Protein–RNA interactions for Protein: Q99801

NKX3-1, Homeobox protein Nkx-3.1, humanhuman

Predicted RBP Predictions only

Length 234 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-1Q99801 HMGB3P19-201ENST00000403971 560 ntBASIC4.28□□□□□ -1.72
NKX3-1Q99801 RN7SKP213-201ENST00000410746 298 ntBASIC4.28□□□□□ -1.72
NKX3-1Q99801 RN7SKP126-201ENST00000411143 300 ntBASIC4.28□□□□□ -1.72
NKX3-1Q99801 AL158837.1-201ENST00000417644 452 ntTSL 2 BASIC4.28□□□□□ -1.72
NKX3-1Q99801 AL591468.1-201ENST00000417932 573 ntTSL 3 BASIC4.28□□□□□ -1.72
NKX3-1Q99801 AC104389.1-201ENST00000418080 522 ntTSL 3 BASIC4.28□□□□□ -1.72
NKX3-1Q99801 AC244394.2-201ENST00000425109 735 ntTSL 5 BASIC4.28□□□□□ -1.72
NKX3-1Q99801 DEFB130D-201ENST00000426866 237 ntBASIC4.28□□□□□ -1.72
NKX3-1Q99801 AC068481.1-202ENST00000428379 555 ntTSL 4 BASIC4.28□□□□□ -1.72
NKX3-1Q99801 ELOCP6-201ENST00000429066 328 ntBASIC4.28□□□□□ -1.72
NKX3-1Q99801 AL358972.1-201ENST00000434356 466 ntTSL 2 BASIC4.28□□□□□ -1.72
NKX3-1Q99801 RPL34P20-201ENST00000442771 351 ntBASIC4.28□□□□□ -1.72
NKX3-1Q99801 AC009487.1-201ENST00000444164 403 ntTSL 3 BASIC4.28□□□□□ -1.72
NKX3-1Q99801 EEF1B2P5-201ENST00000444820 548 ntBASIC4.28□□□□□ -1.72
NKX3-1Q99801 RPL34P26-201ENST00000445636 354 ntBASIC4.28□□□□□ -1.72
NKX3-1Q99801 AL035551.1-201ENST00000446931 348 ntBASIC4.28□□□□□ -1.72
NKX3-1Q99801 IGHV5-78-201ENST00000450948 295 ntBASIC4.28□□□□□ -1.72
NKX3-1Q99801 AL133244.1-201ENST00000456007 258 ntBASIC4.28□□□□□ -1.72
NKX3-1Q99801 LINC01473-203ENST00000456653 1079 ntTSL 3 BASIC4.28□□□□□ -1.72
NKX3-1Q99801 ELOCP12-201ENST00000458706 328 ntBASIC4.28□□□□□ -1.72
NKX3-1Q99801 RPL7P48-201ENST00000461513 746 ntBASIC4.28□□□□□ -1.72
NKX3-1Q99801 AC018635.1-201ENST00000468292 1030 ntBASIC4.28□□□□□ -1.72
NKX3-1Q99801 AL035454.1-201ENST00000470758 433 ntTSL 3 BASIC4.28□□□□□ -1.72
NKX3-1Q99801 AC018816.1-205ENST00000489771 509 ntTSL 2 BASIC4.28□□□□□ -1.72
NKX3-1Q99801 AC020900.1-201ENST00000502568 565 ntTSL 4 BASIC4.28□□□□□ -1.72
NKX3-1Q99801 SUMO2P5-201ENST00000506790 245 ntBASIC4.28□□□□□ -1.72
NKX3-1Q99801 AC097515.1-202ENST00000511818 371 ntTSL 3 BASIC4.28□□□□□ -1.72
NKX3-1Q99801 AC104827.1-202ENST00000511917 1049 ntTSL 1 (best) BASIC4.28□□□□□ -1.72
NKX3-1Q99801 ENPP7P9-201ENST00000514456 627 ntBASIC4.28□□□□□ -1.72
NKX3-1Q99801 GPX8-208ENST00000515370 1036 ntTSL 2 BASIC4.28□□□□□ -1.72
NKX3-1Q99801 AC027701.1-201ENST00000520155 823 ntTSL 3 BASIC4.28□□□□□ -1.72
NKX3-1Q99801 RPL23AP53-201ENST00000521854 457 ntBASIC4.28□□□□□ -1.72
NKX3-1Q99801 AC131254.2-201ENST00000521908 550 ntTSL 3 BASIC4.28□□□□□ -1.72
NKX3-1Q99801 AC073023.1-201ENST00000522896 773 ntTSL 5 BASIC4.28□□□□□ -1.72
NKX3-1Q99801 LINC01489-201ENST00000542689 605 ntTSL 5 BASIC4.28□□□□□ -1.72
NKX3-1Q99801 PRR4-212ENST00000544994 326 ntAPPRIS ALT2 TSL 1 (best) BASIC4.28□□□□□ -1.72
NKX3-1Q99801 NR1H4-204ENST00000546380 565 ntTSL 3 BASIC4.28□□□□□ -1.72
NKX3-1Q99801 AC008083.2-201ENST00000546707 476 ntBASIC4.28□□□□□ -1.72
NKX3-1Q99801 AL445363.1-202ENST00000553697 545 ntTSL 3 BASIC4.28□□□□□ -1.72
NKX3-1Q99801 AC124283.4-201ENST00000581815 456 ntBASIC4.28□□□□□ -1.72
NKX3-1Q99801 AC091057.3-201ENST00000602684 733 ntBASIC4.28□□□□□ -1.72
NKX3-1Q99801 AC018618.2-201ENST00000604770 446 ntBASIC4.28□□□□□ -1.72
NKX3-1Q99801 TAS2R6P-201ENST00000605022 826 ntBASIC4.28□□□□□ -1.72
NKX3-1Q99801 AC011374.2-201ENST00000607135 526 ntBASIC4.28□□□□□ -1.72
NKX3-1Q99801 AC124016.2-201ENST00000610058 665 ntBASIC4.28□□□□□ -1.72
NKX3-1Q99801 AC245452.5-201ENST00000620649 780 ntTSL 3 BASIC4.28□□□□□ -1.72
NKX3-1Q99801 AC018445.2-201ENST00000622987 260 ntBASIC4.28□□□□□ -1.72
NKX3-1Q99801 AC093875.1-201ENST00000623688 504 ntBASIC4.28□□□□□ -1.72
NKX3-1Q99801 EDIL3-202ENST00000380138 4244 ntTSL 1 (best) BASIC4.28□□□□□ -1.72
NKX3-1Q99801 PARP11-201ENST00000228820 4424 ntAPPRIS P1 TSL 1 (best) BASIC4.28□□□□□ -1.72
NKX3-1Q99801 PARP11-203ENST00000427057 4406 ntTSL 1 (best) BASIC4.28□□□□□ -1.72
NKX3-1Q99801 TRIM69-201ENST00000329464 1901 ntAPPRIS P1 TSL 1 (best) BASIC4.28□□□□□ -1.72
NKX3-1Q99801 MTUS1-202ENST00000297488 3731 ntAPPRIS ALT1 TSL 1 (best) BASIC4.28□□□□□ -1.72
NKX3-1Q99801 CTNNA3-203ENST00000433211 10675 ntAPPRIS P1 TSL 1 (best) BASIC4.28□□□□□ -1.72
NKX3-1Q99801 ZNF765-201ENST00000396408 4569 ntAPPRIS P1 TSL 1 (best) BASIC4.28□□□□□ -1.72
NKX3-1Q99801 HIPK3-204ENST00000525975 3668 ntAPPRIS P1 TSL 1 (best) BASIC4.28□□□□□ -1.72
NKX3-1Q99801 PPP2R2A-201ENST00000315985 1878 ntAPPRIS ALT1 TSL 2 BASIC4.28□□□□□ -1.72
NKX3-1Q99801 PUS7L-203ENST00000431332 1873 ntTSL 2 BASIC4.28□□□□□ -1.72
NKX3-1Q99801 AL354733.2-209ENST00000589233 1434 ntTSL 2 BASIC4.28□□□□□ -1.72
NKX3-1Q99801 CPXCR1-201ENST00000276127 1630 ntAPPRIS P1 TSL 1 (best) BASIC4.28□□□□□ -1.72
NKX3-1Q99801 ECM2-202ENST00000375540 1606 ntTSL 2 BASIC4.28□□□□□ -1.72
NKX3-1Q99801 ROBO2-213ENST00000614793 7662 ntTSL 5 BASIC4.28□□□□□ -1.72
NKX3-1Q99801 SCRG1-201ENST00000296506 4420 ntAPPRIS P1 TSL 1 (best) BASIC4.28□□□□□ -1.72
NKX3-1Q99801 CHD9-221ENST00000615216 10603 ntTSL 5 BASIC4.28□□□□□ -1.72
NKX3-1Q99801 F13B-201ENST00000367412 2217 ntAPPRIS P1 TSL 1 (best) BASIC4.27□□□□□ -1.73
NKX3-1Q99801 PREPL-205ENST00000409411 4725 ntTSL 1 (best) BASIC4.27□□□□□ -1.73
NKX3-1Q99801 AC007996.1-201ENST00000620414 2821 ntBASIC4.27□□□□□ -1.73
NKX3-1Q99801 ASB5-201ENST00000296525 3031 ntAPPRIS P1 TSL 1 (best) BASIC4.27□□□□□ -1.73
NKX3-1Q99801 UGT2A3-201ENST00000251566 2965 ntAPPRIS P1 TSL 1 (best) BASIC4.27□□□□□ -1.73
NKX3-1Q99801 RPS6KA6-204ENST00000620340 8169 ntTSL 5 BASIC4.27□□□□□ -1.73
NKX3-1Q99801 LRRC53-201ENST00000294635 3859 ntAPPRIS P1 TSL 5 BASIC4.27□□□□□ -1.73
NKX3-1Q99801 HMBOX1-202ENST00000355231 1694 ntTSL 5 BASIC4.27□□□□□ -1.73
NKX3-1Q99801 NCOA1-201ENST00000288599 6952 ntAPPRIS ALT2 TSL 1 (best) BASIC4.27□□□□□ -1.73
NKX3-1Q99801 SNORA73.1-201ENST00000363107 205 ntBASIC4.27□□□□□ -1.73
NKX3-1Q99801 RN7SKP113-201ENST00000363891 295 ntBASIC4.27□□□□□ -1.73
NKX3-1Q99801 PIGP-204ENST00000399102 688 ntAPPRIS P1 TSL 1 (best) BASIC4.27□□□□□ -1.73
NKX3-1Q99801 HMGB1P13-201ENST00000406019 642 ntBASIC4.27□□□□□ -1.73
NKX3-1Q99801 AL355615.1-201ENST00000406187 641 ntBASIC4.27□□□□□ -1.73
NKX3-1Q99801 DUTP5-201ENST00000406790 469 ntBASIC4.27□□□□□ -1.73
NKX3-1Q99801 MIR1271-201ENST00000408537 86 ntBASIC4.27□□□□□ -1.73
NKX3-1Q99801 AL020994.2-201ENST00000413244 571 ntTSL 4 BASIC4.27□□□□□ -1.73
NKX3-1Q99801 AL358176.3-201ENST00000420757 454 ntBASIC4.27□□□□□ -1.73
NKX3-1Q99801 AC012519.1-201ENST00000424588 610 ntBASIC4.27□□□□□ -1.73
NKX3-1Q99801 ITGA9-AS1-203ENST00000429532 702 ntTSL 5 BASIC4.27□□□□□ -1.73
NKX3-1Q99801 OR52B5P-201ENST00000435337 951 ntBASIC4.27□□□□□ -1.73
NKX3-1Q99801 RHOT1P3-201ENST00000436571 331 ntBASIC4.27□□□□□ -1.73
NKX3-1Q99801 MED6P1-201ENST00000439659 713 ntBASIC4.27□□□□□ -1.73
NKX3-1Q99801 RPL7P33-201ENST00000444159 742 ntBASIC4.27□□□□□ -1.73
NKX3-1Q99801 AC097499.1-201ENST00000444277 208 ntBASIC4.27□□□□□ -1.73
NKX3-1Q99801 AL137005.1-201ENST00000452944 719 ntTSL 5 BASIC4.27□□□□□ -1.73
NKX3-1Q99801 AC092647.2-201ENST00000452998 253 ntBASIC4.27□□□□□ -1.73
NKX3-1Q99801 GYG1P1-201ENST00000460864 698 ntBASIC4.27□□□□□ -1.73
NKX3-1Q99801 AC096741.1-201ENST00000472250 846 ntBASIC4.27□□□□□ -1.73
NKX3-1Q99801 AC073073.1-201ENST00000493920 463 ntBASIC4.27□□□□□ -1.73
NKX3-1Q99801 EEF1A1P25-201ENST00000495704 1267 ntBASIC4.27□□□□□ -1.73
NKX3-1Q99801 PRELID3BP6-201ENST00000503839 571 ntBASIC4.27□□□□□ -1.73
NKX3-1Q99801 TPT1P8-201ENST00000510120 555 ntBASIC4.27□□□□□ -1.73
NKX3-1Q99801 RNA5SP464-201ENST00000516251 108 ntBASIC4.27□□□□□ -1.73
NKX3-1Q99801 SCARNA1-201ENST00000517138 166 ntBASIC4.27□□□□□ -1.73
NKX3-1Q99801 AP003110.1-201ENST00000526976 717 ntTSL 1 (best) BASIC4.27□□□□□ -1.73
Retrieved 100 of 98,524 protein–RNA pairs in 104.3 ms