Protein–RNA interactions for Protein: O15551

CLDN3, Claudin-3, humanhuman

Predictions only

Length 220 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLDN3O15551 USP29-202ENST00000598197 3284 ntAPPRIS P1 BASIC4.94□□□□□ -1.62
CLDN3O15551 AC092821.1-201ENST00000640129 4180 ntAPPRIS P1 TSL 5 BASIC4.94□□□□□ -1.62
CLDN3O15551 DPY19L2P2-203ENST00000435536 1858 ntBASIC4.94□□□□□ -1.62
CLDN3O15551 KCNH7-205ENST00000621889 1893 ntTSL 5 BASIC4.94□□□□□ -1.62
CLDN3O15551 KATNAL1-201ENST00000380615 7551 ntAPPRIS P1 TSL 1 (best) BASIC4.94□□□□□ -1.62
CLDN3O15551 WDFY3-201ENST00000295888 14247 ntAPPRIS P1 TSL 1 (best) BASIC4.94□□□□□ -1.62
CLDN3O15551 VPS13C-201ENST00000249837 13300 ntAPPRIS P3 TSL 1 (best) BASIC4.94□□□□□ -1.62
CLDN3O15551 AC107027.3-201ENST00000565095 3473 ntBASIC4.94□□□□□ -1.62
CLDN3O15551 EMSY-204ENST00000524490 4015 ntTSL 2 BASIC4.94□□□□□ -1.62
CLDN3O15551 MAPK10-320ENST00000641462 6696 ntBASIC4.94□□□□□ -1.62
CLDN3O15551 LAMTOR3-201ENST00000226522 1220 ntTSL 3 BASIC4.94□□□□□ -1.62
CLDN3O15551 RNA5SP443-201ENST00000363083 132 ntBASIC4.94□□□□□ -1.62
CLDN3O15551 RNU6-670P-201ENST00000364312 104 ntBASIC4.94□□□□□ -1.62
CLDN3O15551 AC012358.3-203ENST00000366287 1110 ntTSL 3 BASIC4.94□□□□□ -1.62
CLDN3O15551 ARL4A-204ENST00000396664 1144 ntAPPRIS P1 TSL 1 (best) BASIC4.94□□□□□ -1.62
CLDN3O15551 LINC02542-201ENST00000418567 822 ntTSL 5 BASIC4.94□□□□□ -1.62
CLDN3O15551 RAD23BP1-201ENST00000421404 1227 ntBASIC4.94□□□□□ -1.62
CLDN3O15551 OR6K4P-201ENST00000423179 955 ntBASIC4.94□□□□□ -1.62
CLDN3O15551 RPL7AP25-201ENST00000423357 805 ntBASIC4.94□□□□□ -1.62
CLDN3O15551 AP001324.1-201ENST00000428553 399 ntBASIC4.94□□□□□ -1.62
CLDN3O15551 TPTE2P1-204ENST00000435256 593 ntBASIC4.94□□□□□ -1.62
CLDN3O15551 MTCYBP29-201ENST00000436327 1006 ntBASIC4.94□□□□□ -1.62
CLDN3O15551 TMX2P1-201ENST00000436507 708 ntBASIC4.94□□□□□ -1.62
CLDN3O15551 FHP1-201ENST00000442741 703 ntBASIC4.94□□□□□ -1.62
CLDN3O15551 Z99127.1-202ENST00000448686 526 ntTSL 2 BASIC4.94□□□□□ -1.62
CLDN3O15551 RPS27L-205ENST00000462430 681 ntTSL 2 BASIC4.94□□□□□ -1.62
CLDN3O15551 AC104831.1-201ENST00000470024 444 ntTSL 3 BASIC4.94□□□□□ -1.62
CLDN3O15551 OR52Z1-201ENST00000510471 897 ntAPPRIS P1 BASIC4.94□□□□□ -1.62
CLDN3O15551 OR4V1P-201ENST00000525394 1140 ntBASIC4.94□□□□□ -1.62
CLDN3O15551 LINC02301-201ENST00000553760 773 ntTSL 3 BASIC4.94□□□□□ -1.62
CLDN3O15551 AC112693.1-201ENST00000555297 682 ntTSL 3 BASIC4.94□□□□□ -1.62
CLDN3O15551 AL359237.1-202ENST00000556168 487 ntTSL 5 BASIC4.94□□□□□ -1.62
CLDN3O15551 AC009268.1-201ENST00000561352 1203 ntBASIC4.94□□□□□ -1.62
CLDN3O15551 MIR5096-201ENST00000583713 70 ntBASIC4.94□□□□□ -1.62
CLDN3O15551 HMGB2P1-201ENST00000591146 634 ntBASIC4.94□□□□□ -1.62
CLDN3O15551 AC023762.1-201ENST00000603280 584 ntBASIC4.94□□□□□ -1.62
CLDN3O15551 AC115286.1-201ENST00000604298 434 ntBASIC4.94□□□□□ -1.62
CLDN3O15551 AC008966.2-201ENST00000606157 453 ntBASIC4.94□□□□□ -1.62
CLDN3O15551 LINC00458-206ENST00000607494 849 ntTSL 3 BASIC4.94□□□□□ -1.62
CLDN3O15551 LINC02266-201ENST00000610239 1151 ntTSL 3 BASIC4.94□□□□□ -1.62
CLDN3O15551 LGALS13-204ENST00000621475 494 ntAPPRIS ALT2 TSL 5 BASIC4.94□□□□□ -1.62
CLDN3O15551 TEX41-256ENST00000626411 368 ntTSL 5 BASIC4.94□□□□□ -1.62
CLDN3O15551 VN2R3P-201ENST00000422626 1412 ntBASIC4.94□□□□□ -1.62
CLDN3O15551 NPY5R-202ENST00000506953 1418 ntAPPRIS P1 BASIC4.94□□□□□ -1.62
CLDN3O15551 MTRNR2L6-201ENST00000604952 1447 ntAPPRIS P1 BASIC4.94□□□□□ -1.62
CLDN3O15551 CUL3-216ENST00000617432 1426 ntTSL 5 BASIC4.94□□□□□ -1.62
CLDN3O15551 LINC00622-201ENST00000562811 1570 ntBASIC4.94□□□□□ -1.62
CLDN3O15551 DCDC1-211ENST00000597505 5352 ntAPPRIS ALT2 TSL 5 BASIC4.94□□□□□ -1.62
CLDN3O15551 CPHL1P-201ENST00000461341 3407 ntBASIC4.94□□□□□ -1.62
CLDN3O15551 RXFP1-204ENST00000423548 3930 ntTSL 2 BASIC4.93□□□□□ -1.62
CLDN3O15551 ADCY10-202ENST00000367851 5051 ntAPPRIS P1 TSL 1 (best) BASIC4.93□□□□□ -1.62
CLDN3O15551 EXOC1-202ENST00000349598 3248 ntAPPRIS ALT1 TSL 2 BASIC4.93□□□□□ -1.62
CLDN3O15551 RNU6-819P-201ENST00000364116 107 ntBASIC4.93□□□□□ -1.62
CLDN3O15551 MIR921-201ENST00000401133 56 ntBASIC4.93□□□□□ -1.62
CLDN3O15551 AL607077.1-201ENST00000401718 499 ntBASIC4.93□□□□□ -1.62
CLDN3O15551 FCF1P5-201ENST00000406490 482 ntBASIC4.93□□□□□ -1.62
CLDN3O15551 RN7SKP97-201ENST00000410966 333 ntBASIC4.93□□□□□ -1.62
CLDN3O15551 Y_RNA.625-201ENST00000411256 107 ntBASIC4.93□□□□□ -1.62
CLDN3O15551 FAR2P2-201ENST00000413041 594 ntBASIC4.93□□□□□ -1.62
CLDN3O15551 Z74021.1-201ENST00000423610 407 ntBASIC4.93□□□□□ -1.62
CLDN3O15551 FAR2P4-202ENST00000425399 584 ntBASIC4.93□□□□□ -1.62
CLDN3O15551 NABP1-205ENST00000425611 1878 ntAPPRIS P1 TSL 1 (best) BASIC4.93□□□□□ -1.62
CLDN3O15551 AL451070.1-201ENST00000430143 439 ntTSL 5 BASIC4.93□□□□□ -1.62
CLDN3O15551 AC076966.1-201ENST00000435560 351 ntTSL 1 (best) BASIC4.93□□□□□ -1.62
CLDN3O15551 AC062032.1-201ENST00000436245 355 ntTSL 5 BASIC4.93□□□□□ -1.62
CLDN3O15551 AL121974.1-201ENST00000437859 377 ntTSL 3 BASIC4.93□□□□□ -1.62
CLDN3O15551 TMEM212-AS1-201ENST00000449106 427 ntTSL 3 BASIC4.93□□□□□ -1.62
CLDN3O15551 CYCSP42-201ENST00000450823 238 ntBASIC4.93□□□□□ -1.62
CLDN3O15551 TMSB4X-204ENST00000451311 628 ntAPPRIS P1 TSL 1 (best) BASIC4.93□□□□□ -1.62
CLDN3O15551 AC012671.1-201ENST00000451912 203 ntBASIC4.93□□□□□ -1.62
CLDN3O15551 CYP4F62P-203ENST00000455215 552 ntTSL 4 BASIC4.93□□□□□ -1.62
CLDN3O15551 MTND3P6-201ENST00000485242 339 ntBASIC4.93□□□□□ -1.62
CLDN3O15551 PANCR-201ENST00000503456 493 ntTSL 5 BASIC4.93□□□□□ -1.62
CLDN3O15551 ATP6V1G1P6-201ENST00000504007 334 ntBASIC4.93□□□□□ -1.62
CLDN3O15551 TMEM108-AS1-201ENST00000504993 705 ntTSL 3 BASIC4.93□□□□□ -1.62
CLDN3O15551 AC097534.1-201ENST00000507803 521 ntTSL 4 BASIC4.93□□□□□ -1.62
CLDN3O15551 LINC02231-201ENST00000510459 447 ntTSL 3 BASIC4.93□□□□□ -1.62
CLDN3O15551 LINC02382-201ENST00000515840 614 ntTSL 1 (best) BASIC4.93□□□□□ -1.62
CLDN3O15551 AC067904.2-201ENST00000517322 1283 ntBASIC4.93□□□□□ -1.62
CLDN3O15551 AC064807.2-201ENST00000521188 672 ntTSL 3 BASIC4.93□□□□□ -1.62
CLDN3O15551 NPM1P35-201ENST00000533043 868 ntBASIC4.93□□□□□ -1.62
CLDN3O15551 AL591770.1-201ENST00000554475 1131 ntTSL 3 BASIC4.93□□□□□ -1.62
CLDN3O15551 AL163932.1-201ENST00000555776 542 ntTSL 4 BASIC4.93□□□□□ -1.62
CLDN3O15551 C15orf41-212ENST00000567389 2618 ntTSL 1 (best) BASIC4.93□□□□□ -1.62
CLDN3O15551 AC091178.1-203ENST00000584586 279 ntBASIC4.93□□□□□ -1.62
CLDN3O15551 MAPKAPK5-AS1-205ENST00000590479 543 ntTSL 2 BASIC4.93□□□□□ -1.62
CLDN3O15551 ZNF682-204ENST00000593468 581 ntTSL 4 BASIC4.93□□□□□ -1.62
CLDN3O15551 BPIFA4P-203ENST00000603168 689 ntBASIC4.93□□□□□ -1.62
CLDN3O15551 MTCO2P22-201ENST00000603246 681 ntBASIC4.93□□□□□ -1.62
CLDN3O15551 AP000569.1-201ENST00000607953 591 ntTSL 2 BASIC4.93□□□□□ -1.62
CLDN3O15551 AC006971.1-201ENST00000407916 4486 ntBASIC4.93□□□□□ -1.62
CLDN3O15551 SDCBP-213ENST00000630925 2076 ntTSL 5 BASIC4.93□□□□□ -1.62
CLDN3O15551 AC139713.2-215ENST00000641428 5037 ntBASIC4.93□□□□□ -1.62
CLDN3O15551 KIAA0586-202ENST00000354386 5226 ntAPPRIS ALT2 TSL 2 BASIC4.93□□□□□ -1.62
CLDN3O15551 NFIB-211ENST00000606230 2311 ntTSL 5 BASIC4.92□□□□□ -1.62
CLDN3O15551 AL360270.1-201ENST00000440689 2359 ntTSL 2 BASIC4.92□□□□□ -1.62
CLDN3O15551 KLF12-201ENST00000377669 10637 ntAPPRIS P1 TSL 1 (best) BASIC4.92□□□□□ -1.62
CLDN3O15551 OMG-201ENST00000247271 1947 ntAPPRIS P1 TSL 1 (best) BASIC4.92□□□□□ -1.62
CLDN3O15551 SCN2A-201ENST00000283256 8660 ntAPPRIS P5 TSL 1 (best) BASIC4.92□□□□□ -1.62
CLDN3O15551 TRAV21-201ENST00000390449 343 ntAPPRIS P1 BASIC4.92□□□□□ -1.62
Retrieved 100 of 98,524 protein–RNA pairs in 94 ms