Protein–RNA interactions for Protein: Q53GS9

USP39, U4/U6.U5 tri-snRNP-associated protein 2, humanhuman

Known RBP Predictions only

Length 565 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP39Q53GS9 EAF2-201ENST00000273668 992 ntAPPRIS P1 TSL 1 (best) BASIC5.69□□□□□ -1.5
USP39Q53GS9 OR11H6-201ENST00000315519 993 ntAPPRIS P1 BASIC5.69□□□□□ -1.5
USP39Q53GS9 AC005294.1-201ENST00000355509 281 ntBASIC5.69□□□□□ -1.5
USP39Q53GS9 RNU6-249P-201ENST00000363016 102 ntBASIC5.69□□□□□ -1.5
USP39Q53GS9 Y_RNA.578-201ENST00000390903 88 ntBASIC5.69□□□□□ -1.5
USP39Q53GS9 RN7SKP17-201ENST00000411242 351 ntBASIC5.69□□□□□ -1.5
USP39Q53GS9 AC004074.1-201ENST00000421810 1063 ntBASIC5.69□□□□□ -1.5
USP39Q53GS9 AL135908.1-201ENST00000431394 446 ntTSL 3 BASIC5.69□□□□□ -1.5
USP39Q53GS9 AC005019.2-201ENST00000434321 359 ntTSL 5 BASIC5.69□□□□□ -1.5
USP39Q53GS9 AL589935.1-218ENST00000434683 529 ntTSL 3 BASIC5.69□□□□□ -1.5
USP39Q53GS9 AL121601.2-201ENST00000438019 707 ntBASIC5.69□□□□□ -1.5
USP39Q53GS9 AL590399.3-201ENST00000438072 543 ntTSL 5 BASIC5.69□□□□□ -1.5
USP39Q53GS9 RPL12P3-201ENST00000440080 396 ntBASIC5.69□□□□□ -1.5
USP39Q53GS9 AC019185.1-201ENST00000442718 389 ntBASIC5.69□□□□□ -1.5
USP39Q53GS9 MTCO1P19-201ENST00000443487 500 ntBASIC5.69□□□□□ -1.5
USP39Q53GS9 AC069542.1-201ENST00000445235 557 ntTSL 3 BASIC5.69□□□□□ -1.5
USP39Q53GS9 AL034380.1-201ENST00000448791 306 ntTSL 3 BASIC5.69□□□□□ -1.5
USP39Q53GS9 OR52E3P-201ENST00000452083 936 ntBASIC5.69□□□□□ -1.5
USP39Q53GS9 RPL23AP44-201ENST00000482216 473 ntBASIC5.69□□□□□ -1.5
USP39Q53GS9 RPL38P3-201ENST00000484463 213 ntBASIC5.69□□□□□ -1.5
USP39Q53GS9 AC068724.1-201ENST00000487100 792 ntBASIC5.69□□□□□ -1.5
USP39Q53GS9 LINC02101-201ENST00000505861 725 ntTSL 4 BASIC5.69□□□□□ -1.5
USP39Q53GS9 LINC02271-202ENST00000506379 596 ntTSL 4 BASIC5.69□□□□□ -1.5
USP39Q53GS9 PGAM1P13-201ENST00000507497 754 ntBASIC5.69□□□□□ -1.5
USP39Q53GS9 CDH12P4-201ENST00000517835 295 ntBASIC5.69□□□□□ -1.5
USP39Q53GS9 CDH12P3-201ENST00000517935 295 ntBASIC5.69□□□□□ -1.5
USP39Q53GS9 CDH12P1-201ENST00000518435 295 ntBASIC5.69□□□□□ -1.5
USP39Q53GS9 AC103855.1-201ENST00000525926 564 ntTSL 2 BASIC5.69□□□□□ -1.5
USP39Q53GS9 AC090424.1-201ENST00000535243 736 ntBASIC5.69□□□□□ -1.5
USP39Q53GS9 SNHG1-211ENST00000539921 1071 ntTSL 2 BASIC5.69□□□□□ -1.5
USP39Q53GS9 AC027104.1-201ENST00000563702 681 ntBASIC5.69□□□□□ -1.5
USP39Q53GS9 AC105411.1-203ENST00000568819 601 ntTSL 5 BASIC5.69□□□□□ -1.5
USP39Q53GS9 AC103810.2-203ENST00000584959 631 ntTSL 5 BASIC5.69□□□□□ -1.5
USP39Q53GS9 AC091132.5-204ENST00000586348 630 ntTSL 3 BASIC5.69□□□□□ -1.5
USP39Q53GS9 Z98949.1-202ENST00000600211 1282 ntTSL 5 BASIC5.69□□□□□ -1.5
USP39Q53GS9 IGKV1OR2-9-201ENST00000603957 287 ntBASIC5.69□□□□□ -1.5
USP39Q53GS9 IGKV1OR2-11-201ENST00000604120 287 ntBASIC5.69□□□□□ -1.5
USP39Q53GS9 AC108747.1-201ENST00000609508 535 ntBASIC5.69□□□□□ -1.5
USP39Q53GS9 RMST_10.1-201ENST00000616309 154 ntBASIC5.69□□□□□ -1.5
USP39Q53GS9 AC074140.1-201ENST00000621617 208 ntBASIC5.69□□□□□ -1.5
USP39Q53GS9 LCA5L-203ENST00000380671 2080 ntAPPRIS P1 TSL 1 (best) BASIC5.69□□□□□ -1.5
USP39Q53GS9 PTPRZ1-201ENST00000393386 8175 ntAPPRIS P3 TSL 1 (best) BASIC5.69□□□□□ -1.5
USP39Q53GS9 RAD17-201ENST00000282891 2135 ntTSL 1 (best) BASIC5.69□□□□□ -1.5
USP39Q53GS9 DYRK1A-202ENST00000339659 8654 ntTSL 1 (best) BASIC5.69□□□□□ -1.5
USP39Q53GS9 AC105411.1-201ENST00000568776 1470 ntTSL 4 BASIC5.69□□□□□ -1.5
USP39Q53GS9 PSD3-204ENST00000440756 11690 ntAPPRIS ALT2 TSL 5 BASIC5.69□□□□□ -1.5
USP39Q53GS9 SON-204ENST00000381692 2463 ntTSL 1 (best) BASIC5.69□□□□□ -1.5
USP39Q53GS9 DOCK4-AS1-201ENST00000452714 2494 ntTSL 1 (best) BASIC5.69□□□□□ -1.5
USP39Q53GS9 SPARCL1-202ENST00000418378 2994 ntAPPRIS P1 TSL 5 BASIC5.69□□□□□ -1.5
USP39Q53GS9 SLC1A3-215ENST00000612708 3832 ntTSL 5 BASIC5.69□□□□□ -1.5
USP39Q53GS9 DSC2-202ENST00000280904 12325 ntAPPRIS P1 TSL 1 (best) BASIC5.69□□□□□ -1.5
USP39Q53GS9 PTPRC-209ENST00000442510 5164 ntAPPRIS P4 TSL 1 (best) BASIC5.69□□□□□ -1.5
USP39Q53GS9 IPCEF1-202ENST00000367220 1658 ntAPPRIS ALT2 TSL 2 BASIC5.69□□□□□ -1.5
USP39Q53GS9 UGT2A2-202ENST00000604629 1676 ntAPPRIS P1 TSL 1 (best) BASIC5.69□□□□□ -1.5
USP39Q53GS9 SLCO1C1-208ENST00000545102 2868 ntTSL 2 BASIC5.69□□□□□ -1.5
USP39Q53GS9 NOL4-202ENST00000535384 1853 ntTSL 2 BASIC5.68□□□□□ -1.5
USP39Q53GS9 DLGAP5-202ENST00000395425 2954 ntAPPRIS ALT2 TSL 1 (best) BASIC5.68□□□□□ -1.5
USP39Q53GS9 LINC00240-204ENST00000607607 5607 ntTSL 1 (best) BASIC5.68□□□□□ -1.5
USP39Q53GS9 ZNF248-201ENST00000357328 4795 ntAPPRIS P1 TSL 2 BASIC5.68□□□□□ -1.5
USP39Q53GS9 DCDC1-203ENST00000406071 4758 ntAPPRIS P2 TSL 5 BASIC5.68□□□□□ -1.5
USP39Q53GS9 MEPE-202ENST00000395102 2123 ntAPPRIS ALT2 TSL 5 BASIC5.68□□□□□ -1.5
USP39Q53GS9 CFAP57-204ENST00000528956 3037 ntTSL 2 BASIC5.68□□□□□ -1.5
USP39Q53GS9 AL158152.1-201ENST00000602652 1435 ntBASIC5.68□□□□□ -1.5
USP39Q53GS9 SPA17-201ENST00000227135 853 ntAPPRIS P1 TSL 1 (best) BASIC5.68□□□□□ -1.5
USP39Q53GS9 C8orf59-201ENST00000321777 325 ntTSL 1 (best) BASIC5.68□□□□□ -1.5
USP39Q53GS9 DPPA3-201ENST00000345088 1079 ntAPPRIS P1 TSL 1 (best) BASIC5.68□□□□□ -1.5
USP39Q53GS9 UBE2Q2P1-202ENST00000354771 883 ntBASIC5.68□□□□□ -1.5
USP39Q53GS9 CCL20-201ENST00000358813 800 ntAPPRIS P3 TSL 1 (best) BASIC5.68□□□□□ -1.5
USP39Q53GS9 RNA5SP183-201ENST00000362452 119 ntBASIC5.68□□□□□ -1.5
USP39Q53GS9 U3.10-201ENST00000364459 214 ntBASIC5.68□□□□□ -1.5
USP39Q53GS9 APOOL-201ENST00000373173 1279 ntAPPRIS P2 TSL 1 (best) BASIC5.68□□□□□ -1.5
USP39Q53GS9 TRAJ58-201ENST00000390481 63 ntAPPRIS P1 BASIC5.68□□□□□ -1.5
USP39Q53GS9 RNU1-77P-201ENST00000390868 162 ntBASIC5.68□□□□□ -1.5
USP39Q53GS9 ERHP2-201ENST00000402323 299 ntBASIC5.68□□□□□ -1.5
USP39Q53GS9 ATF1P1-201ENST00000406040 927 ntBASIC5.68□□□□□ -1.5
USP39Q53GS9 RNU2-16P-201ENST00000410712 136 ntBASIC5.68□□□□□ -1.5
USP39Q53GS9 AC097717.1-228ENST00000417006 754 ntTSL 3 BASIC5.68□□□□□ -1.5
USP39Q53GS9 PCDH9-AS2-201ENST00000419371 538 ntTSL 3 BASIC5.68□□□□□ -1.5
USP39Q53GS9 TMEM196-203ENST00000422233 775 ntTSL 5 BASIC5.68□□□□□ -1.5
USP39Q53GS9 MTND4P28-201ENST00000426217 387 ntBASIC5.68□□□□□ -1.5
USP39Q53GS9 DPRXP1-201ENST00000426312 460 ntBASIC5.68□□□□□ -1.5
USP39Q53GS9 TSSK4-203ENST00000428351 576 ntTSL 2 BASIC5.68□□□□□ -1.5
USP39Q53GS9 AC007422.1-201ENST00000433065 1008 ntTSL 5 BASIC5.68□□□□□ -1.5
USP39Q53GS9 AC005518.1-201ENST00000448131 1116 ntTSL 2 BASIC5.68□□□□□ -1.5
USP39Q53GS9 AP000472.1-201ENST00000452500 530 ntTSL 2 BASIC5.68□□□□□ -1.5
USP39Q53GS9 RPL7AP6-201ENST00000477943 801 ntBASIC5.68□□□□□ -1.5
USP39Q53GS9 HAX1-208ENST00000483970 1151 ntTSL 2 BASIC5.68□□□□□ -1.5
USP39Q53GS9 AC073610.1-201ENST00000489971 396 ntBASIC5.68□□□□□ -1.5
USP39Q53GS9 LINC02499-201ENST00000502291 763 ntTSL 3 BASIC5.68□□□□□ -1.5
USP39Q53GS9 CRISP1-203ENST00000505118 1296 ntAPPRIS P1 TSL 1 (best) BASIC5.68□□□□□ -1.5
USP39Q53GS9 AC008565.1-201ENST00000509046 885 ntBASIC5.68□□□□□ -1.5
USP39Q53GS9 AC008837.1-201ENST00000511513 412 ntBASIC5.68□□□□□ -1.5
USP39Q53GS9 AC097515.1-202ENST00000511818 371 ntTSL 3 BASIC5.68□□□□□ -1.5
USP39Q53GS9 AC018682.2-201ENST00000517716 399 ntTSL 5 BASIC5.68□□□□□ -1.5
USP39Q53GS9 AC040914.1-201ENST00000518674 318 ntTSL 3 BASIC5.68□□□□□ -1.5
USP39Q53GS9 AC026904.2-201ENST00000521359 537 ntTSL 3 BASIC5.68□□□□□ -1.5
USP39Q53GS9 AC104417.1-201ENST00000523974 751 ntBASIC5.68□□□□□ -1.5
USP39Q53GS9 AC078962.4-201ENST00000546135 254 ntTSL 3 BASIC5.68□□□□□ -1.5
USP39Q53GS9 AC022662.1-201ENST00000580252 331 ntBASIC5.68□□□□□ -1.5
USP39Q53GS9 ARL2BPP3-202ENST00000580773 420 ntTSL 5 BASIC5.68□□□□□ -1.5
Retrieved 100 of 98,524 protein–RNA pairs in 73 ms