Protein–RNA interactions for Protein: Q96MF4

CCDC140, Coiled-coil domain-containing protein 140, humanhuman

Predictions only

Length 163 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC140Q96MF4 AC245054.1-201ENST00000420944 258 ntBASIC5.26□□□□□ -1.57
CCDC140Q96MF4 TEX41-204ENST00000423031 491 ntTSL 4 BASIC5.26□□□□□ -1.57
CCDC140Q96MF4 AC012498.1-201ENST00000424037 437 ntBASIC5.26□□□□□ -1.57
CCDC140Q96MF4 AL049594.1-201ENST00000432834 805 ntTSL 3 BASIC5.26□□□□□ -1.57
CCDC140Q96MF4 AL590399.4-201ENST00000436561 601 ntBASIC5.26□□□□□ -1.57
CCDC140Q96MF4 AL136380.1-201ENST00000447970 162 ntBASIC5.26□□□□□ -1.57
CCDC140Q96MF4 RPL23AP28-201ENST00000448062 470 ntBASIC5.26□□□□□ -1.57
CCDC140Q96MF4 RPL7P52-201ENST00000449200 742 ntBASIC5.26□□□□□ -1.57
CCDC140Q96MF4 TCEA1P1-201ENST00000449716 880 ntBASIC5.26□□□□□ -1.57
CCDC140Q96MF4 AP1S2P1-201ENST00000457344 379 ntBASIC5.26□□□□□ -1.57
CCDC140Q96MF4 C1orf105-204ENST00000460397 462 ntTSL 3 BASIC5.26□□□□□ -1.57
CCDC140Q96MF4 RN7SL390P-201ENST00000470634 284 ntBASIC5.26□□□□□ -1.57
CCDC140Q96MF4 RNF138P1-201ENST00000502765 546 ntBASIC5.26□□□□□ -1.57
CCDC140Q96MF4 AC112198.3-201ENST00000505950 441 ntTSL 3 BASIC5.26□□□□□ -1.57
CCDC140Q96MF4 AC011411.1-201ENST00000509592 876 ntBASIC5.26□□□□□ -1.57
CCDC140Q96MF4 SNX18P23-201ENST00000510867 677 ntBASIC5.26□□□□□ -1.57
CCDC140Q96MF4 AC093677.1-201ENST00000514414 678 ntBASIC5.26□□□□□ -1.57
CCDC140Q96MF4 ZNF706-212ENST00000520984 782 ntAPPRIS P1 TSL 5 BASIC5.26□□□□□ -1.57
CCDC140Q96MF4 AC104383.1-201ENST00000530297 370 ntBASIC5.26□□□□□ -1.57
CCDC140Q96MF4 AP002370.2-201ENST00000531424 545 ntTSL 3 BASIC5.26□□□□□ -1.57
CCDC140Q96MF4 AC002056.2-201ENST00000532913 284 ntTSL 5 BASIC5.26□□□□□ -1.57
CCDC140Q96MF4 AP003034.1-201ENST00000534621 422 ntBASIC5.26□□□□□ -1.57
CCDC140Q96MF4 AL133163.3-201ENST00000556448 504 ntTSL 5 BASIC5.26□□□□□ -1.57
CCDC140Q96MF4 AC092332.1-201ENST00000563684 829 ntBASIC5.26□□□□□ -1.57
CCDC140Q96MF4 AC004232.1-201ENST00000571388 208 ntBASIC5.26□□□□□ -1.57
CCDC140Q96MF4 MIR3167-201ENST00000579623 85 ntBASIC5.26□□□□□ -1.57
CCDC140Q96MF4 MIR378H-201ENST00000579966 83 ntBASIC5.26□□□□□ -1.57
CCDC140Q96MF4 AC060780.3-201ENST00000589464 80 ntBASIC5.26□□□□□ -1.57
CCDC140Q96MF4 AC011518.1-202ENST00000592668 407 ntTSL 5 BASIC5.26□□□□□ -1.57
CCDC140Q96MF4 LINC02028-206ENST00000593326 810 ntTSL 5 BASIC5.26□□□□□ -1.57
CCDC140Q96MF4 ZRANB2-AS2-215ENST00000596952 624 ntTSL 5 BASIC5.26□□□□□ -1.57
CCDC140Q96MF4 ZNF415-218ENST00000599261 601 ntTSL 3 BASIC5.26□□□□□ -1.57
CCDC140Q96MF4 AL356055.1-201ENST00000602528 446 ntBASIC5.26□□□□□ -1.57
CCDC140Q96MF4 AC012065.3-201ENST00000602736 439 ntBASIC5.26□□□□□ -1.57
CCDC140Q96MF4 AC020765.1-201ENST00000604296 328 ntBASIC5.26□□□□□ -1.57
CCDC140Q96MF4 AL136295.6-201ENST00000610486 658 ntBASIC5.26□□□□□ -1.57
CCDC140Q96MF4 MRPL57P3-201ENST00000619218 176 ntBASIC5.26□□□□□ -1.57
CCDC140Q96MF4 AC159540.2-206ENST00000619371 355 ntTSL 3 BASIC5.26□□□□□ -1.57
CCDC140Q96MF4 OR1N1-202ENST00000619659 939 ntBASIC5.26□□□□□ -1.57
CCDC140Q96MF4 AL354718.1-201ENST00000619764 589 ntBASIC5.26□□□□□ -1.57
CCDC140Q96MF4 NAP1L1-204ENST00000535020 1686 ntTSL 2 BASIC5.26□□□□□ -1.57
CCDC140Q96MF4 DOCK4-216ENST00000494651 3282 ntTSL 5 BASIC5.26□□□□□ -1.57
CCDC140Q96MF4 KCNA2-208ENST00000638616 3279 ntAPPRIS P1 TSL 5 BASIC5.26□□□□□ -1.57
CCDC140Q96MF4 OR8B8-202ENST00000642064 3914 ntAPPRIS P1 BASIC5.26□□□□□ -1.57
CCDC140Q96MF4 TBC1D32-201ENST00000275159 4431 ntAPPRIS ALT2 TSL 5 BASIC5.26□□□□□ -1.57
CCDC140Q96MF4 FRMD5-211ENST00000618556 5059 ntTSL 5 BASIC5.26□□□□□ -1.57
CCDC140Q96MF4 RTN4-203ENST00000357376 4110 ntTSL 1 (best) BASIC5.26□□□□□ -1.57
CCDC140Q96MF4 AC011912.1-201ENST00000623483 5819 ntTSL 1 (best) BASIC5.26□□□□□ -1.57
CCDC140Q96MF4 AC007842.1-201ENST00000597336 2039 ntBASIC5.26□□□□□ -1.57
CCDC140Q96MF4 CD226-201ENST00000280200 12319 ntAPPRIS P2 TSL 1 (best) BASIC5.26□□□□□ -1.57
CCDC140Q96MF4 MCTP2-201ENST00000357742 7555 ntAPPRIS P1 TSL 1 (best) BASIC5.26□□□□□ -1.57
CCDC140Q96MF4 MTFR1-203ENST00000458689 2500 ntTSL 1 (best) BASIC5.26□□□□□ -1.57
CCDC140Q96MF4 BCL2L14-203ENST00000308721 1897 ntAPPRIS P1 TSL 1 (best) BASIC5.26□□□□□ -1.57
CCDC140Q96MF4 NABP1-205ENST00000425611 1878 ntAPPRIS P1 TSL 1 (best) BASIC5.26□□□□□ -1.57
CCDC140Q96MF4 NARS2-204ENST00000528850 2137 ntTSL 5 BASIC5.26□□□□□ -1.57
CCDC140Q96MF4 VN1R1-201ENST00000321039 2353 ntAPPRIS P1 BASIC5.26□□□□□ -1.57
CCDC140Q96MF4 CYP4A22-206ENST00000619754 2351 ntTSL 1 (best) BASIC5.26□□□□□ -1.57
CCDC140Q96MF4 NMD3P1-201ENST00000439704 1488 ntBASIC5.26□□□□□ -1.57
CCDC140Q96MF4 GJA10-203ENST00000638915 1479 ntAPPRIS ALT2 TSL 5 BASIC5.26□□□□□ -1.57
CCDC140Q96MF4 ATP13A5-201ENST00000342358 4027 ntAPPRIS P1 TSL 1 (best) BASIC5.26□□□□□ -1.57
CCDC140Q96MF4 MMP13-201ENST00000260302 2716 ntAPPRIS P1 TSL 1 (best) BASIC5.25□□□□□ -1.57
CCDC140Q96MF4 AC010329.2-201ENST00000595195 2737 ntBASIC5.25□□□□□ -1.57
CCDC140Q96MF4 YTHDC1-207ENST00000579690 2983 ntAPPRIS ALT2 TSL 5 BASIC5.25□□□□□ -1.57
CCDC140Q96MF4 MAPK10-344ENST00000641718 3746 ntBASIC5.25□□□□□ -1.57
CCDC140Q96MF4 SGK3-201ENST00000345714 4055 ntAPPRIS P1 TSL 1 (best) BASIC5.25□□□□□ -1.57
CCDC140Q96MF4 DCLK1-208ENST00000615680 7592 ntTSL 2 BASIC5.25□□□□□ -1.57
CCDC140Q96MF4 CNTN3-201ENST00000263665 4948 ntAPPRIS P1 TSL 1 (best) BASIC5.25□□□□□ -1.57
CCDC140Q96MF4 PTPRO-208ENST00000542557 2946 ntAPPRIS ALT2 TSL 1 (best) BASIC5.25□□□□□ -1.57
CCDC140Q96MF4 IL31RA-201ENST00000297015 2695 ntAPPRIS ALT2 TSL 5 BASIC5.25□□□□□ -1.57
CCDC140Q96MF4 CHORDC1-206ENST00000529987 1698 ntTSL 3 BASIC5.25□□□□□ -1.57
CCDC140Q96MF4 AC092447.10-201ENST00000620607 1652 ntBASIC5.25□□□□□ -1.57
CCDC140Q96MF4 CEP120-202ENST00000306481 4629 ntTSL 5 BASIC5.25□□□□□ -1.57
CCDC140Q96MF4 OR5M2P-202ENST00000641241 4242 ntBASIC5.25□□□□□ -1.57
CCDC140Q96MF4 N4BP2-201ENST00000261435 9744 ntAPPRIS P1 TSL 5 BASIC5.25□□□□□ -1.57
CCDC140Q96MF4 AL161911.1-202ENST00000464488 1534 ntAPPRIS P1 TSL 5 BASIC5.25□□□□□ -1.57
CCDC140Q96MF4 LMO3-225ENST00000541295 3498 ntTSL 2 BASIC5.25□□□□□ -1.57
CCDC140Q96MF4 DAZ1-201ENST00000382510 2382 ntAPPRIS ALT2 TSL 1 (best) BASIC5.25□□□□□ -1.57
CCDC140Q96MF4 C2CD6-201ENST00000286195 2104 ntAPPRIS P3 TSL 1 (best) BASIC5.25□□□□□ -1.57
CCDC140Q96MF4 TAS2R42-201ENST00000334266 945 ntAPPRIS P1 BASIC5.25□□□□□ -1.57
CCDC140Q96MF4 Y_RNA.159-201ENST00000363674 87 ntBASIC5.25□□□□□ -1.57
CCDC140Q96MF4 RNU1-55P-201ENST00000365510 158 ntBASIC5.25□□□□□ -1.57
CCDC140Q96MF4 RNU6-761P-201ENST00000384148 107 ntBASIC5.25□□□□□ -1.57
CCDC140Q96MF4 Y_RNA.481-201ENST00000384373 102 ntBASIC5.25□□□□□ -1.57
CCDC140Q96MF4 RNU6-878P-201ENST00000384578 110 ntBASIC5.25□□□□□ -1.57
CCDC140Q96MF4 MIR27A-201ENST00000385073 78 ntBASIC5.25□□□□□ -1.57
CCDC140Q96MF4 RNU6-1009P-201ENST00000390996 107 ntBASIC5.25□□□□□ -1.57
CCDC140Q96MF4 BTBD10P2-201ENST00000404779 676 ntBASIC5.25□□□□□ -1.57
CCDC140Q96MF4 FIGN-202ENST00000409634 746 ntTSL 5 BASIC5.25□□□□□ -1.57
CCDC140Q96MF4 NUP35P2-201ENST00000416748 943 ntBASIC5.25□□□□□ -1.57
CCDC140Q96MF4 AC118754.1-201ENST00000416958 370 ntTSL 3 BASIC5.25□□□□□ -1.57
CCDC140Q96MF4 RPL18AP14-201ENST00000417685 526 ntBASIC5.25□□□□□ -1.57
CCDC140Q96MF4 RPL21P111-201ENST00000418453 477 ntBASIC5.25□□□□□ -1.57
CCDC140Q96MF4 AC012065.2-201ENST00000421295 375 ntBASIC5.25□□□□□ -1.57
CCDC140Q96MF4 SLC25A12-202ENST00000422440 2979 ntAPPRIS P1 TSL 1 (best) BASIC5.25□□□□□ -1.57
CCDC140Q96MF4 RPL7AP14-201ENST00000424041 802 ntBASIC5.25□□□□□ -1.57
CCDC140Q96MF4 AC007283.2-201ENST00000424739 197 ntBASIC5.25□□□□□ -1.57
CCDC140Q96MF4 AC239367.3-201ENST00000428996 814 ntBASIC5.25□□□□□ -1.57
CCDC140Q96MF4 LINC01850-201ENST00000429916 357 ntTSL 3 BASIC5.25□□□□□ -1.57
CCDC140Q96MF4 GAPDHP19-201ENST00000431768 1005 ntBASIC5.25□□□□□ -1.57
CCDC140Q96MF4 AC003989.1-201ENST00000434569 565 ntBASIC5.25□□□□□ -1.57
Retrieved 100 of 98,524 protein–RNA pairs in 107.3 ms