
HNF4AP41235 RNA5SP43-201ENST00000516559 110 ntBASIC4.79□□□□□ -1.64
HNF4AP41235 AC027308.1-201ENST00000517993 110 ntBASIC4.79□□□□□ -1.64
HNF4AP41235 AC062004.1-201ENST00000518706 686 ntTSL 3 BASIC4.79□□□□□ -1.64
HNF4AP41235 C14orf105-210ENST00000534126 1030 ntAPPRIS ALT1 TSL 1 (best) BASIC4.79□□□□□ -1.64
HNF4AP41235 AC025260.1-201ENST00000548858 430 ntBASIC4.79□□□□□ -1.64
HNF4AP41235 AL136501.1-201ENST00000555913 790 ntTSL 2 BASIC4.79□□□□□ -1.64
HNF4AP41235 AC122134.1-202ENST00000569111 1201 ntBASIC4.79□□□□□ -1.64
HNF4AP41235 AC005324.5-201ENST00000584540 571 ntTSL 5 BASIC4.79□□□□□ -1.64
HNF4AP41235 AC010511.1-202ENST00000590229 573 ntTSL 4 BASIC4.79□□□□□ -1.64
HNF4AP41235 AC087763.1-201ENST00000603391 286 ntBASIC4.79□□□□□ -1.64
HNF4AP41235 AC018618.2-201ENST00000604770 446 ntBASIC4.79□□□□□ -1.64
HNF4AP41235 AC079610.2-201ENST00000604818 690 ntBASIC4.79□□□□□ -1.64
HNF4AP41235 AC005377.1-201ENST00000605126 456 ntBASIC4.79□□□□□ -1.64
HNF4AP41235 AC026790.2-201ENST00000606282 430 ntBASIC4.79□□□□□ -1.64
HNF4AP41235 AP000240.1-201ENST00000609910 452 ntBASIC4.79□□□□□ -1.64
HNF4AP41235 AL627230.1-201ENST00000613077 211 ntBASIC4.79□□□□□ -1.64
HNF4AP41235 EIF3FP1-201ENST00000613970 806 ntBASIC4.79□□□□□ -1.64
HNF4AP41235 AL591926.8-201ENST00000616876 211 ntBASIC4.79□□□□□ -1.64
HNF4AP41235 LINC00901.1-201ENST00000617252 152 ntBASIC4.79□□□□□ -1.64
HNF4AP41235 GXYLT1P5-202ENST00000618830 589 ntTSL 5 BASIC4.79□□□□□ -1.64
HNF4AP41235 AL023881.1-201ENST00000621088 301 ntBASIC4.79□□□□□ -1.64
HNF4AP41235 MIR6719-201ENST00000622428 87 ntBASIC4.79□□□□□ -1.64
HNF4AP41235 CCDC25-212ENST00000640944 261 ntTSL 5 BASIC4.79□□□□□ -1.64
HNF4AP41235 RC3H1-201ENST00000258349 10988 ntAPPRIS P3 TSL 1 (best) BASIC4.79□□□□□ -1.64
HNF4AP41235 GPR18-202ENST00000397470 1468 ntAPPRIS P1 TSL 1 (best) BASIC4.79□□□□□ -1.64
HNF4AP41235 GPR34-202ENST00000378142 1928 ntAPPRIS P1 TSL 1 (best) BASIC4.79□□□□□ -1.64
HNF4AP41235 ELF2-203ENST00000379550 3278 ntTSL 5 BASIC4.79□□□□□ -1.64
HNF4AP41235 AC134882.1-201ENST00000603738 1676 ntBASIC4.79□□□□□ -1.64
HNF4AP41235 GRIK2-201ENST00000318991 4317 ntTSL 5 BASIC4.79□□□□□ -1.64
HNF4AP41235 AC098798.1-201ENST00000503998 1447 ntTSL 5 BASIC4.79□□□□□ -1.64
HNF4AP41235 LINC00989-201ENST00000508174 2080 ntTSL 3 BASIC4.79□□□□□ -1.64
HNF4AP41235 EMCN-201ENST00000296420 4037 ntAPPRIS P3 TSL 1 (best) BASIC4.79□□□□□ -1.64
HNF4AP41235 LINC02030-201ENST00000492683 1602 ntTSL 5 BASIC4.79□□□□□ -1.64
HNF4AP41235 RNMT-203ENST00000543302 1849 ntAPPRIS P1 TSL 1 (best) BASIC4.79□□□□□ -1.64
HNF4AP41235 BAALC-AS1-201ENST00000499522 1353 ntTSL 5 BASIC4.78□□□□□ -1.64
HNF4AP41235 ATP2C1-205ENST00000504381 3498 ntTSL 2 BASIC4.78□□□□□ -1.64
HNF4AP41235 MYBPC1-204ENST00000452455 3861 ntAPPRIS ALT2 TSL 2 BASIC4.78□□□□□ -1.64
HNF4AP41235 ZBTB38-201ENST00000321464 3588 ntAPPRIS P1 BASIC4.78□□□□□ -1.64
HNF4AP41235 DMXL2-203ENST00000543779 10400 ntAPPRIS ALT2 TSL 1 (best) BASIC4.78□□□□□ -1.64
HNF4AP41235 ACE2-202ENST00000427411 3507 ntAPPRIS P1 TSL 1 (best) BASIC4.78□□□□□ -1.64
HNF4AP41235 FAM204A-203ENST00000369183 13889 ntAPPRIS P1 TSL 1 (best) BASIC4.78□□□□□ -1.64
HNF4AP41235 ELSPBP1-201ENST00000339841 1052 ntAPPRIS P2 TSL 1 (best) BASIC4.78□□□□□ -1.64
HNF4AP41235 SAMD13-204ENST00000370671 724 ntTSL 3 BASIC4.78□□□□□ -1.64
HNF4AP41235 RPL23AP27-201ENST00000415161 451 ntBASIC4.78□□□□□ -1.64
HNF4AP41235 TMBIM7P-201ENST00000418074 855 ntBASIC4.78□□□□□ -1.64
HNF4AP41235 AC073333.1-201ENST00000418907 648 ntTSL 3 BASIC4.78□□□□□ -1.64
HNF4AP41235 AC066595.1-201ENST00000426697 399 ntTSL 3 BASIC4.78□□□□□ -1.64
HNF4AP41235 MAGI2-AS3-204ENST00000426835 738 ntTSL 3 BASIC4.78□□□□□ -1.64
HNF4AP41235 AC023128.1-201ENST00000432431 799 ntTSL 3 BASIC4.78□□□□□ -1.64
HNF4AP41235 AC092162.1-201ENST00000432828 434 ntBASIC4.78□□□□□ -1.64
HNF4AP41235 FTH1P16-201ENST00000435241 552 ntBASIC4.78□□□□□ -1.64
HNF4AP41235 LINC00446-202ENST00000438327 357 ntTSL 3 BASIC4.78□□□□□ -1.64
HNF4AP41235 FAM237A-201ENST00000441223 773 ntAPPRIS P1 TSL 2 BASIC4.78□□□□□ -1.64
HNF4AP41235 AL137845.2-201ENST00000444292 988 ntBASIC4.78□□□□□ -1.64
HNF4AP41235 KRTAP21-3-201ENST00000444335 253 ntAPPRIS P1 BASIC4.78□□□□□ -1.64
HNF4AP41235 MTND2P25-201ENST00000449028 610 ntBASIC4.78□□□□□ -1.64
Retrieved 100 of 98,524 protein–RNA pairs in 90.1 ms