Protein–RNA interactions for Protein: P49639

HOXA1, Homeobox protein Hox-A1, humanhuman

Predicted RBP Predictions only

Length 335 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA1P49639 AL162388.1-201ENST00000450912 352 ntBASIC4.34□□□□□ -1.71
HOXA1P49639 VDAC2P4-201ENST00000452925 711 ntBASIC4.34□□□□□ -1.71
HOXA1P49639 CYP4F62P-203ENST00000455215 552 ntTSL 4 BASIC4.34□□□□□ -1.71
HOXA1P49639 TRBV2-201ENST00000455382 421 ntAPPRIS P1 BASIC4.34□□□□□ -1.71
HOXA1P49639 YRDCP3-201ENST00000456507 480 ntBASIC4.34□□□□□ -1.71
HOXA1P49639 AC110749.1-201ENST00000462007 357 ntBASIC4.34□□□□□ -1.71
HOXA1P49639 AC092754.1-201ENST00000472975 479 ntBASIC4.34□□□□□ -1.71
HOXA1P49639 RPS6P4-201ENST00000494693 758 ntBASIC4.34□□□□□ -1.71
HOXA1P49639 CBX1-205ENST00000495350 550 ntTSL 2 BASIC4.34□□□□□ -1.71
HOXA1P49639 RPL21P131-201ENST00000497298 483 ntBASIC4.34□□□□□ -1.71
HOXA1P49639 AC023050.1-201ENST00000498198 304 ntBASIC4.34□□□□□ -1.71
HOXA1P49639 AC109481.1-201ENST00000509173 282 ntBASIC4.34□□□□□ -1.71
HOXA1P49639 LINC02147-201ENST00000509367 807 ntTSL 2 BASIC4.34□□□□□ -1.71
HOXA1P49639 IMPA1P1-201ENST00000510718 842 ntBASIC4.34□□□□□ -1.71
HOXA1P49639 AC093297.1-201ENST00000511712 591 ntTSL 4 BASIC4.34□□□□□ -1.71
HOXA1P49639 RNU6-615P-201ENST00000516065 106 ntBASIC4.34□□□□□ -1.71
HOXA1P49639 OR4A2P-201ENST00000527276 913 ntBASIC4.34□□□□□ -1.71
HOXA1P49639 AP000648.1-201ENST00000529682 397 ntBASIC4.34□□□□□ -1.71
HOXA1P49639 LINC01493-201ENST00000530102 460 ntTSL 5 BASIC4.34□□□□□ -1.71
HOXA1P49639 AC084200.1-201ENST00000547370 547 ntTSL 4 BASIC4.34□□□□□ -1.71
HOXA1P49639 LINC02294-201ENST00000549330 497 ntTSL 2 BASIC4.34□□□□□ -1.71
HOXA1P49639 TIMM9-206ENST00000555593 796 ntAPPRIS P1 TSL 1 (best) BASIC4.34□□□□□ -1.71
HOXA1P49639 LINC00929-203ENST00000556213 713 ntTSL 2 BASIC4.34□□□□□ -1.71
HOXA1P49639 AC009087.1-201ENST00000561827 369 ntTSL 3 BASIC4.34□□□□□ -1.71
HOXA1P49639 AC009097.3-201ENST00000563557 1018 ntBASIC4.34□□□□□ -1.71
HOXA1P49639 AC009101.2-201ENST00000564293 456 ntTSL 3 BASIC4.34□□□□□ -1.71
HOXA1P49639 AC007610.2-201ENST00000566770 666 ntTSL 3 BASIC4.34□□□□□ -1.71
HOXA1P49639 MRPS21P7-201ENST00000566937 238 ntBASIC4.34□□□□□ -1.71
HOXA1P49639 AC130371.1-201ENST00000577023 230 ntTSL 5 BASIC4.34□□□□□ -1.71
HOXA1P49639 AC007431.2-201ENST00000577189 563 ntTSL 2 BASIC4.34□□□□□ -1.71
HOXA1P49639 AL354740.1-205ENST00000586413 1230 ntTSL 5 BASIC4.34□□□□□ -1.71
HOXA1P49639 RPL27-207ENST00000590864 569 ntTSL 2 BASIC4.34□□□□□ -1.71
HOXA1P49639 ZNF682-204ENST00000593468 581 ntTSL 4 BASIC4.34□□□□□ -1.71
HOXA1P49639 AC079315.1-201ENST00000602952 623 ntBASIC4.34□□□□□ -1.71
HOXA1P49639 AC009237.13-201ENST00000603193 276 ntBASIC4.34□□□□□ -1.71
HOXA1P49639 AC002487.1-201ENST00000604565 994 ntBASIC4.34□□□□□ -1.71
HOXA1P49639 AL392112.1-201ENST00000605115 829 ntBASIC4.34□□□□□ -1.71
HOXA1P49639 AL031601.1-201ENST00000605702 394 ntBASIC4.34□□□□□ -1.71
HOXA1P49639 AC107952.2-201ENST00000606048 486 ntBASIC4.34□□□□□ -1.71
HOXA1P49639 AC092106.3-201ENST00000611308 722 ntBASIC4.34□□□□□ -1.71
HOXA1P49639 AC021755.4-201ENST00000616620 456 ntBASIC4.34□□□□□ -1.71
HOXA1P49639 AC024023.1-201ENST00000624530 922 ntBASIC4.34□□□□□ -1.71
HOXA1P49639 METTL15-211ENST00000634762 718 ntTSL 5 BASIC4.34□□□□□ -1.71
HOXA1P49639 Z98755.1-201ENST00000407015 1384 ntBASIC4.34□□□□□ -1.71
HOXA1P49639 IRAK1BP1-204ENST00000607739 1387 ntTSL 2 BASIC4.34□□□□□ -1.71
HOXA1P49639 RUFY3-201ENST00000226328 4233 ntTSL 1 (best) BASIC4.34□□□□□ -1.71
HOXA1P49639 AL133268.1-201ENST00000405676 1401 ntBASIC4.34□□□□□ -1.71
HOXA1P49639 SCARNA15-201ENST00000607520 4325 ntBASIC4.34□□□□□ -1.71
HOXA1P49639 CFHR3-201ENST00000367425 1645 ntAPPRIS P1 TSL 1 (best) BASIC4.34□□□□□ -1.71
HOXA1P49639 IL6ST-212ENST00000522633 1878 ntTSL 1 (best) BASIC4.34□□□□□ -1.71
HOXA1P49639 AP001803.2-201ENST00000532274 2034 ntTSL 2 BASIC4.34□□□□□ -1.71
HOXA1P49639 AC107021.2-201ENST00000567714 2095 ntBASIC4.34□□□□□ -1.71
HOXA1P49639 LINC01187-201ENST00000506431 2314 ntTSL 5 BASIC4.34□□□□□ -1.72
HOXA1P49639 PLEKHG7-203ENST00000638590 3267 ntAPPRIS P1 TSL 2 BASIC4.34□□□□□ -1.72
HOXA1P49639 AIG1-208ENST00000494282 3393 ntTSL 1 (best) BASIC4.34□□□□□ -1.72
HOXA1P49639 USP26-203ENST00000511190 3665 ntAPPRIS P1 TSL 2 BASIC4.34□□□□□ -1.72
HOXA1P49639 FILIP1-201ENST00000237172 4580 ntAPPRIS P1 TSL 1 (best) BASIC4.33□□□□□ -1.72
HOXA1P49639 PATL1-201ENST00000300146 4072 ntAPPRIS P1 TSL 1 (best) BASIC4.33□□□□□ -1.72
HOXA1P49639 ERVW-1-201ENST00000493463 2925 ntAPPRIS P1 BASIC4.33□□□□□ -1.72
HOXA1P49639 ANKRD20A10P-201ENST00000457591 1515 ntBASIC4.33□□□□□ -1.72
HOXA1P49639 AL354733.2-209ENST00000589233 1434 ntTSL 2 BASIC4.33□□□□□ -1.72
HOXA1P49639 MTND4P10-201ENST00000446199 1363 ntBASIC4.33□□□□□ -1.72
HOXA1P49639 MTND4P8-201ENST00000514997 1362 ntBASIC4.33□□□□□ -1.72
HOXA1P49639 OR9G4-201ENST00000302957 984 ntBASIC4.33□□□□□ -1.72
HOXA1P49639 MIR375-201ENST00000362103 64 ntBASIC4.33□□□□□ -1.72
HOXA1P49639 RNU6-666P-201ENST00000363499 107 ntBASIC4.33□□□□□ -1.72
HOXA1P49639 RNU6-353P-201ENST00000364266 108 ntBASIC4.33□□□□□ -1.72
HOXA1P49639 RNU4-68P-201ENST00000364314 141 ntBASIC4.33□□□□□ -1.72
HOXA1P49639 RN7SKP6-201ENST00000364795 319 ntBASIC4.33□□□□□ -1.72
HOXA1P49639 RNU6-224P-201ENST00000384055 107 ntBASIC4.33□□□□□ -1.72
HOXA1P49639 RNU6-185P-201ENST00000384421 107 ntBASIC4.33□□□□□ -1.72
HOXA1P49639 AC004386.1-201ENST00000393214 761 ntBASIC4.33□□□□□ -1.72
HOXA1P49639 HMGB1P20-201ENST00000402555 677 ntBASIC4.33□□□□□ -1.72
HOXA1P49639 RPS3AP2-201ENST00000407190 754 ntBASIC4.33□□□□□ -1.72
HOXA1P49639 LINC00396-201ENST00000411690 439 ntTSL 3 BASIC4.33□□□□□ -1.72
HOXA1P49639 RPL21P108-201ENST00000413857 481 ntBASIC4.33□□□□□ -1.72
HOXA1P49639 GPC5-IT1-201ENST00000416664 658 ntTSL 3 BASIC4.33□□□□□ -1.72
HOXA1P49639 LINC00845-201ENST00000417931 696 ntTSL 2 BASIC4.33□□□□□ -1.72
HOXA1P49639 RPS3AP37-201ENST00000419176 745 ntBASIC4.33□□□□□ -1.72
HOXA1P49639 ITGA9-AS1-202ENST00000420870 581 ntTSL 4 BASIC4.33□□□□□ -1.72
HOXA1P49639 AL162430.2-201ENST00000422306 435 ntTSL 3 BASIC4.33□□□□□ -1.72
HOXA1P49639 SDCBP-203ENST00000424270 1277 ntAPPRIS ALT1 TSL 2 BASIC4.33□□□□□ -1.72
HOXA1P49639 AL109761.1-201ENST00000428689 422 ntTSL 3 BASIC4.33□□□□□ -1.72
HOXA1P49639 AC022022.1-201ENST00000430304 178 ntBASIC4.33□□□□□ -1.72
HOXA1P49639 RPL12P17-201ENST00000432393 498 ntBASIC4.33□□□□□ -1.72
HOXA1P49639 OR6D1P-201ENST00000436165 939 ntBASIC4.33□□□□□ -1.72
HOXA1P49639 MTCO2P20-201ENST00000437339 673 ntBASIC4.33□□□□□ -1.72
HOXA1P49639 AC006019.3-201ENST00000446335 698 ntTSL 3 BASIC4.33□□□□□ -1.72
HOXA1P49639 CD200R1L-202ENST00000448932 750 ntAPPRIS ALT2 TSL 5 BASIC4.33□□□□□ -1.72
HOXA1P49639 TPTE2P6-203ENST00000450973 649 ntTSL 5 BASIC4.33□□□□□ -1.72
HOXA1P49639 PPIA-203ENST00000451562 544 ntTSL 2 BASIC4.33□□□□□ -1.72
HOXA1P49639 AC092832.2-201ENST00000456621 389 ntTSL 2 BASIC4.33□□□□□ -1.72
HOXA1P49639 RPL7P32-201ENST00000457119 744 ntBASIC4.33□□□□□ -1.72
HOXA1P49639 AC007000.3-201ENST00000459742 617 ntTSL 3 BASIC4.33□□□□□ -1.72
HOXA1P49639 AC005410.1-202ENST00000460347 485 ntBASIC4.33□□□□□ -1.72
HOXA1P49639 RPL7P48-201ENST00000461513 746 ntBASIC4.33□□□□□ -1.72
HOXA1P49639 NDUFA5P9-201ENST00000472609 340 ntBASIC4.33□□□□□ -1.72
HOXA1P49639 TFEC-208ENST00000484212 1245 ntTSL 2 BASIC4.33□□□□□ -1.72
HOXA1P49639 RN7SL170P-201ENST00000487098 295 ntBASIC4.33□□□□□ -1.72
HOXA1P49639 AC093001.1-201ENST00000489011 551 ntTSL 4 BASIC4.33□□□□□ -1.72
Retrieved 100 of 98,524 protein–RNA pairs in 89.3 ms