Protein–RNA interactions for Protein: P55317

FOXA1, Hepatocyte nuclear factor 3-alpha, humanhuman

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA1P55317 RNA5SP39-201ENST00000411245 120 ntBASIC4.08□□□□□ -1.76
FOXA1P55317 RMDN2-207ENST00000417700 1426 ntTSL 1 (best) BASIC4.08□□□□□ -1.76
FOXA1P55317 RBMY2KP-201ENST00000418221 992 ntBASIC4.08□□□□□ -1.76
FOXA1P55317 KPNA2P2-201ENST00000419546 1489 ntBASIC4.08□□□□□ -1.76
FOXA1P55317 AC069285.2-201ENST00000440210 275 ntBASIC4.08□□□□□ -1.76
FOXA1P55317 LINC01781-202ENST00000443104 591 ntTSL 2 BASIC4.08□□□□□ -1.76
FOXA1P55317 PHBP16-201ENST00000446318 950 ntBASIC4.08□□□□□ -1.76
FOXA1P55317 RPL23AP81-201ENST00000455252 467 ntBASIC4.08□□□□□ -1.76
FOXA1P55317 TTC26-205ENST00000474035 1193 ntTSL 1 (best) BASIC4.08□□□□□ -1.76
FOXA1P55317 RPL7AP10-201ENST00000481016 791 ntBASIC4.08□□□□□ -1.76
FOXA1P55317 AC010374.1-201ENST00000503762 1237 ntBASIC4.08□□□□□ -1.76
FOXA1P55317 LINC02230-201ENST00000511174 301 ntTSL 5 BASIC4.08□□□□□ -1.76
FOXA1P55317 AC027804.1-201ENST00000534653 529 ntTSL 2 BASIC4.08□□□□□ -1.76
FOXA1P55317 LINC02307-201ENST00000553827 257 ntTSL 3 BASIC4.08□□□□□ -1.76
FOXA1P55317 LINC00520-201ENST00000554186 831 ntTSL 5 BASIC4.08□□□□□ -1.76
FOXA1P55317 AC074237.1-201ENST00000577674 471 ntTSL 3 BASIC4.08□□□□□ -1.76
FOXA1P55317 CCDC178-208ENST00000579916 1017 ntAPPRIS ALT2 TSL 5 BASIC4.08□□□□□ -1.76
FOXA1P55317 AC104984.1-201ENST00000581633 697 ntTSL 3 BASIC4.08□□□□□ -1.76
FOXA1P55317 AC140479.6-201ENST00000633535 357 ntBASIC4.08□□□□□ -1.76
FOXA1P55317 OR52E4-202ENST00000641726 2947 ntAPPRIS P1 BASIC4.08□□□□□ -1.76
FOXA1P55317 FGD4-211ENST00000531134 2924 ntTSL 2 BASIC4.08□□□□□ -1.76
FOXA1P55317 PLS1-211ENST00000497002 2258 ntAPPRIS P1 TSL 1 (best) BASIC4.07□□□□□ -1.76
FOXA1P55317 CFAP70-203ENST00000355577 3691 ntTSL 5 BASIC4.07□□□□□ -1.76
FOXA1P55317 BRCA2-201ENST00000380152 11986 ntAPPRIS P1 TSL 5 BASIC4.07□□□□□ -1.76
FOXA1P55317 CCNYL2-202ENST00000637719 3311 ntTSL 2 BASIC4.07□□□□□ -1.76
FOXA1P55317 AL137100.1-201ENST00000556703 1620 ntBASIC4.07□□□□□ -1.76
FOXA1P55317 EXOC1-202ENST00000349598 3248 ntAPPRIS ALT1 TSL 2 BASIC4.07□□□□□ -1.76
FOXA1P55317 GHR-202ENST00000357703 4316 ntTSL 5 BASIC4.07□□□□□ -1.76
FOXA1P55317 MS4A14-203ENST00000395005 2813 ntTSL 1 (best) BASIC4.07□□□□□ -1.76
FOXA1P55317 GAS2L3-202ENST00000537247 2742 ntTSL 2 BASIC4.07□□□□□ -1.76
FOXA1P55317 OR1L3-201ENST00000304820 1118 ntAPPRIS P1 BASIC4.07□□□□□ -1.76
FOXA1P55317 CCL20-201ENST00000358813 800 ntAPPRIS P3 TSL 1 (best) BASIC4.07□□□□□ -1.76
FOXA1P55317 RN7SKP103-201ENST00000363848 320 ntBASIC4.07□□□□□ -1.76
FOXA1P55317 TEX30-204ENST00000376027 1106 ntTSL 5 BASIC4.07□□□□□ -1.76
FOXA1P55317 RNA5SP332-201ENST00000391063 115 ntBASIC4.07□□□□□ -1.76
FOXA1P55317 RN7SKP235-201ENST00000410662 305 ntBASIC4.07□□□□□ -1.76
FOXA1P55317 RNA5SP104-201ENST00000410989 118 ntBASIC4.07□□□□□ -1.76
FOXA1P55317 AC096669.1-202ENST00000413708 616 ntTSL 2 BASIC4.07□□□□□ -1.76
FOXA1P55317 AC004552.1-201ENST00000419089 348 ntBASIC4.07□□□□□ -1.76
FOXA1P55317 AL353608.1-201ENST00000419576 416 ntTSL 5 BASIC4.07□□□□□ -1.76
FOXA1P55317 SETP10-201ENST00000424368 814 ntBASIC4.07□□□□□ -1.76
FOXA1P55317 AL451070.1-201ENST00000430143 439 ntTSL 5 BASIC4.07□□□□□ -1.76
FOXA1P55317 AL132765.1-201ENST00000434165 553 ntBASIC4.07□□□□□ -1.76
FOXA1P55317 AC006466.1-201ENST00000438721 289 ntBASIC4.07□□□□□ -1.76
FOXA1P55317 TMEM212-AS1-201ENST00000449106 427 ntTSL 3 BASIC4.07□□□□□ -1.76
FOXA1P55317 CXorf51A-201ENST00000458472 431 ntAPPRIS P1 TSL 2 BASIC4.07□□□□□ -1.76
FOXA1P55317 RN7SL98P-201ENST00000462271 300 ntBASIC4.07□□□□□ -1.76
FOXA1P55317 RPS26P3-201ENST00000470205 348 ntBASIC4.07□□□□□ -1.76
FOXA1P55317 RPS29P19-201ENST00000479709 171 ntBASIC4.07□□□□□ -1.76
FOXA1P55317 AC090543.2-201ENST00000483963 348 ntBASIC4.07□□□□□ -1.76
FOXA1P55317 AC004057.1-201ENST00000485827 348 ntBASIC4.07□□□□□ -1.76
FOXA1P55317 AC107027.1-201ENST00000503006 575 ntTSL 2 BASIC4.07□□□□□ -1.76
FOXA1P55317 AC097478.1-202ENST00000508021 567 ntTSL 4 BASIC4.07□□□□□ -1.76
FOXA1P55317 AC111000.3-201ENST00000508057 576 ntBASIC4.07□□□□□ -1.76
FOXA1P55317 ZCCHC10-209ENST00000513541 794 ntAPPRIS ALT2 TSL 2 BASIC4.07□□□□□ -1.76
FOXA1P55317 AC008574.1-201ENST00000514240 433 ntTSL 3 BASIC4.07□□□□□ -1.76
FOXA1P55317 RNA5SP519-201ENST00000516480 119 ntBASIC4.07□□□□□ -1.76
FOXA1P55317 RNA5SP360-201ENST00000516555 118 ntBASIC4.07□□□□□ -1.76
FOXA1P55317 AC100801.1-201ENST00000517368 517 ntTSL 3 BASIC4.07□□□□□ -1.76
FOXA1P55317 AC133634.1-201ENST00000517695 566 ntTSL 3 BASIC4.07□□□□□ -1.76
FOXA1P55317 SDCBP-207ENST00000520168 1097 ntTSL 2 BASIC4.07□□□□□ -1.76
FOXA1P55317 NRG3-205ENST00000537893 1174 ntTSL 1 (best) BASIC4.07□□□□□ -1.76
FOXA1P55317 AC063950.1-201ENST00000552036 308 ntBASIC4.07□□□□□ -1.76
FOXA1P55317 AL139022.1-201ENST00000556127 486 ntTSL 5 BASIC4.07□□□□□ -1.76
FOXA1P55317 AC011824.3-201ENST00000585093 563 ntTSL 4 BASIC4.07□□□□□ -1.76
FOXA1P55317 PSMD5-AS1-203ENST00000589026 525 ntTSL 5 BASIC4.07□□□□□ -1.76
FOXA1P55317 LINC02565-201ENST00000592678 478 ntTSL 2 BASIC4.07□□□□□ -1.76
FOXA1P55317 AC093765.1-201ENST00000603758 881 ntBASIC4.07□□□□□ -1.76
FOXA1P55317 MIR6748-201ENST00000610433 71 ntBASIC4.07□□□□□ -1.76
FOXA1P55317 MIR6798-201ENST00000612887 67 ntBASIC4.07□□□□□ -1.76
FOXA1P55317 AC100827.5-201ENST00000615883 426 ntBASIC4.07□□□□□ -1.76
FOXA1P55317 AC074140.1-201ENST00000621617 208 ntBASIC4.07□□□□□ -1.76
FOXA1P55317 AL390964.1-201ENST00000622486 845 ntTSL 3 BASIC4.07□□□□□ -1.76
FOXA1P55317 AC002044.3-201ENST00000623314 541 ntBASIC4.07□□□□□ -1.76
FOXA1P55317 ADGRL3-215ENST00000512091 12636 ntTSL 1 (best) BASIC4.07□□□□□ -1.76
FOXA1P55317 LCOR-204ENST00000371103 10342 ntAPPRIS P3 TSL 1 (best) BASIC4.07□□□□□ -1.76
FOXA1P55317 DGKI-204ENST00000453654 12928 ntAPPRIS ALT2 TSL 1 (best) BASIC4.07□□□□□ -1.76
FOXA1P55317 PLCB4-206ENST00000414679 3947 ntAPPRIS ALT1 TSL 5 BASIC4.07□□□□□ -1.76
FOXA1P55317 FMO2-201ENST00000209929 3851 ntAPPRIS P1 TSL 1 (best) BASIC4.07□□□□□ -1.76
FOXA1P55317 SLCO1B7-201ENST00000421593 1923 ntAPPRIS P1 TSL 1 (best) BASIC4.07□□□□□ -1.76
FOXA1P55317 C8orf4-201ENST00000315792 1854 ntAPPRIS P1 BASIC4.07□□□□□ -1.76
FOXA1P55317 QSER1-201ENST00000399302 9335 ntAPPRIS P1 TSL 1 (best) BASIC4.07□□□□□ -1.76
FOXA1P55317 PTPRC-201ENST00000348564 4626 ntAPPRIS ALT2 TSL 1 (best) BASIC4.07□□□□□ -1.76
FOXA1P55317 EIF2AP4-201ENST00000424793 1781 ntBASIC4.07□□□□□ -1.76
FOXA1P55317 CYP19A1-201ENST00000396402 4417 ntAPPRIS P1 TSL 1 (best) BASIC4.07□□□□□ -1.76
FOXA1P55317 SNCA-AS1-201ENST00000501215 2646 ntTSL 2 BASIC4.07□□□□□ -1.76
FOXA1P55317 FOXP2-226ENST00000635638 2598 ntAPPRIS ALT1 TSL 5 BASIC4.07□□□□□ -1.76
FOXA1P55317 AL158163.1-201ENST00000603915 1649 ntBASIC4.06□□□□□ -1.76
FOXA1P55317 POSTN-202ENST00000379743 3196 ntTSL 1 (best) BASIC4.06□□□□□ -1.76
FOXA1P55317 ZNF382-203ENST00000435416 3865 ntAPPRIS ALT1 TSL 1 (best) BASIC4.06□□□□□ -1.76
FOXA1P55317 SMARCA2-201ENST00000302401 2242 ntTSL 2 BASIC4.06□□□□□ -1.76
FOXA1P55317 GPR180-201ENST00000376958 8822 ntAPPRIS P1 TSL 1 (best) BASIC4.06□□□□□ -1.76
FOXA1P55317 IFI44L-201ENST00000370751 5874 ntAPPRIS P1 TSL 1 (best) BASIC4.06□□□□□ -1.76
FOXA1P55317 MCF2-201ENST00000338585 2826 ntAPPRIS ALT2 TSL 1 (best) BASIC4.06□□□□□ -1.76
FOXA1P55317 DDX18P6-201ENST00000450119 1997 ntBASIC4.06□□□□□ -1.76
FOXA1P55317 OSBPL8-202ENST00000393249 7047 ntAPPRIS ALT1 TSL 1 (best) BASIC4.06□□□□□ -1.76
FOXA1P55317 OR14C36-201ENST00000317861 939 ntAPPRIS P1 BASIC4.06□□□□□ -1.76
FOXA1P55317 MANSC4-201ENST00000381273 1023 ntAPPRIS P1 TSL 5 BASIC4.06□□□□□ -1.76
FOXA1P55317 AC233289.1-201ENST00000403700 508 ntBASIC4.06□□□□□ -1.76
FOXA1P55317 MIR1179-201ENST00000408703 91 ntBASIC4.06□□□□□ -1.76
Retrieved 100 of 98,524 protein–RNA pairs in 132.8 ms