Protein–RNA interactions for Protein: P09017

HOXC4, Homeobox protein Hox-C4, humanhuman

Predicted RBP Predictions only

Length 264 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC4P09017 TAOK3-202ENST00000419821 4301 ntAPPRIS P1 TSL 1 (best) BASIC4.37□□□□□ -1.71
HOXC4P09017 OR13C3-201ENST00000374781 1108 ntBASIC4.37□□□□□ -1.71
HOXC4P09017 SIRPD-201ENST00000381621 823 ntAPPRIS ALT2 TSL 3 BASIC4.37□□□□□ -1.71
HOXC4P09017 SNORA68.2-201ENST00000391263 128 ntBASIC4.37□□□□□ -1.71
HOXC4P09017 OR6C69P-201ENST00000394268 893 ntBASIC4.37□□□□□ -1.71
HOXC4P09017 AC011933.1-201ENST00000413334 321 ntBASIC4.37□□□□□ -1.71
HOXC4P09017 RAB9AP4-201ENST00000415230 609 ntBASIC4.37□□□□□ -1.71
HOXC4P09017 AL139095.3-201ENST00000419672 1203 ntBASIC4.37□□□□□ -1.71
HOXC4P09017 AL020993.1-201ENST00000420172 297 ntTSL 3 BASIC4.37□□□□□ -1.71
HOXC4P09017 MTCO1P51-201ENST00000427672 1060 ntBASIC4.37□□□□□ -1.71
HOXC4P09017 ACTR3P2-201ENST00000439585 1257 ntBASIC4.37□□□□□ -1.71
HOXC4P09017 AL358176.1-201ENST00000457477 357 ntTSL 5 BASIC4.37□□□□□ -1.71
HOXC4P09017 MTND6P32-201ENST00000457611 483 ntBASIC4.37□□□□□ -1.71
HOXC4P09017 AC073636.1-202ENST00000457756 558 ntTSL 4 BASIC4.37□□□□□ -1.71
HOXC4P09017 AC116533.1-201ENST00000459748 321 ntBASIC4.37□□□□□ -1.71
HOXC4P09017 PPIAP21-201ENST00000464473 501 ntBASIC4.37□□□□□ -1.71
HOXC4P09017 RPL7AP28-201ENST00000464513 571 ntBASIC4.37□□□□□ -1.71
HOXC4P09017 AC010618.1-201ENST00000469924 477 ntBASIC4.37□□□□□ -1.71
HOXC4P09017 AC068756.1-201ENST00000482003 403 ntTSL 2 BASIC4.37□□□□□ -1.71
HOXC4P09017 AC113382.2-201ENST00000506911 646 ntTSL 3 BASIC4.37□□□□□ -1.71
HOXC4P09017 NPM1P52-201ENST00000518264 846 ntBASIC4.37□□□□□ -1.71
HOXC4P09017 MEG8-217ENST00000556637 924 ntTSL 5 BASIC4.37□□□□□ -1.71
HOXC4P09017 APOOP5-203ENST00000565921 410 ntTSL 3 BASIC4.37□□□□□ -1.71
HOXC4P09017 AC021483.2-201ENST00000567415 758 ntBASIC4.37□□□□□ -1.71
HOXC4P09017 SNORD39.2-201ENST00000579995 76 ntBASIC4.37□□□□□ -1.71
HOXC4P09017 RPL7P50-201ENST00000600588 727 ntBASIC4.37□□□□□ -1.71
HOXC4P09017 AC010422.4-201ENST00000601420 533 ntTSL 3 BASIC4.37□□□□□ -1.71
HOXC4P09017 AC090181.2-201ENST00000602975 672 ntBASIC4.37□□□□□ -1.71
HOXC4P09017 5_8S_rRNA.1-201ENST00000614365 152 ntBASIC4.37□□□□□ -1.71
HOXC4P09017 AC114781.5-201ENST00000615297 108 ntBASIC4.37□□□□□ -1.71
HOXC4P09017 CDKN2B-AS_3.1-201ENST00000617587 144 ntBASIC4.37□□□□□ -1.71
HOXC4P09017 LINC02246-204ENST00000625278 740 ntTSL 5 BASIC4.37□□□□□ -1.71
HOXC4P09017 CFTRP2-201ENST00000634304 199 ntBASIC4.37□□□□□ -1.71
HOXC4P09017 OR13C3-202ENST00000641090 1108 ntAPPRIS P1 BASIC4.37□□□□□ -1.71
HOXC4P09017 DYNAP-201ENST00000321600 2027 ntAPPRIS P3 TSL 2 BASIC4.37□□□□□ -1.71
HOXC4P09017 DDX18P3-201ENST00000404856 2007 ntBASIC4.37□□□□□ -1.71
HOXC4P09017 AC079915.1-201ENST00000584382 2780 ntTSL 2 BASIC4.37□□□□□ -1.71
HOXC4P09017 CYLD-212ENST00000568704 3292 ntTSL 5 BASIC4.37□□□□□ -1.71
HOXC4P09017 MS4A14-208ENST00000531783 2910 ntAPPRIS ALT2 TSL 5 BASIC4.37□□□□□ -1.71
HOXC4P09017 TRIM77-201ENST00000398290 1353 ntAPPRIS P1 TSL 5 BASIC4.37□□□□□ -1.71
HOXC4P09017 AL133268.1-201ENST00000405676 1401 ntBASIC4.37□□□□□ -1.71
HOXC4P09017 SCN1A-210ENST00000635776 10107 ntTSL 5 BASIC4.37□□□□□ -1.71
HOXC4P09017 AC093775.1-201ENST00000624154 1868 ntBASIC4.37□□□□□ -1.71
HOXC4P09017 FOXP2-220ENST00000634411 4065 ntTSL 5 BASIC4.36□□□□□ -1.71
HOXC4P09017 C6-201ENST00000263413 3661 ntAPPRIS P1 TSL 1 (best) BASIC4.36□□□□□ -1.71
HOXC4P09017 LMNTD1-202ENST00000413632 1520 ntTSL 1 (best) BASIC4.36□□□□□ -1.71
HOXC4P09017 NXPH1-205ENST00000602349 1953 ntBASIC4.36□□□□□ -1.71
HOXC4P09017 ZNF638-203ENST00000409544 6821 ntAPPRIS P1 TSL 1 (best) BASIC4.36□□□□□ -1.71
HOXC4P09017 VIP-201ENST00000367243 1581 ntAPPRIS ALT1 TSL 1 (best) BASIC4.36□□□□□ -1.71
HOXC4P09017 SPAG5-AS1-202ENST00000424210 1551 ntTSL 2 BASIC4.36□□□□□ -1.71
HOXC4P09017 FAM135A-210ENST00000505868 5173 ntTSL 5 BASIC4.36□□□□□ -1.71
HOXC4P09017 ATP2C1-205ENST00000504381 3498 ntTSL 2 BASIC4.36□□□□□ -1.71
HOXC4P09017 KCNJ6-201ENST00000609713 19645 ntAPPRIS P1 TSL 1 (best) BASIC4.36□□□□□ -1.71
HOXC4P09017 PTRH2-203ENST00000470557 4114 ntAPPRIS P3 BASIC4.36□□□□□ -1.71
HOXC4P09017 AP1G1-207ENST00000564155 2723 ntTSL 1 (best) BASIC4.36□□□□□ -1.71
HOXC4P09017 CTNNA3-203ENST00000433211 10675 ntAPPRIS P1 TSL 1 (best) BASIC4.36□□□□□ -1.71
HOXC4P09017 AC008033.1-201ENST00000216407 1162 ntBASIC4.36□□□□□ -1.71
HOXC4P09017 FAM3C2-201ENST00000312214 681 ntBASIC4.36□□□□□ -1.71
HOXC4P09017 RNA5SP366-201ENST00000365454 123 ntBASIC4.36□□□□□ -1.71
HOXC4P09017 PRIM2-202ENST00000370687 909 ntTSL 3 BASIC4.36□□□□□ -1.71
HOXC4P09017 CCL7-202ENST00000394627 696 ntTSL 3 BASIC4.36□□□□□ -1.71
HOXC4P09017 ATP5F1P2-201ENST00000398143 760 ntBASIC4.36□□□□□ -1.71
HOXC4P09017 AL121834.1-202ENST00000404494 277 ntBASIC4.36□□□□□ -1.71
HOXC4P09017 OTUD6B-202ENST00000404789 1089 ntTSL 1 (best) BASIC4.36□□□□□ -1.71
HOXC4P09017 SNORA74C-2-201ENST00000411179 201 ntBASIC4.36□□□□□ -1.71
HOXC4P09017 AC093158.1-201ENST00000415549 791 ntTSL 3 BASIC4.36□□□□□ -1.71
HOXC4P09017 AL139240.1-201ENST00000422963 505 ntTSL 2 BASIC4.36□□□□□ -1.71
HOXC4P09017 RPS12P5-201ENST00000423449 371 ntBASIC4.36□□□□□ -1.71
HOXC4P09017 RSL24D1P6-201ENST00000426934 401 ntBASIC4.36□□□□□ -1.71
HOXC4P09017 C4orf45-201ENST00000434826 1215 ntAPPRIS P1 TSL 2 BASIC4.36□□□□□ -1.71
HOXC4P09017 AC034228.3-201ENST00000446275 562 ntTSL 3 BASIC4.36□□□□□ -1.71
HOXC4P09017 CDKN3-205ENST00000458126 845 ntAPPRIS ALT2 TSL 5 BASIC4.36□□□□□ -1.71
HOXC4P09017 LINC01158-205ENST00000458253 747 ntTSL 5 BASIC4.36□□□□□ -1.71
HOXC4P09017 AL645608.2-201ENST00000458555 471 ntTSL 2 BASIC4.36□□□□□ -1.71
HOXC4P09017 RPS20P4-201ENST00000461659 355 ntBASIC4.36□□□□□ -1.71
HOXC4P09017 RPS27AP17-201ENST00000463344 455 ntBASIC4.36□□□□□ -1.71
HOXC4P09017 AC112206.1-201ENST00000468416 477 ntBASIC4.36□□□□□ -1.71
HOXC4P09017 AC109327.1-201ENST00000471666 403 ntBASIC4.36□□□□□ -1.71
HOXC4P09017 SEC22A-207ENST00000481965 673 ntTSL 3 BASIC4.36□□□□□ -1.71
HOXC4P09017 PLSCR5-202ENST00000482567 1018 ntTSL 1 (best) BASIC4.36□□□□□ -1.71
HOXC4P09017 AC083829.1-201ENST00000503756 657 ntBASIC4.36□□□□□ -1.71
HOXC4P09017 AC097478.1-202ENST00000508021 567 ntTSL 4 BASIC4.36□□□□□ -1.71
HOXC4P09017 PRELID3BP5-201ENST00000508612 460 ntBASIC4.36□□□□□ -1.71
HOXC4P09017 MYLK-AS2-202ENST00000515464 754 ntTSL 2 BASIC4.36□□□□□ -1.71
HOXC4P09017 SLIT2-IT1-201ENST00000515882 601 ntTSL 1 (best) BASIC4.36□□□□□ -1.71
HOXC4P09017 SPTY2D1-AS1-203ENST00000542172 331 ntAPPRIS ALT2 TSL 1 (best) BASIC4.36□□□□□ -1.71
HOXC4P09017 LINC02446-201ENST00000544591 868 ntTSL 2 BASIC4.36□□□□□ -1.71
HOXC4P09017 LINC00644-201ENST00000555156 295 ntTSL 2 BASIC4.36□□□□□ -1.71
HOXC4P09017 AL049875.1-202ENST00000556620 857 ntTSL 3 BASIC4.36□□□□□ -1.71
HOXC4P09017 AC122134.1-201ENST00000565664 1104 ntBASIC4.36□□□□□ -1.71
HOXC4P09017 LINC02565-201ENST00000592678 478 ntTSL 2 BASIC4.36□□□□□ -1.71
HOXC4P09017 AP002360.3-201ENST00000607673 710 ntBASIC4.36□□□□□ -1.71
HOXC4P09017 LRRC2-AS1-202ENST00000614743 633 ntTSL 3 BASIC4.36□□□□□ -1.71
HOXC4P09017 AC067931.1-201ENST00000624190 671 ntBASIC4.36□□□□□ -1.71
HOXC4P09017 AC140479.6-201ENST00000633535 357 ntBASIC4.36□□□□□ -1.71
HOXC4P09017 POU2F1-206ENST00000429375 13651 ntAPPRIS ALT2 TSL 2 BASIC4.36□□□□□ -1.71
HOXC4P09017 RIMS1-204ENST00000401910 3542 ntTSL 2 BASIC4.36□□□□□ -1.71
HOXC4P09017 OR2L13-201ENST00000358120 1942 ntAPPRIS P1 BASIC4.36□□□□□ -1.71
HOXC4P09017 ANO3-204ENST00000531568 3117 ntAPPRIS ALT2 TSL 2 BASIC4.36□□□□□ -1.71
HOXC4P09017 AC123767.1-201ENST00000519537 1439 ntTSL 5 BASIC4.36□□□□□ -1.71
Retrieved 100 of 98,524 protein–RNA pairs in 93.2 ms