Protein–RNA interactions for Protein: P12109

COL6A1, Collagen alpha-1(VI) chain, humanhuman

Predictions only

Length 1,028 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A1P12109 AC243654.3-201ENST00000617427 735 ntTSL 5 BASIC6.17□□□□□ -1.42
COL6A1P12109 AL353662.3-201ENST00000625131 237 ntBASIC6.17□□□□□ -1.42
COL6A1P12109 AC092192.1-201ENST00000633154 1018 ntBASIC6.17□□□□□ -1.42
COL6A1P12109 C16orf87-202ENST00000394806 6640 ntTSL 1 (best) BASIC6.17□□□□□ -1.42
COL6A1P12109 RAD54B-201ENST00000297592 1879 ntTSL 2 BASIC6.17□□□□□ -1.42
COL6A1P12109 ESCO1-204ENST00000622333 1850 ntTSL 2 BASIC6.17□□□□□ -1.42
COL6A1P12109 SELL-201ENST00000236147 2436 ntAPPRIS P1 TSL 1 (best) BASIC6.17□□□□□ -1.42
COL6A1P12109 KMO-202ENST00000366557 4888 ntAPPRIS ALT2 TSL 5 BASIC6.17□□□□□ -1.42
COL6A1P12109 FAM26D-201ENST00000368596 1353 ntAPPRIS P1 TSL 5 BASIC6.17□□□□□ -1.42
COL6A1P12109 DDX3Y-201ENST00000336079 4445 ntAPPRIS P1 TSL 1 (best) BASIC6.17□□□□□ -1.42
COL6A1P12109 LRRC8B-201ENST00000330947 7593 ntAPPRIS P1 TSL 5 BASIC6.17□□□□□ -1.42
COL6A1P12109 RAB30-216ENST00000612684 9783 ntAPPRIS P1 TSL 3 BASIC6.16□□□□□ -1.42
COL6A1P12109 C1orf140-202ENST00000439004 4340 ntTSL 1 (best) BASIC6.16□□□□□ -1.42
COL6A1P12109 TTC39C-201ENST00000304621 2304 ntAPPRIS P3 TSL 1 (best) BASIC6.16□□□□□ -1.42
COL6A1P12109 AL353784.1-201ENST00000422842 2300 ntTSL 1 (best) BASIC6.16□□□□□ -1.42
COL6A1P12109 DNHD1-201ENST00000254579 14862 ntAPPRIS P1 TSL 5 BASIC6.16□□□□□ -1.42
COL6A1P12109 SPARCL1-202ENST00000418378 2994 ntAPPRIS P1 TSL 5 BASIC6.16□□□□□ -1.42
COL6A1P12109 MRC1-201ENST00000569591 5198 ntAPPRIS P1 TSL 1 (best) BASIC6.16□□□□□ -1.42
COL6A1P12109 NDST4-204ENST00000613194 3439 ntTSL 5 BASIC6.16□□□□□ -1.42
COL6A1P12109 LINC01422-201ENST00000434868 6043 ntTSL 1 (best) BASIC6.16□□□□□ -1.42
COL6A1P12109 WDCP-201ENST00000295148 3817 ntAPPRIS P3 TSL 2 BASIC6.16□□□□□ -1.42
COL6A1P12109 OR5AS1-201ENST00000313555 975 ntAPPRIS P1 BASIC6.16□□□□□ -1.42
COL6A1P12109 EFCAB9-201ENST00000398186 702 ntAPPRIS P1 TSL 3 BASIC6.16□□□□□ -1.42
COL6A1P12109 MTCO1P56-201ENST00000401674 224 ntBASIC6.16□□□□□ -1.42
COL6A1P12109 RN7SKP222-201ENST00000410651 315 ntBASIC6.16□□□□□ -1.42
COL6A1P12109 NPM1P40-201ENST00000412758 733 ntBASIC6.16□□□□□ -1.42
COL6A1P12109 USP9YP9-201ENST00000429406 715 ntBASIC6.16□□□□□ -1.42
COL6A1P12109 KCNIP1-205ENST00000434108 726 ntTSL 1 (best) BASIC6.16□□□□□ -1.42
COL6A1P12109 AL391097.2-201ENST00000435057 485 ntTSL 3 BASIC6.16□□□□□ -1.42
COL6A1P12109 AC076966.1-201ENST00000435560 351 ntTSL 1 (best) BASIC6.16□□□□□ -1.42
COL6A1P12109 MTCYBP39-201ENST00000437562 491 ntBASIC6.16□□□□□ -1.42
COL6A1P12109 ZBTB40-IT1-201ENST00000438551 273 ntTSL 3 BASIC6.16□□□□□ -1.42
COL6A1P12109 ELOCP8-201ENST00000439309 332 ntBASIC6.16□□□□□ -1.42
COL6A1P12109 LINC00280-201ENST00000439525 448 ntTSL 2 BASIC6.16□□□□□ -1.42
COL6A1P12109 ELOCP15-201ENST00000442090 332 ntBASIC6.16□□□□□ -1.42
COL6A1P12109 AL354794.1-201ENST00000442103 516 ntTSL 3 BASIC6.16□□□□□ -1.42
COL6A1P12109 AC016903.1-201ENST00000444017 588 ntTSL 4 BASIC6.16□□□□□ -1.42
COL6A1P12109 AL392089.1-202ENST00000444793 449 ntTSL 2 BASIC6.16□□□□□ -1.42
COL6A1P12109 TPTE2P6-202ENST00000445572 1007 ntBASIC6.16□□□□□ -1.42
COL6A1P12109 AL591623.2-201ENST00000449978 222 ntBASIC6.16□□□□□ -1.42
COL6A1P12109 NECAP1P2-201ENST00000455668 727 ntBASIC6.16□□□□□ -1.42
COL6A1P12109 AC083795.2-201ENST00000510034 610 ntTSL 3 BASIC6.16□□□□□ -1.42
COL6A1P12109 VCAN-AS1-201ENST00000512090 424 ntTSL 3 BASIC6.16□□□□□ -1.42
COL6A1P12109 HMGB1P40-201ENST00000525121 540 ntBASIC6.16□□□□□ -1.42
COL6A1P12109 PIH1D2-206ENST00000528775 1025 ntTSL 5 BASIC6.16□□□□□ -1.42
COL6A1P12109 AC090424.1-201ENST00000535243 736 ntBASIC6.16□□□□□ -1.42
COL6A1P12109 AC092490.3-201ENST00000545370 572 ntBASIC6.16□□□□□ -1.42
COL6A1P12109 LINC02303-204ENST00000555442 889 ntTSL 3 BASIC6.16□□□□□ -1.42
COL6A1P12109 AC127381.1-201ENST00000555979 939 ntBASIC6.16□□□□□ -1.42
COL6A1P12109 AF107885.2-202ENST00000557653 448 ntTSL 5 BASIC6.16□□□□□ -1.42
COL6A1P12109 RPL10P14-201ENST00000565265 298 ntBASIC6.16□□□□□ -1.42
COL6A1P12109 ACTR3BP3-201ENST00000565577 979 ntBASIC6.16□□□□□ -1.42
COL6A1P12109 AL157402.2-201ENST00000566394 416 ntTSL 3 BASIC6.16□□□□□ -1.42
COL6A1P12109 MIR4311-201ENST00000580794 100 ntBASIC6.16□□□□□ -1.42
COL6A1P12109 LINC00511-212ENST00000581183 657 ntTSL 3 BASIC6.16□□□□□ -1.42
COL6A1P12109 DYNAP-202ENST00000585973 1102 ntAPPRIS ALT2 TSL 3 BASIC6.16□□□□□ -1.42
COL6A1P12109 AC011447.4-201ENST00000587562 111 ntBASIC6.16□□□□□ -1.42
COL6A1P12109 AC005757.1-201ENST00000591432 472 ntTSL 4 BASIC6.16□□□□□ -1.42
COL6A1P12109 AC021749.1-201ENST00000604322 607 ntBASIC6.16□□□□□ -1.42
COL6A1P12109 AC026786.2-201ENST00000606110 392 ntTSL 3 BASIC6.16□□□□□ -1.42
COL6A1P12109 AP000254.1-201ENST00000609934 520 ntBASIC6.16□□□□□ -1.42
COL6A1P12109 AC122133.1-201ENST00000613964 233 ntBASIC6.16□□□□□ -1.42
COL6A1P12109 AC116165.2-201ENST00000616705 206 ntBASIC6.16□□□□□ -1.42
COL6A1P12109 AL031658.2-201ENST00000616850 651 ntBASIC6.16□□□□□ -1.42
COL6A1P12109 AC091965.5-201ENST00000624785 342 ntBASIC6.16□□□□□ -1.42
COL6A1P12109 LINC01002-236ENST00000634022 378 ntTSL 5 BASIC6.16□□□□□ -1.42
COL6A1P12109 AC011912.1-201ENST00000623483 5819 ntTSL 1 (best) BASIC6.16□□□□□ -1.42
COL6A1P12109 INSL4-201ENST00000239316 1952 ntAPPRIS P1 TSL 1 (best) BASIC6.16□□□□□ -1.42
COL6A1P12109 RXFP1-211ENST00000613319 3771 ntTSL 1 (best) BASIC6.16□□□□□ -1.42
COL6A1P12109 DAOA-211ENST00000618629 1368 ntAPPRIS P3 TSL 5 BASIC6.16□□□□□ -1.42
COL6A1P12109 AJ009632.2-208ENST00000635525 4123 ntTSL 5 BASIC6.16□□□□□ -1.42
COL6A1P12109 TMEM257-201ENST00000408967 2441 ntAPPRIS P1 BASIC6.16□□□□□ -1.42
COL6A1P12109 DAOA-201ENST00000329625 1433 ntAPPRIS ALT2 TSL 1 (best) BASIC6.16□□□□□ -1.42
COL6A1P12109 MTRNR2L13-201ENST00000604093 1445 ntAPPRIS P1 BASIC6.16□□□□□ -1.42
COL6A1P12109 PAN3-202ENST00000399613 4940 ntAPPRIS ALT2 TSL 5 BASIC6.15□□□□□ -1.42
COL6A1P12109 ZCCHC6-201ENST00000277141 5724 ntTSL 2 BASIC6.15□□□□□ -1.42
COL6A1P12109 TRPM6-202ENST00000360774 8425 ntTSL 1 (best) BASIC6.15□□□□□ -1.42
COL6A1P12109 SLCO1B7-201ENST00000421593 1923 ntAPPRIS P1 TSL 1 (best) BASIC6.15□□□□□ -1.42
COL6A1P12109 AC232271.1-201ENST00000602455 2715 ntBASIC6.15□□□□□ -1.42
COL6A1P12109 AP004607.3-201ENST00000530354 3915 ntBASIC6.15□□□□□ -1.42
COL6A1P12109 AC079298.1-201ENST00000625026 1619 ntBASIC6.15□□□□□ -1.42
COL6A1P12109 RAB30-214ENST00000534141 3746 ntTSL 1 (best) BASIC6.15□□□□□ -1.42
COL6A1P12109 IL5-201ENST00000231454 816 ntAPPRIS P1 TSL 1 (best) BASIC6.15□□□□□ -1.42
COL6A1P12109 SNORA17.1-201ENST00000362945 126 ntBASIC6.15□□□□□ -1.42
COL6A1P12109 RNA5SP87-201ENST00000384155 118 ntBASIC6.15□□□□□ -1.42
COL6A1P12109 RNU6-932P-201ENST00000391108 106 ntBASIC6.15□□□□□ -1.42
COL6A1P12109 AC098820.3-201ENST00000414135 976 ntTSL 3 BASIC6.15□□□□□ -1.42
COL6A1P12109 RPS7P9-201ENST00000414704 586 ntBASIC6.15□□□□□ -1.42
COL6A1P12109 AC107057.1-201ENST00000425763 319 ntTSL 3 BASIC6.15□□□□□ -1.42
COL6A1P12109 AC129850.1-201ENST00000436203 508 ntBASIC6.15□□□□□ -1.42
COL6A1P12109 AL162385.2-201ENST00000437864 285 ntTSL 3 BASIC6.15□□□□□ -1.42
COL6A1P12109 FGF7P5-201ENST00000441829 291 ntBASIC6.15□□□□□ -1.42
COL6A1P12109 AC011287.2-201ENST00000456809 842 ntTSL 5 BASIC6.15□□□□□ -1.42
COL6A1P12109 ATP5J-207ENST00000457143 589 ntTSL 2 BASIC6.15□□□□□ -1.42
COL6A1P12109 AL445687.2-201ENST00000458156 728 ntBASIC6.15□□□□□ -1.42
COL6A1P12109 AC068633.1-202ENST00000476460 458 ntTSL 2 BASIC6.15□□□□□ -1.42
COL6A1P12109 AC008517.1-201ENST00000502383 585 ntTSL 4 BASIC6.15□□□□□ -1.42
COL6A1P12109 AC109349.1-201ENST00000503299 758 ntTSL 1 (best) BASIC6.15□□□□□ -1.42
COL6A1P12109 HHIP-AS1-203ENST00000512359 646 ntTSL 3 BASIC6.15□□□□□ -1.42
COL6A1P12109 RNU6-1308P-201ENST00000516817 103 ntBASIC6.15□□□□□ -1.42
Retrieved 100 of 98,524 protein–RNA pairs in 109.1 ms