Protein–RNA interactions for Protein: P35548

MSX2, Homeobox protein MSX-2, humanhuman

Predicted RBP Predictions only

Length 267 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX2P35548 AC002553.3-201ENST00000453002 341 ntBASIC5.44□□□□□ -1.54
MSX2P35548 HSPE1P22-201ENST00000456856 327 ntBASIC5.44□□□□□ -1.54
MSX2P35548 PSAT1P4-201ENST00000466500 526 ntBASIC5.44□□□□□ -1.54
MSX2P35548 BNIP3P41-201ENST00000503774 571 ntBASIC5.44□□□□□ -1.54
MSX2P35548 CDH12P2-201ENST00000504393 298 ntBASIC5.44□□□□□ -1.54
MSX2P35548 AC008957.1-203ENST00000508745 589 ntTSL 3 BASIC5.44□□□□□ -1.54
MSX2P35548 GTF2H2C-212ENST00000512736 832 ntTSL 1 (best) BASIC5.44□□□□□ -1.54
MSX2P35548 AC116424.1-203ENST00000513940 671 ntTSL 3 BASIC5.44□□□□□ -1.54
MSX2P35548 CNBD1-202ENST00000518476 1594 ntAPPRIS P2 TSL 1 (best) BASIC5.44□□□□□ -1.54
MSX2P35548 AC083923.2-201ENST00000519880 574 ntTSL 4 BASIC5.44□□□□□ -1.54
MSX2P35548 AP001085.1-201ENST00000524441 639 ntTSL 2 BASIC5.44□□□□□ -1.54
MSX2P35548 AC103843.1-201ENST00000527318 682 ntTSL 4 BASIC5.44□□□□□ -1.54
MSX2P35548 LDAH-211ENST00000541941 3807 ntTSL 2 BASIC5.44□□□□□ -1.54
MSX2P35548 PCED1B-AS1-203ENST00000547626 420 ntTSL 2 BASIC5.44□□□□□ -1.54
MSX2P35548 AC010196.1-201ENST00000550014 450 ntTSL 5 BASIC5.44□□□□□ -1.54
MSX2P35548 EEF1B2P4-201ENST00000551398 348 ntBASIC5.44□□□□□ -1.54
MSX2P35548 AC004825.1-201ENST00000555068 586 ntBASIC5.44□□□□□ -1.54
MSX2P35548 AC007496.1-201ENST00000565641 739 ntTSL 3 BASIC5.44□□□□□ -1.54
MSX2P35548 DSG1-AS1-202ENST00000578477 588 ntTSL 3 BASIC5.44□□□□□ -1.54
MSX2P35548 AC116003.2-201ENST00000579278 748 ntTSL 2 BASIC5.44□□□□□ -1.54
MSX2P35548 AC091132.1-201ENST00000588189 547 ntTSL 5 BASIC5.44□□□□□ -1.54
MSX2P35548 SLC25A36P1-201ENST00000590111 465 ntBASIC5.44□□□□□ -1.54
MSX2P35548 Z98949.1-207ENST00000609157 814 ntTSL 5 BASIC5.44□□□□□ -1.54
MSX2P35548 AC010632.3-201ENST00000611377 369 ntBASIC5.44□□□□□ -1.54
MSX2P35548 Six3os1_2.1-201ENST00000616963 217 ntBASIC5.44□□□□□ -1.54
MSX2P35548 SEC23A-215ENST00000625395 261 ntTSL 5 BASIC5.44□□□□□ -1.54
MSX2P35548 MIR325HG-202ENST00000626832 598 ntTSL 4 BASIC5.44□□□□□ -1.54
MSX2P35548 CLUHP10-201ENST00000631979 980 ntBASIC5.44□□□□□ -1.54
MSX2P35548 AC116618.1-201ENST00000634617 774 ntBASIC5.44□□□□□ -1.54
MSX2P35548 AC099654.12-201ENST00000639868 649 ntBASIC5.44□□□□□ -1.54
MSX2P35548 RABL3-201ENST00000273375 3883 ntAPPRIS P1 TSL 1 (best) BASIC5.44□□□□□ -1.54
MSX2P35548 MYBPC1-209ENST00000547509 3749 ntAPPRIS ALT2 TSL 5 BASIC5.44□□□□□ -1.54
MSX2P35548 FBXO38-218ENST00000513826 3585 ntTSL 1 (best) BASIC5.44□□□□□ -1.54
MSX2P35548 WDPCP-203ENST00000409120 5408 ntTSL 1 (best) BASIC5.44□□□□□ -1.54
MSX2P35548 WDPCP-202ENST00000398544 2063 ntAPPRIS ALT2 TSL 1 (best) BASIC5.44□□□□□ -1.54
MSX2P35548 BRAFP1-201ENST00000445336 2703 ntBASIC5.44□□□□□ -1.54
MSX2P35548 WAC-209ENST00000428935 1320 ntTSL 2 BASIC5.44□□□□□ -1.54
MSX2P35548 ECHDC1-222ENST00000531967 2585 ntAPPRIS ALT2 TSL 2 BASIC5.44□□□□□ -1.54
MSX2P35548 MYBPC1-205ENST00000536007 3512 ntAPPRIS ALT2 TSL 1 (best) BASIC5.44□□□□□ -1.54
MSX2P35548 MYBPC1-206ENST00000541119 3533 ntAPPRIS ALT2 TSL 1 (best) BASIC5.44□□□□□ -1.54
MSX2P35548 OR5AN1-203ENST00000641998 7647 ntAPPRIS P1 BASIC5.44□□□□□ -1.54
MSX2P35548 SEMA5A-AS1-201ENST00000510879 1679 ntTSL 2 BASIC5.43□□□□□ -1.54
MSX2P35548 VPS35P1-201ENST00000563400 1518 ntBASIC5.43□□□□□ -1.54
MSX2P35548 FKBP7-204ENST00000424785 2834 ntAPPRIS P3 TSL 1 (best) BASIC5.43□□□□□ -1.54
MSX2P35548 AC006145.1-201ENST00000439234 2651 ntTSL 2 BASIC5.43□□□□□ -1.54
MSX2P35548 LMO3-209ENST00000447609 3365 ntAPPRIS P1 TSL 1 (best) BASIC5.43□□□□□ -1.54
MSX2P35548 AC006206.1-201ENST00000544842 3387 ntBASIC5.43□□□□□ -1.54
MSX2P35548 ZNF480-204ENST00000490272 2238 ntTSL 2 BASIC5.43□□□□□ -1.54
MSX2P35548 NRG3-208ENST00000556918 1581 ntAPPRIS ALT2 TSL 1 (best) BASIC5.43□□□□□ -1.54
MSX2P35548 METTL21EP-201ENST00000298105 713 ntBASIC5.43□□□□□ -1.54
MSX2P35548 RNASE2-201ENST00000304625 755 ntAPPRIS P1 TSL 1 (best) BASIC5.43□□□□□ -1.54
MSX2P35548 OR1D2-201ENST00000331459 939 ntAPPRIS P1 BASIC5.43□□□□□ -1.54
MSX2P35548 RNASE9-201ENST00000338904 1049 ntAPPRIS P3 TSL 1 (best) BASIC5.43□□□□□ -1.54
MSX2P35548 RPS27AP11-201ENST00000402798 447 ntBASIC5.43□□□□□ -1.54
MSX2P35548 AL136131.1-201ENST00000406079 803 ntBASIC5.43□□□□□ -1.54
MSX2P35548 RPS3AP24-201ENST00000407896 734 ntBASIC5.43□□□□□ -1.54
MSX2P35548 RN7SKP146-201ENST00000410242 334 ntBASIC5.43□□□□□ -1.54
MSX2P35548 GAS5-202ENST00000414075 413 ntTSL 2 BASIC5.43□□□□□ -1.54
MSX2P35548 AP000221.1-201ENST00000419694 1046 ntTSL 3 BASIC5.43□□□□□ -1.54
MSX2P35548 LINC01058-201ENST00000420694 448 ntTSL 5 BASIC5.43□□□□□ -1.54
MSX2P35548 AC093843.1-201ENST00000424395 512 ntTSL 2 BASIC5.43□□□□□ -1.54
MSX2P35548 F10-AS1-201ENST00000424635 417 ntTSL 5 BASIC5.43□□□□□ -1.54
MSX2P35548 HSPE1P16-201ENST00000426640 348 ntBASIC5.43□□□□□ -1.54
MSX2P35548 AC018832.1-201ENST00000428171 566 ntTSL 4 BASIC5.43□□□□□ -1.54
MSX2P35548 ARL6IP1P2-201ENST00000431356 563 ntBASIC5.43□□□□□ -1.54
MSX2P35548 FTLP19-201ENST00000433300 394 ntBASIC5.43□□□□□ -1.54
MSX2P35548 AC005019.2-201ENST00000434321 359 ntTSL 5 BASIC5.43□□□□□ -1.54
MSX2P35548 NDUFB4P8-201ENST00000435351 367 ntBASIC5.43□□□□□ -1.54
MSX2P35548 AC234064.1-201ENST00000436312 247 ntBASIC5.43□□□□□ -1.54
MSX2P35548 GAPDHP48-201ENST00000436626 961 ntBASIC5.43□□□□□ -1.54
MSX2P35548 AL138899.2-201ENST00000439139 499 ntBASIC5.43□□□□□ -1.54
MSX2P35548 CYP3A5-203ENST00000439761 1075 ntTSL 2 BASIC5.43□□□□□ -1.54
MSX2P35548 AC005002.1-201ENST00000447458 540 ntBASIC5.43□□□□□ -1.54
MSX2P35548 MEMO1P4-201ENST00000453590 386 ntBASIC5.43□□□□□ -1.54
MSX2P35548 SNRPGP9-201ENST00000456025 225 ntBASIC5.43□□□□□ -1.54
MSX2P35548 PSMC1P13-201ENST00000458195 985 ntBASIC5.43□□□□□ -1.54
MSX2P35548 RN7SL269P-201ENST00000467795 305 ntBASIC5.43□□□□□ -1.54
MSX2P35548 AC116337.2-201ENST00000477662 156 ntBASIC5.43□□□□□ -1.54
MSX2P35548 AL117692.1-201ENST00000494283 713 ntBASIC5.43□□□□□ -1.54
MSX2P35548 AC109445.1-201ENST00000512356 383 ntBASIC5.43□□□□□ -1.54
MSX2P35548 LINC01484-201ENST00000517733 555 ntTSL 4 BASIC5.43□□□□□ -1.54
MSX2P35548 AC009884.1-201ENST00000522670 545 ntTSL 4 BASIC5.43□□□□□ -1.54
MSX2P35548 SMARCE1P4-201ENST00000523647 241 ntBASIC5.43□□□□□ -1.54
MSX2P35548 AP003733.3-201ENST00000524942 788 ntTSL 2 BASIC5.43□□□□□ -1.54
MSX2P35548 MITF-217ENST00000531774 1074 ntTSL 1 (best) BASIC5.43□□□□□ -1.54
MSX2P35548 AC011092.2-201ENST00000533659 586 ntTSL 1 (best) BASIC5.43□□□□□ -1.54
MSX2P35548 AC022511.1-201ENST00000544089 476 ntTSL 2 BASIC5.43□□□□□ -1.54
MSX2P35548 OR6C7P-201ENST00000547875 934 ntBASIC5.43□□□□□ -1.54
MSX2P35548 AC084757.1-201ENST00000559987 490 ntBASIC5.43□□□□□ -1.54
MSX2P35548 AC092325.1-201ENST00000566449 554 ntBASIC5.43□□□□□ -1.54
MSX2P35548 AC007342.5-201ENST00000571340 2142 ntBASIC5.43□□□□□ -1.54
MSX2P35548 AC074237.1-201ENST00000577674 471 ntTSL 3 BASIC5.43□□□□□ -1.54
MSX2P35548 DLGAP1-AS4-201ENST00000582054 757 ntTSL 5 BASIC5.43□□□□□ -1.54
MSX2P35548 AC012417.1-201ENST00000582307 1039 ntBASIC5.43□□□□□ -1.54
MSX2P35548 AC009303.2-201ENST00000585381 1083 ntTSL 3 BASIC5.43□□□□□ -1.54
MSX2P35548 FBXW7-AS1-201ENST00000605147 372 ntTSL 1 (best) BASIC5.43□□□□□ -1.54
MSX2P35548 AC069545.1-201ENST00000605671 358 ntBASIC5.43□□□□□ -1.54
MSX2P35548 AL136981.2-201ENST00000617319 734 ntBASIC5.43□□□□□ -1.54
MSX2P35548 LINC01515-217ENST00000620859 694 ntTSL 5 BASIC5.43□□□□□ -1.54
MSX2P35548 FP236241.1-206ENST00000625005 987 ntTSL 5 BASIC5.43□□□□□ -1.54
Retrieved 100 of 98,524 protein–RNA pairs in 93.6 ms