Protein–RNA interactions for Protein: Q96QK1

VPS35, Vacuolar protein sorting-associated protein 35, humanhuman

Predictions only

Length 796 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35Q96QK1 AC067931.1-201ENST00000624190 671 ntBASIC4.62□□□□□ -1.67
VPS35Q96QK1 U3.53-201ENST00000628922 216 ntBASIC4.62□□□□□ -1.67
VPS35Q96QK1 OR56A1-202ENST00000641423 6096 ntAPPRIS P1 BASIC4.62□□□□□ -1.67
VPS35Q96QK1 IMPG2-201ENST00000193391 8337 ntAPPRIS P1 TSL 1 (best) BASIC4.62□□□□□ -1.67
VPS35Q96QK1 ZNF382-204ENST00000439428 2742 ntAPPRIS ALT2 TSL 1 (best) BASIC4.62□□□□□ -1.67
VPS35Q96QK1 MTND4P26-201ENST00000415971 1359 ntBASIC4.62□□□□□ -1.67
VPS35Q96QK1 AC135352.1-201ENST00000506173 1418 ntBASIC4.62□□□□□ -1.67
VPS35Q96QK1 AC064875.1-201ENST00000425974 1942 ntTSL 2 BASIC4.62□□□□□ -1.67
VPS35Q96QK1 AC012618.3-205ENST00000637896 1496 ntBASIC4.62□□□□□ -1.67
VPS35Q96QK1 EEF1A1-211ENST00000615060 3508 ntTSL 5 BASIC4.62□□□□□ -1.67
VPS35Q96QK1 KARSP3-201ENST00000571212 1504 ntBASIC4.62□□□□□ -1.67
VPS35Q96QK1 CACNB4-273ENST00000638091 4061 ntTSL 5 BASIC4.62□□□□□ -1.67
VPS35Q96QK1 AL672167.1-205ENST00000641112 3080 ntBASIC4.61□□□□□ -1.67
VPS35Q96QK1 TCN1-201ENST00000257264 1582 ntAPPRIS P1 TSL 1 (best) BASIC4.61□□□□□ -1.67
VPS35Q96QK1 KCNU1-201ENST00000399881 3695 ntAPPRIS P1 TSL 2 BASIC4.61□□□□□ -1.67
VPS35Q96QK1 ENPP3-201ENST00000357639 3162 ntAPPRIS P1 TSL 1 (best) BASIC4.61□□□□□ -1.67
VPS35Q96QK1 EMSY-215ENST00000533248 3798 ntTSL 1 (best) BASIC4.61□□□□□ -1.67
VPS35Q96QK1 LIX1-201ENST00000274382 4026 ntAPPRIS P1 TSL 1 (best) BASIC4.61□□□□□ -1.67
VPS35Q96QK1 SGIP1-204ENST00000371039 4080 ntAPPRIS ALT2 TSL 1 (best) BASIC4.61□□□□□ -1.67
VPS35Q96QK1 CDR1-201ENST00000370532 2467 ntAPPRIS P1 BASIC4.61□□□□□ -1.67
VPS35Q96QK1 LINC01847-201ENST00000522627 5607 ntTSL 1 (best) BASIC4.61□□□□□ -1.67
VPS35Q96QK1 CREM-201ENST00000337656 900 ntAPPRIS ALT1 TSL 5 BASIC4.61□□□□□ -1.67
VPS35Q96QK1 ELSPBP1-201ENST00000339841 1052 ntAPPRIS P2 TSL 1 (best) BASIC4.61□□□□□ -1.67
VPS35Q96QK1 OR13G1-201ENST00000359688 1046 ntAPPRIS P1 BASIC4.61□□□□□ -1.67
VPS35Q96QK1 SNORA71.2-201ENST00000364941 134 ntBASIC4.61□□□□□ -1.67
VPS35Q96QK1 AC083799.1-201ENST00000366451 910 ntBASIC4.61□□□□□ -1.67
VPS35Q96QK1 CARD16-202ENST00000375706 686 ntAPPRIS P1 TSL 1 (best) BASIC4.61□□□□□ -1.67
VPS35Q96QK1 SNORA70F-201ENST00000384142 135 ntBASIC4.61□□□□□ -1.67
VPS35Q96QK1 MIR585-201ENST00000384887 94 ntBASIC4.61□□□□□ -1.67
VPS35Q96QK1 AL049697.2-201ENST00000403708 294 ntBASIC4.61□□□□□ -1.67
VPS35Q96QK1 AL592291.1-201ENST00000403830 352 ntBASIC4.61□□□□□ -1.67
VPS35Q96QK1 RN7SKP106-201ENST00000410832 272 ntBASIC4.61□□□□□ -1.67
VPS35Q96QK1 AC019050.1-201ENST00000418508 492 ntBASIC4.61□□□□□ -1.67
VPS35Q96QK1 AL357315.1-201ENST00000422930 254 ntTSL 5 BASIC4.61□□□□□ -1.67
VPS35Q96QK1 AL590723.1-201ENST00000426030 629 ntTSL 5 BASIC4.61□□□□□ -1.67
VPS35Q96QK1 UTS2B-203ENST00000427544 676 ntAPPRIS P1 TSL 1 (best) BASIC4.61□□□□□ -1.67
VPS35Q96QK1 LPP-AS1-201ENST00000434996 494 ntTSL 3 BASIC4.61□□□□□ -1.67
VPS35Q96QK1 AL138878.2-201ENST00000440581 1241 ntBASIC4.61□□□□□ -1.67
VPS35Q96QK1 AL353898.1-201ENST00000444055 238 ntBASIC4.61□□□□□ -1.67
VPS35Q96QK1 IMMP2L-205ENST00000450877 761 ntTSL 2 BASIC4.61□□□□□ -1.67
VPS35Q96QK1 AC007000.3-201ENST00000459742 617 ntTSL 3 BASIC4.61□□□□□ -1.67
VPS35Q96QK1 RPL5P30-201ENST00000465511 891 ntBASIC4.61□□□□□ -1.67
VPS35Q96QK1 CREM-230ENST00000474931 626 ntTSL 2 BASIC4.61□□□□□ -1.67
VPS35Q96QK1 RPL12P20-201ENST00000475538 479 ntBASIC4.61□□□□□ -1.67
VPS35Q96QK1 AC025566.1-201ENST00000477153 490 ntTSL 3 BASIC4.61□□□□□ -1.67
VPS35Q96QK1 AC007686.1-201ENST00000488511 463 ntBASIC4.61□□□□□ -1.67
VPS35Q96QK1 LINC01192-207ENST00000492553 836 ntTSL 5 BASIC4.61□□□□□ -1.67
VPS35Q96QK1 HMGB3P14-201ENST00000494195 599 ntBASIC4.61□□□□□ -1.67
VPS35Q96QK1 PPM1AP1-201ENST00000502740 1135 ntBASIC4.61□□□□□ -1.67
VPS35Q96QK1 AC098799.3-201ENST00000506095 438 ntBASIC4.61□□□□□ -1.67
VPS35Q96QK1 LINC01486-201ENST00000538041 716 ntTSL 2 BASIC4.61□□□□□ -1.67
VPS35Q96QK1 AP006289.1-201ENST00000538089 277 ntBASIC4.61□□□□□ -1.67
VPS35Q96QK1 AP002518.2-201ENST00000544925 393 ntTSL 5 BASIC4.61□□□□□ -1.67
VPS35Q96QK1 AL591770.1-201ENST00000554475 1131 ntTSL 3 BASIC4.61□□□□□ -1.67
VPS35Q96QK1 ALOX12P2-208ENST00000574183 519 ntTSL 3 BASIC4.61□□□□□ -1.67
VPS35Q96QK1 AJ003147.1-201ENST00000576762 454 ntTSL 3 BASIC4.61□□□□□ -1.67
VPS35Q96QK1 GAPLINC-202ENST00000579007 643 ntTSL 3 BASIC4.61□□□□□ -1.67
VPS35Q96QK1 LINC02565-201ENST00000592678 478 ntTSL 2 BASIC4.61□□□□□ -1.67
VPS35Q96QK1 SNORD91B-202ENST00000608459 222 ntBASIC4.61□□□□□ -1.67
VPS35Q96QK1 AC009704.2-201ENST00000618739 483 ntBASIC4.61□□□□□ -1.67
VPS35Q96QK1 AC004232.3-201ENST00000622977 525 ntBASIC4.61□□□□□ -1.67
VPS35Q96QK1 CASP1-217ENST00000640184 327 ntTSL 1 (best) BASIC4.61□□□□□ -1.67
VPS35Q96QK1 RBBP6-203ENST00000381039 3384 ntTSL 1 (best) BASIC4.61□□□□□ -1.67
VPS35Q96QK1 ALS2CR12-201ENST00000286190 1769 ntAPPRIS P3 TSL 1 (best) BASIC4.6□□□□□ -1.67
VPS35Q96QK1 IL1R1-204ENST00000409929 1858 ntTSL 1 (best) BASIC4.6□□□□□ -1.67
VPS35Q96QK1 PUS7L-201ENST00000344862 13593 ntAPPRIS P1 TSL 1 (best) BASIC4.6□□□□□ -1.67
VPS35Q96QK1 AC104662.3-202ENST00000507794 4055 ntTSL 2 BASIC4.6□□□□□ -1.67
VPS35Q96QK1 MAPK10-286ENST00000641208 8747 ntBASIC4.6□□□□□ -1.67
VPS35Q96QK1 RN7SKP115-201ENST00000363177 317 ntBASIC4.6□□□□□ -1.67
VPS35Q96QK1 MANSC4-201ENST00000381273 1023 ntAPPRIS P1 TSL 5 BASIC4.6□□□□□ -1.67
VPS35Q96QK1 ARL4A-204ENST00000396664 1144 ntAPPRIS P1 TSL 1 (best) BASIC4.6□□□□□ -1.67
VPS35Q96QK1 SDHCP2-201ENST00000398565 501 ntBASIC4.6□□□□□ -1.67
VPS35Q96QK1 AL080315.1-201ENST00000406055 466 ntBASIC4.6□□□□□ -1.67
VPS35Q96QK1 RPL26P37-201ENST00000411983 438 ntBASIC4.6□□□□□ -1.67
VPS35Q96QK1 AC093159.1-201ENST00000416845 424 ntTSL 3 BASIC4.6□□□□□ -1.67
VPS35Q96QK1 AC006055.1-201ENST00000432423 411 ntTSL 3 BASIC4.6□□□□□ -1.67
VPS35Q96QK1 TRIM31-AS1-204ENST00000440874 549 ntTSL 3 BASIC4.6□□□□□ -1.67
VPS35Q96QK1 AL358176.1-201ENST00000457477 357 ntTSL 5 BASIC4.6□□□□□ -1.67
VPS35Q96QK1 SCARNA10-201ENST00000459255 330 ntBASIC4.6□□□□□ -1.67
VPS35Q96QK1 AC104763.1-201ENST00000475274 360 ntBASIC4.6□□□□□ -1.67
VPS35Q96QK1 MTND4LP2-201ENST00000502312 285 ntBASIC4.6□□□□□ -1.67
VPS35Q96QK1 AC073429.1-201ENST00000511749 503 ntTSL 3 BASIC4.6□□□□□ -1.67
VPS35Q96QK1 AC007016.1-201ENST00000512110 244 ntBASIC4.6□□□□□ -1.67
VPS35Q96QK1 IGHVIII-2-1-201ENST00000518843 291 ntBASIC4.6□□□□□ -1.67
VPS35Q96QK1 THUMPD3-AS1-210ENST00000519043 1115 ntTSL 3 BASIC4.6□□□□□ -1.67
VPS35Q96QK1 AP001978.1-201ENST00000526851 834 ntTSL 2 BASIC4.6□□□□□ -1.67
VPS35Q96QK1 AL929601.2-201ENST00000549951 381 ntTSL 4 BASIC4.6□□□□□ -1.67
VPS35Q96QK1 AC067805.1-201ENST00000559344 470 ntBASIC4.6□□□□□ -1.67
VPS35Q96QK1 AC005162.3-202ENST00000609495 483 ntTSL 5 BASIC4.6□□□□□ -1.67
VPS35Q96QK1 CCL4L2-215ENST00000620055 537 ntTSL 1 (best) BASIC4.6□□□□□ -1.67
VPS35Q96QK1 CCL4-203ENST00000621626 552 ntTSL 1 (best) BASIC4.6□□□□□ -1.67
VPS35Q96QK1 OR5R1-201ENST00000623286 975 ntAPPRIS P1 BASIC4.6□□□□□ -1.67
VPS35Q96QK1 CYP3A43-203ENST00000342499 1396 ntTSL 1 (best) BASIC4.6□□□□□ -1.67
VPS35Q96QK1 TRIM77-201ENST00000398290 1353 ntAPPRIS P1 TSL 5 BASIC4.6□□□□□ -1.67
VPS35Q96QK1 OSBPL11-201ENST00000296220 4191 ntAPPRIS P1 TSL 1 (best) BASIC4.6□□□□□ -1.67
VPS35Q96QK1 UGT2A3-201ENST00000251566 2965 ntAPPRIS P1 TSL 1 (best) BASIC4.6□□□□□ -1.67
VPS35Q96QK1 MYCT1-201ENST00000367245 3030 ntAPPRIS P1 TSL 1 (best) BASIC4.6□□□□□ -1.67
VPS35Q96QK1 HNMT-202ENST00000280097 3295 ntAPPRIS P1 TSL 1 (best) BASIC4.6□□□□□ -1.67
VPS35Q96QK1 USP29-202ENST00000598197 3284 ntAPPRIS P1 BASIC4.6□□□□□ -1.67
VPS35Q96QK1 R3HCC1L-201ENST00000298999 3379 ntAPPRIS P1 TSL 5 BASIC4.6□□□□□ -1.67
Retrieved 100 of 98,524 protein–RNA pairs in 104.8 ms