Protein–RNA interactions for Protein: P31269

HOXA9, Homeobox protein Hox-A9, humanhuman

Predictions only

Length 272 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA9P31269 TEX35-202ENST00000367639 785 ntAPPRIS ALT2 TSL 1 (best) BASIC4.67□□□□□ -1.66
HOXA9P31269 TNFRSF17-202ENST00000396495 668 ntAPPRIS ALT2 TSL 1 (best) BASIC4.67□□□□□ -1.66
HOXA9P31269 AL022722.2-201ENST00000402519 180 ntBASIC4.67□□□□□ -1.66
HOXA9P31269 AL080315.1-201ENST00000406055 466 ntBASIC4.67□□□□□ -1.66
HOXA9P31269 PLCE1-AS2-201ENST00000419353 459 ntTSL 5 BASIC4.67□□□□□ -1.66
HOXA9P31269 RPL21P43-201ENST00000425440 472 ntBASIC4.67□□□□□ -1.66
HOXA9P31269 AL158073.1-201ENST00000426848 1104 ntBASIC4.67□□□□□ -1.66
HOXA9P31269 NFYAP1-201ENST00000431953 972 ntBASIC4.67□□□□□ -1.66
HOXA9P31269 HMGB3P10-201ENST00000434734 572 ntBASIC4.67□□□□□ -1.66
HOXA9P31269 AC114495.1-201ENST00000441274 436 ntBASIC4.67□□□□□ -1.66
HOXA9P31269 HSFY6P-201ENST00000445573 403 ntBASIC4.67□□□□□ -1.66
HOXA9P31269 AP000844.1-201ENST00000446631 577 ntTSL 3 BASIC4.67□□□□□ -1.66
HOXA9P31269 AC239367.2-201ENST00000447309 705 ntBASIC4.67□□□□□ -1.66
HOXA9P31269 AC000124.1-201ENST00000448311 957 ntTSL 2 BASIC4.67□□□□□ -1.66
HOXA9P31269 FPGT-203ENST00000467578 601 ntTSL 2 BASIC4.67□□□□□ -1.66
HOXA9P31269 AC092925.1-201ENST00000470739 493 ntTSL 3 BASIC4.67□□□□□ -1.66
HOXA9P31269 AC117430.1-201ENST00000474711 801 ntTSL 5 BASIC4.67□□□□□ -1.66
HOXA9P31269 AC020890.1-201ENST00000491837 504 ntBASIC4.67□□□□□ -1.66
HOXA9P31269 AK4P6-201ENST00000505168 528 ntBASIC4.67□□□□□ -1.66
HOXA9P31269 LINC02149-201ENST00000511443 558 ntTSL 1 (best) BASIC4.67□□□□□ -1.66
HOXA9P31269 AC026402.1-201ENST00000513642 170 ntBASIC4.67□□□□□ -1.66
HOXA9P31269 AC107373.1-201ENST00000522570 603 ntTSL 3 BASIC4.67□□□□□ -1.66
HOXA9P31269 AF117829.1-202ENST00000524166 836 ntTSL 3 BASIC4.67□□□□□ -1.66
HOXA9P31269 AP002370.2-203ENST00000533101 576 ntTSL 4 BASIC4.67□□□□□ -1.66
HOXA9P31269 TRAV8-5-201ENST00000537369 341 ntBASIC4.67□□□□□ -1.66
HOXA9P31269 AC090985.1-201ENST00000554440 480 ntTSL 2 BASIC4.67□□□□□ -1.66
HOXA9P31269 AL359237.1-202ENST00000556168 487 ntTSL 5 BASIC4.67□□□□□ -1.66
HOXA9P31269 MEG8-217ENST00000556637 924 ntTSL 5 BASIC4.67□□□□□ -1.66
HOXA9P31269 AC051619.4-201ENST00000560034 292 ntTSL 5 BASIC4.67□□□□□ -1.66
HOXA9P31269 AC067838.1-201ENST00000606064 577 ntBASIC4.67□□□□□ -1.66
HOXA9P31269 AC131238.1-201ENST00000617135 328 ntBASIC4.67□□□□□ -1.66
HOXA9P31269 LGALS13-204ENST00000621475 494 ntAPPRIS ALT2 TSL 5 BASIC4.67□□□□□ -1.66
HOXA9P31269 AL136084.2-203ENST00000630758 690 ntTSL 5 BASIC4.67□□□□□ -1.66
HOXA9P31269 AL139254.3-201ENST00000641097 674 ntBASIC4.67□□□□□ -1.66
HOXA9P31269 OR2L1P-202ENST00000641567 1023 ntBASIC4.67□□□□□ -1.66
HOXA9P31269 CDKL3-209ENST00000523054 1775 ntTSL 2 BASIC4.67□□□□□ -1.66
HOXA9P31269 AP002512.4-201ENST00000641310 4672 ntAPPRIS P1 BASIC4.67□□□□□ -1.66
HOXA9P31269 ELF2-203ENST00000379550 3278 ntTSL 5 BASIC4.66□□□□□ -1.66
HOXA9P31269 PPP1R9A-201ENST00000289495 3983 ntTSL 1 (best) BASIC4.66□□□□□ -1.66
HOXA9P31269 HGF-201ENST00000222390 5989 ntAPPRIS P3 TSL 1 (best) BASIC4.66□□□□□ -1.66
HOXA9P31269 LZTFL1-216ENST00000539217 4113 ntTSL 2 BASIC4.66□□□□□ -1.66
HOXA9P31269 CLSPN-203ENST00000373220 3977 ntAPPRIS ALT2 TSL 1 (best) BASIC4.66□□□□□ -1.66
HOXA9P31269 C2orf76-201ENST00000334816 676 ntAPPRIS P1 TSL 1 (best) BASIC4.66□□□□□ -1.66
HOXA9P31269 RNU1-94P-201ENST00000362627 173 ntBASIC4.66□□□□□ -1.66
HOXA9P31269 RNU1-13P-201ENST00000384499 162 ntBASIC4.66□□□□□ -1.66
HOXA9P31269 ESCO2-202ENST00000397418 720 ntTSL 5 BASIC4.66□□□□□ -1.66
HOXA9P31269 FCF1P5-201ENST00000406490 482 ntBASIC4.66□□□□□ -1.66
HOXA9P31269 AL035696.2-201ENST00000407941 709 ntBASIC4.66□□□□□ -1.66
HOXA9P31269 RNA5SP317-201ENST00000410176 116 ntBASIC4.66□□□□□ -1.66
HOXA9P31269 RNA5SP311-201ENST00000411290 116 ntBASIC4.66□□□□□ -1.66
HOXA9P31269 AC073136.2-201ENST00000417282 849 ntBASIC4.66□□□□□ -1.66
HOXA9P31269 EIF4A1P1-201ENST00000420241 934 ntBASIC4.66□□□□□ -1.66
HOXA9P31269 TTTY21B-201ENST00000421353 307 ntTSL 1 (best) BASIC4.66□□□□□ -1.66
HOXA9P31269 TTTY21-201ENST00000430228 307 ntTSL 1 (best) BASIC4.66□□□□□ -1.66
HOXA9P31269 AC241644.1-201ENST00000431525 446 ntTSL 3 BASIC4.66□□□□□ -1.66
HOXA9P31269 SNAP25-AS1-205ENST00000453544 368 ntTSL 5 BASIC4.66□□□□□ -1.66
HOXA9P31269 LINC01150-201ENST00000455671 315 ntTSL 1 (best) BASIC4.66□□□□□ -1.66
HOXA9P31269 RPS7P7-201ENST00000463499 571 ntBASIC4.66□□□□□ -1.66
HOXA9P31269 AC112206.1-201ENST00000468416 477 ntBASIC4.66□□□□□ -1.66
HOXA9P31269 RPL35P6-201ENST00000490024 372 ntBASIC4.66□□□□□ -1.66
HOXA9P31269 AC108475.1-201ENST00000507880 950 ntBASIC4.66□□□□□ -1.66
HOXA9P31269 RNA5SP497-201ENST00000516081 97 ntBASIC4.66□□□□□ -1.66
HOXA9P31269 RNA5SP315-201ENST00000516340 116 ntBASIC4.66□□□□□ -1.66
HOXA9P31269 RNU6-943P-201ENST00000516960 98 ntBASIC4.66□□□□□ -1.66
HOXA9P31269 RNA5SP312-201ENST00000517068 116 ntBASIC4.66□□□□□ -1.66
HOXA9P31269 AF186190.1-201ENST00000517470 480 ntBASIC4.66□□□□□ -1.66
HOXA9P31269 AP001804.2-201ENST00000533932 910 ntBASIC4.66□□□□□ -1.66
HOXA9P31269 AC015912.2-201ENST00000571053 181 ntBASIC4.66□□□□□ -1.66
HOXA9P31269 AC002094.2-201ENST00000577850 1121 ntTSL 5 BASIC4.66□□□□□ -1.66
HOXA9P31269 SNORD39.2-201ENST00000579995 76 ntBASIC4.66□□□□□ -1.66
HOXA9P31269 RN7SL176P-201ENST00000580352 264 ntBASIC4.66□□□□□ -1.66
HOXA9P31269 AC133552.5-201ENST00000604266 540 ntBASIC4.66□□□□□ -1.66
HOXA9P31269 AC023813.4-201ENST00000607580 580 ntBASIC4.66□□□□□ -1.66
HOXA9P31269 AP000569.1-201ENST00000607953 591 ntTSL 2 BASIC4.66□□□□□ -1.66
HOXA9P31269 AL137078.2-201ENST00000615740 318 ntTSL 5 BASIC4.66□□□□□ -1.66
HOXA9P31269 AC005911.1-201ENST00000619883 456 ntTSL 5 BASIC4.66□□□□□ -1.66
HOXA9P31269 MIR8059-201ENST00000620427 81 ntBASIC4.66□□□□□ -1.66
HOXA9P31269 RNA5SP196-201ENST00000625967 102 ntBASIC4.66□□□□□ -1.66
HOXA9P31269 F13B-201ENST00000367412 2217 ntAPPRIS P1 TSL 1 (best) BASIC4.66□□□□□ -1.66
HOXA9P31269 C12orf60-201ENST00000330828 1684 ntAPPRIS P1 TSL 1 (best) BASIC4.66□□□□□ -1.66
HOXA9P31269 ERGIC2-201ENST00000360150 5014 ntAPPRIS P1 TSL 1 (best) BASIC4.66□□□□□ -1.66
HOXA9P31269 U2SURP-208ENST00000473835 7276 ntAPPRIS P1 TSL 1 (best) BASIC4.66□□□□□ -1.66
HOXA9P31269 FTO-203ENST00000460382 1517 ntTSL 5 BASIC4.66□□□□□ -1.66
HOXA9P31269 OR2L13-201ENST00000358120 1942 ntAPPRIS P1 BASIC4.66□□□□□ -1.66
HOXA9P31269 ARHGEF12-202ENST00000397843 9660 ntAPPRIS P1 TSL 1 (best) BASIC4.66□□□□□ -1.66
HOXA9P31269 ZNF382-204ENST00000439428 2742 ntAPPRIS ALT2 TSL 1 (best) BASIC4.66□□□□□ -1.66
HOXA9P31269 MTCO1P22-201ENST00000604619 1360 ntBASIC4.65□□□□□ -1.66
HOXA9P31269 AL355852.1-201ENST00000454081 1771 ntBASIC4.65□□□□□ -1.66
HOXA9P31269 AC092821.1-201ENST00000640129 4180 ntAPPRIS P1 TSL 5 BASIC4.65□□□□□ -1.66
HOXA9P31269 OR1A1-202ENST00000641322 3743 ntAPPRIS P1 BASIC4.65□□□□□ -1.66
HOXA9P31269 ESCO1-204ENST00000622333 1850 ntTSL 2 BASIC4.65□□□□□ -1.66
HOXA9P31269 MAPK10-206ENST00000395161 4186 ntTSL 5 BASIC4.65□□□□□ -1.66
HOXA9P31269 ZFX-203ENST00000379177 7558 ntAPPRIS P1 TSL 1 (best) BASIC4.65□□□□□ -1.66
HOXA9P31269 AC010186.3-201ENST00000537616 2508 ntTSL 1 (best) BASIC4.65□□□□□ -1.66
HOXA9P31269 AC107068.1-201ENST00000563286 4218 ntBASIC4.65□□□□□ -1.66
HOXA9P31269 C1orf100-201ENST00000308105 579 ntAPPRIS P1 TSL 2 BASIC4.65□□□□□ -1.67
HOXA9P31269 OR56B2P-201ENST00000317102 954 ntBASIC4.65□□□□□ -1.67
HOXA9P31269 RNU1-64P-201ENST00000365443 163 ntBASIC4.65□□□□□ -1.67
HOXA9P31269 AL445189.1-201ENST00000405722 338 ntBASIC4.65□□□□□ -1.67
HOXA9P31269 RCC2P2-201ENST00000422174 918 ntBASIC4.65□□□□□ -1.67
Retrieved 100 of 98,524 protein–RNA pairs in 73.2 ms