Protein–RNA interactions for Protein: P09016

HOXD4, Homeobox protein Hox-D4, humanhuman

Predicted RBP Predictions only

Length 255 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD4P09016 PRG4-202ENST00000367483 4921 ntTSL 5 BASIC4.4□□□□□ -1.71
HOXD4P09016 PIGN-242ENST00000640145 4505 ntAPPRIS P1 TSL 5 BASIC4.4□□□□□ -1.71
HOXD4P09016 AP001002.1-201ENST00000625148 1513 ntBASIC4.4□□□□□ -1.71
HOXD4P09016 MUC12-202ENST00000379442 16737 ntAPPRIS ALT2 TSL 5 BASIC4.4□□□□□ -1.71
HOXD4P09016 UBE4A-202ENST00000431736 6061 ntAPPRIS P3 TSL 1 (best) BASIC4.4□□□□□ -1.71
HOXD4P09016 PIK3C3-201ENST00000262039 9443 ntAPPRIS P1 TSL 1 (best) BASIC4.4□□□□□ -1.71
HOXD4P09016 CD200R1-204ENST00000471858 3679 ntAPPRIS ALT2 TSL 1 (best) BASIC4.4□□□□□ -1.71
HOXD4P09016 INPP4B-215ENST00000509777 4334 ntTSL 5 BASIC4.4□□□□□ -1.71
HOXD4P09016 C3orf58-202ENST00000441925 3260 ntTSL 2 BASIC4.4□□□□□ -1.71
HOXD4P09016 TRIM77-201ENST00000398290 1353 ntAPPRIS P1 TSL 5 BASIC4.4□□□□□ -1.71
HOXD4P09016 BAALC-AS1-201ENST00000499522 1353 ntTSL 5 BASIC4.4□□□□□ -1.71
HOXD4P09016 DDX18P3-201ENST00000404856 2007 ntBASIC4.39□□□□□ -1.71
HOXD4P09016 AHNAK-202ENST00000378024 18787 ntAPPRIS P3 TSL 2 BASIC4.39□□□□□ -1.71
HOXD4P09016 CNKSR2-202ENST00000379510 5315 ntAPPRIS P1 TSL 1 (best) BASIC4.39□□□□□ -1.71
HOXD4P09016 AC093775.1-201ENST00000624154 1868 ntBASIC4.39□□□□□ -1.71
HOXD4P09016 FAM111B-206ENST00000620384 3405 ntAPPRIS P1 TSL 2 BASIC4.39□□□□□ -1.71
HOXD4P09016 EIF4EBP2-201ENST00000373218 7257 ntAPPRIS P1 TSL 1 (best) BASIC4.39□□□□□ -1.71
HOXD4P09016 STK31-205ENST00000433467 3085 ntTSL 2 BASIC4.39□□□□□ -1.71
HOXD4P09016 RNASE2-201ENST00000304625 755 ntAPPRIS P1 TSL 1 (best) BASIC4.39□□□□□ -1.71
HOXD4P09016 OR5AN1-201ENST00000313940 1037 ntAPPRIS P1 BASIC4.39□□□□□ -1.71
HOXD4P09016 AC126755.2-208ENST00000327792 462 ntBASIC4.39□□□□□ -1.71
HOXD4P09016 AC138969.1-213ENST00000331436 462 ntBASIC4.39□□□□□ -1.71
HOXD4P09016 RNA5-8SP7-201ENST00000363443 155 ntBASIC4.39□□□□□ -1.71
HOXD4P09016 OR2M5-201ENST00000366476 939 ntAPPRIS P1 BASIC4.39□□□□□ -1.71
HOXD4P09016 R3HCC1L-204ENST00000370586 941 ntTSL 3 BASIC4.39□□□□□ -1.71
HOXD4P09016 LY6G5C-210ENST00000383237 674 ntAPPRIS P2 TSL 1 (best) BASIC4.39□□□□□ -1.71
HOXD4P09016 LAP3P1-201ENST00000403648 294 ntBASIC4.39□□□□□ -1.71
HOXD4P09016 AMZ2P2-201ENST00000406819 1057 ntBASIC4.39□□□□□ -1.71
HOXD4P09016 SNORA11-201ENST00000408789 128 ntBASIC4.39□□□□□ -1.71
HOXD4P09016 AL121885.1-201ENST00000417957 451 ntTSL 3 BASIC4.39□□□□□ -1.71
HOXD4P09016 AC093414.1-201ENST00000434712 514 ntBASIC4.39□□□□□ -1.71
HOXD4P09016 LINC02013-201ENST00000438156 526 ntTSL 2 BASIC4.39□□□□□ -1.71
HOXD4P09016 SCAND3P1-201ENST00000439854 1060 ntBASIC4.39□□□□□ -1.71
HOXD4P09016 AL450023.3-201ENST00000440592 271 ntBASIC4.39□□□□□ -1.71
HOXD4P09016 TXNP2-201ENST00000443918 295 ntBASIC4.39□□□□□ -1.71
HOXD4P09016 CYCSP42-201ENST00000450823 238 ntBASIC4.39□□□□□ -1.71
HOXD4P09016 AC005008.1-201ENST00000456151 612 ntBASIC4.39□□□□□ -1.71
HOXD4P09016 ALDH7A1P3-201ENST00000492517 345 ntBASIC4.39□□□□□ -1.71
HOXD4P09016 KRTAP5-14P-201ENST00000502328 121 ntBASIC4.39□□□□□ -1.71
HOXD4P09016 AC093720.1-201ENST00000505681 714 ntBASIC4.39□□□□□ -1.71
HOXD4P09016 STMN1P2-201ENST00000508435 439 ntBASIC4.39□□□□□ -1.71
HOXD4P09016 AC079921.1-201ENST00000509449 946 ntTSL 3 BASIC4.39□□□□□ -1.71
HOXD4P09016 AC005699.1-205ENST00000510639 427 ntTSL 2 BASIC4.39□□□□□ -1.71
HOXD4P09016 RN7SKP276-201ENST00000516242 268 ntBASIC4.39□□□□□ -1.71
HOXD4P09016 TRAPPC2-208ENST00000519885 561 ntTSL 3 BASIC4.39□□□□□ -1.71
HOXD4P09016 BUD31P1-201ENST00000521828 359 ntBASIC4.39□□□□□ -1.71
HOXD4P09016 AC104036.1-201ENST00000523550 611 ntTSL 3 BASIC4.39□□□□□ -1.71
HOXD4P09016 AC084880.2-201ENST00000536009 501 ntTSL 3 BASIC4.39□□□□□ -1.71
HOXD4P09016 AL121852.1-201ENST00000554665 430 ntTSL 3 BASIC4.39□□□□□ -1.71
HOXD4P09016 AC021517.1-203ENST00000590257 421 ntTSL 3 BASIC4.39□□□□□ -1.71
HOXD4P09016 UBA2-208ENST00000592791 910 ntTSL 2 BASIC4.39□□□□□ -1.71
HOXD4P09016 ZNF682-204ENST00000593468 581 ntTSL 4 BASIC4.39□□□□□ -1.71
HOXD4P09016 BNIP3P39-201ENST00000601077 554 ntBASIC4.39□□□□□ -1.71
HOXD4P09016 AC068790.7-201ENST00000602347 528 ntBASIC4.39□□□□□ -1.71
HOXD4P09016 AL135786.2-201ENST00000608422 615 ntBASIC4.39□□□□□ -1.71
HOXD4P09016 AC074276.2-201ENST00000619891 348 ntBASIC4.39□□□□□ -1.71
HOXD4P09016 AC006249.1-201ENST00000621223 471 ntBASIC4.39□□□□□ -1.71
HOXD4P09016 VPS35P1-201ENST00000563400 1518 ntBASIC4.39□□□□□ -1.71
HOXD4P09016 ZNF382-204ENST00000439428 2742 ntAPPRIS ALT2 TSL 1 (best) BASIC4.39□□□□□ -1.71
HOXD4P09016 OR2J3-201ENST00000377169 1325 ntAPPRIS P1 BASIC4.39□□□□□ -1.71
HOXD4P09016 FTX-210ENST00000603037 8347 ntTSL 5 BASIC4.39□□□□□ -1.71
HOXD4P09016 INTS6-220ENST00000497989 3022 ntTSL 2 BASIC4.39□□□□□ -1.71
HOXD4P09016 WEE2-201ENST00000397541 3061 ntAPPRIS P1 TSL 1 (best) BASIC4.39□□□□□ -1.71
HOXD4P09016 ZNF700-202ENST00000482090 3113 ntAPPRIS ALT2 TSL 2 BASIC4.39□□□□□ -1.71
HOXD4P09016 AC087565.3-202ENST00000642085 1603 ntBASIC4.39□□□□□ -1.71
HOXD4P09016 ZNF845-201ENST00000458035 4311 ntAPPRIS P1 TSL 4 BASIC4.38□□□□□ -1.71
HOXD4P09016 NCLP2-201ENST00000416078 1462 ntBASIC4.38□□□□□ -1.71
HOXD4P09016 KCNJ16-211ENST00000615244 4190 ntAPPRIS P1 TSL 4 BASIC4.38□□□□□ -1.71
HOXD4P09016 LINC00550-201ENST00000629293 3434 ntTSL 1 (best) BASIC4.38□□□□□ -1.71
HOXD4P09016 SMC2-AS1-201ENST00000603487 7020 ntTSL 2 BASIC4.38□□□□□ -1.71
HOXD4P09016 CAST-201ENST00000309190 4282 ntAPPRIS P3 TSL 1 (best) BASIC4.38□□□□□ -1.71
HOXD4P09016 MAPK10-286ENST00000641208 8747 ntBASIC4.38□□□□□ -1.71
HOXD4P09016 SNORA73.1-201ENST00000363107 205 ntBASIC4.38□□□□□ -1.71
HOXD4P09016 ASXL1-203ENST00000375689 812 ntTSL 5 BASIC4.38□□□□□ -1.71
HOXD4P09016 KLRC3-202ENST00000396439 1028 ntAPPRIS ALT2 TSL 5 BASIC4.38□□□□□ -1.71
HOXD4P09016 LRRC37BP1-201ENST00000398851 714 ntBASIC4.38□□□□□ -1.71
HOXD4P09016 AC099566.1-204ENST00000413825 943 ntTSL 3 BASIC4.38□□□□□ -1.71
HOXD4P09016 SEC63P1-201ENST00000425785 1258 ntBASIC4.38□□□□□ -1.71
HOXD4P09016 ISM1-AS1-201ENST00000431407 652 ntTSL 1 (best) BASIC4.38□□□□□ -1.71
HOXD4P09016 ARL4AP3-201ENST00000441452 574 ntBASIC4.38□□□□□ -1.71
HOXD4P09016 LINC01704-202ENST00000442358 649 ntTSL 3 BASIC4.38□□□□□ -1.71
HOXD4P09016 AC009963.2-201ENST00000453431 138 ntBASIC4.38□□□□□ -1.71
HOXD4P09016 MTND2P30-201ENST00000456663 382 ntBASIC4.38□□□□□ -1.71
HOXD4P09016 RPL23AP56-201ENST00000460778 453 ntBASIC4.38□□□□□ -1.71
HOXD4P09016 AC010326.1-201ENST00000462726 602 ntBASIC4.38□□□□□ -1.71
HOXD4P09016 AC010469.1-201ENST00000463864 576 ntBASIC4.38□□□□□ -1.71
HOXD4P09016 AC108751.2-201ENST00000469993 231 ntBASIC4.38□□□□□ -1.71
HOXD4P09016 NDUFB2-213ENST00000476470 482 ntTSL 5 BASIC4.38□□□□□ -1.71
HOXD4P09016 LINC01206-203ENST00000476815 482 ntTSL 3 BASIC4.38□□□□□ -1.71
HOXD4P09016 AC015908.1-201ENST00000478739 476 ntBASIC4.38□□□□□ -1.71
HOXD4P09016 F11-AS1-201ENST00000505103 1178 ntTSL 1 (best) BASIC4.38□□□□□ -1.71
HOXD4P09016 LINC02270-201ENST00000505386 610 ntTSL 1 (best) BASIC4.38□□□□□ -1.71
HOXD4P09016 GIN1-203ENST00000508629 1040 ntTSL 1 (best) BASIC4.38□□□□□ -1.71
HOXD4P09016 LINC01218-201ENST00000515150 481 ntTSL 3 BASIC4.38□□□□□ -1.71
HOXD4P09016 LINC00500-201ENST00000515860 539 ntTSL 4 BASIC4.38□□□□□ -1.71
HOXD4P09016 AF117829.1-210ENST00000523859 696 ntTSL 3 BASIC4.38□□□□□ -1.71
HOXD4P09016 CASP1-206ENST00000526568 1061 ntTSL 1 (best) BASIC4.38□□□□□ -1.71
HOXD4P09016 AC068775.2-201ENST00000539033 998 ntAPPRIS P1 TSL 1 (best) BASIC4.38□□□□□ -1.71
HOXD4P09016 TOMM20P2-201ENST00000540082 421 ntBASIC4.38□□□□□ -1.71
HOXD4P09016 AC074029.2-201ENST00000551045 634 ntBASIC4.38□□□□□ -1.71
Retrieved 100 of 98,524 protein–RNA pairs in 79.7 ms