Protein–RNA interactions for Protein: Q8NEF3

CCDC112, Coiled-coil domain-containing protein 112, humanhuman

Predictions only

Length 446 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC112Q8NEF3 ADAM7-201ENST00000175238 3367 ntAPPRIS P2 TSL 1 (best) BASIC4.9□□□□□ -1.63
CCDC112Q8NEF3 BNIP3L-202ENST00000518611 1352 ntTSL 2 BASIC4.9□□□□□ -1.63
CCDC112Q8NEF3 SLC15A5-201ENST00000344941 2923 ntAPPRIS P1 TSL 5 BASIC4.9□□□□□ -1.63
CCDC112Q8NEF3 LINC02458-201ENST00000500381 2941 ntTSL 2 BASIC4.9□□□□□ -1.63
CCDC112Q8NEF3 FAM208A-202ENST00000431842 7119 ntTSL 1 (best) BASIC4.89□□□□□ -1.63
CCDC112Q8NEF3 NCOA1-202ENST00000348332 6895 ntAPPRIS P4 TSL 1 (best) BASIC4.89□□□□□ -1.63
CCDC112Q8NEF3 UTRN-204ENST00000367545 12339 ntAPPRIS P1 TSL 5 BASIC4.89□□□□□ -1.63
CCDC112Q8NEF3 CEP295-201ENST00000325212 8057 ntAPPRIS P2 TSL 2 BASIC4.89□□□□□ -1.63
CCDC112Q8NEF3 GBA3-205ENST00000511446 2018 ntTSL 2 BASIC4.89□□□□□ -1.63
CCDC112Q8NEF3 UBE4A-201ENST00000252108 6103 ntAPPRIS ALT1 TSL 1 (best) BASIC4.89□□□□□ -1.63
CCDC112Q8NEF3 CRYZ-203ENST00000370871 1292 ntTSL 1 (best) BASIC4.89□□□□□ -1.63
CCDC112Q8NEF3 SH3BGR-203ENST00000380634 816 ntTSL 5 BASIC4.89□□□□□ -1.63
CCDC112Q8NEF3 MIR192-201ENST00000384915 110 ntBASIC4.89□□□□□ -1.63
CCDC112Q8NEF3 DEFB115-201ENST00000400552 267 ntAPPRIS P1 TSL 1 (best) BASIC4.89□□□□□ -1.63
CCDC112Q8NEF3 ICA1L-206ENST00000418208 602 ntTSL 4 BASIC4.89□□□□□ -1.63
CCDC112Q8NEF3 MTND2P11-201ENST00000423638 648 ntBASIC4.89□□□□□ -1.63
CCDC112Q8NEF3 RPSAP41-201ENST00000439695 860 ntBASIC4.89□□□□□ -1.63
CCDC112Q8NEF3 AC105271.1-201ENST00000442876 497 ntTSL 3 BASIC4.89□□□□□ -1.63
CCDC112Q8NEF3 CEACAMP9-201ENST00000442990 513 ntBASIC4.89□□□□□ -1.63
CCDC112Q8NEF3 THAP12P8-201ENST00000447914 2115 ntBASIC4.89□□□□□ -1.63
CCDC112Q8NEF3 AC105233.1-201ENST00000498840 781 ntBASIC4.89□□□□□ -1.63
CCDC112Q8NEF3 AC099509.1-201ENST00000502437 652 ntTSL 2 BASIC4.89□□□□□ -1.63
CCDC112Q8NEF3 LINC02161-201ENST00000503691 420 ntTSL 3 BASIC4.89□□□□□ -1.63
CCDC112Q8NEF3 LINC02039-201ENST00000507428 566 ntTSL 4 BASIC4.89□□□□□ -1.63
CCDC112Q8NEF3 AL133166.1-205ENST00000548306 569 ntTSL 4 BASIC4.89□□□□□ -1.63
CCDC112Q8NEF3 LINC02313-201ENST00000553330 550 ntTSL 2 BASIC4.89□□□□□ -1.63
CCDC112Q8NEF3 LINC02170-201ENST00000561519 555 ntTSL 4 BASIC4.89□□□□□ -1.63
CCDC112Q8NEF3 AC013565.1-201ENST00000565938 597 ntTSL 2 BASIC4.89□□□□□ -1.63
CCDC112Q8NEF3 AC009039.1-201ENST00000568711 471 ntTSL 4 BASIC4.89□□□□□ -1.63
CCDC112Q8NEF3 RN7SL652P-201ENST00000577769 300 ntBASIC4.89□□□□□ -1.63
CCDC112Q8NEF3 MIR4270-201ENST00000581799 70 ntBASIC4.89□□□□□ -1.63
CCDC112Q8NEF3 MIR432-201ENST00000606207 94 ntBASIC4.89□□□□□ -1.63
CCDC112Q8NEF3 AC013727.1-201ENST00000618581 839 ntTSL 5 BASIC4.89□□□□□ -1.63
CCDC112Q8NEF3 LINC00622-201ENST00000562811 1570 ntBASIC4.89□□□□□ -1.63
CCDC112Q8NEF3 ESCO1-204ENST00000622333 1850 ntTSL 2 BASIC4.89□□□□□ -1.63
CCDC112Q8NEF3 RASGRP1-209ENST00000559830 1910 ntTSL 1 (best) BASIC4.89□□□□□ -1.63
CCDC112Q8NEF3 ZNF962P-201ENST00000443465 3140 ntBASIC4.89□□□□□ -1.63
CCDC112Q8NEF3 KATNA1-202ENST00000335647 1684 ntAPPRIS P1 TSL 1 (best) BASIC4.89□□□□□ -1.63
CCDC112Q8NEF3 FKTN-201ENST00000223528 7364 ntAPPRIS P1 TSL 1 (best) BASIC4.89□□□□□ -1.63
CCDC112Q8NEF3 ART3-202ENST00000349321 1528 ntAPPRIS P3 TSL 1 (best) BASIC4.88□□□□□ -1.63
CCDC112Q8NEF3 EPS8-209ENST00000542903 1858 ntTSL 2 BASIC4.88□□□□□ -1.63
CCDC112Q8NEF3 AC019197.1-201ENST00000638199 3611 ntTSL 5 BASIC4.88□□□□□ -1.63
CCDC112Q8NEF3 AC064875.1-201ENST00000425974 1942 ntTSL 2 BASIC4.88□□□□□ -1.63
CCDC112Q8NEF3 PLS1-211ENST00000497002 2258 ntAPPRIS P1 TSL 1 (best) BASIC4.88□□□□□ -1.63
CCDC112Q8NEF3 ASAH1-265ENST00000637922 2297 ntTSL 5 BASIC4.88□□□□□ -1.63
CCDC112Q8NEF3 SLC35F5-213ENST00000638402 1554 ntTSL 5 BASIC4.88□□□□□ -1.63
CCDC112Q8NEF3 PTRH2-203ENST00000470557 4114 ntAPPRIS P3 BASIC4.88□□□□□ -1.63
CCDC112Q8NEF3 ZSCAN4-202ENST00000612521 1979 ntAPPRIS P1 TSL 5 BASIC4.88□□□□□ -1.63
CCDC112Q8NEF3 RNA5SP388-201ENST00000362584 119 ntBASIC4.88□□□□□ -1.63
CCDC112Q8NEF3 SF3B1-202ENST00000409915 600 ntTSL 2 BASIC4.88□□□□□ -1.63
CCDC112Q8NEF3 RNU2-50P-201ENST00000410494 143 ntBASIC4.88□□□□□ -1.63
CCDC112Q8NEF3 RNA5SP306-201ENST00000411087 107 ntBASIC4.88□□□□□ -1.63
CCDC112Q8NEF3 LINC01423-201ENST00000414189 608 ntTSL 3 BASIC4.88□□□□□ -1.63
CCDC112Q8NEF3 LINC01661-201ENST00000415910 708 ntTSL 3 BASIC4.88□□□□□ -1.63
CCDC112Q8NEF3 AC140479.3-201ENST00000418944 1126 ntBASIC4.88□□□□□ -1.63
CCDC112Q8NEF3 LINC01341-201ENST00000419361 552 ntTSL 2 BASIC4.88□□□□□ -1.63
CCDC112Q8NEF3 AL161621.1-201ENST00000444796 340 ntTSL 3 BASIC4.88□□□□□ -1.63
CCDC112Q8NEF3 LINC02096-201ENST00000445035 953 ntTSL 5 BASIC4.88□□□□□ -1.63
CCDC112Q8NEF3 TAB3-AS2-201ENST00000445240 292 ntTSL 5 BASIC4.88□□□□□ -1.63
CCDC112Q8NEF3 ABCF2P2-201ENST00000450549 296 ntBASIC4.88□□□□□ -1.63
CCDC112Q8NEF3 AC133473.1-201ENST00000455173 299 ntBASIC4.88□□□□□ -1.63
CCDC112Q8NEF3 AL133477.1-201ENST00000457472 514 ntBASIC4.88□□□□□ -1.63
CCDC112Q8NEF3 RN7SL738P-201ENST00000470264 297 ntBASIC4.88□□□□□ -1.63
CCDC112Q8NEF3 STK26-205ENST00000496850 1186 ntTSL 1 (best) BASIC4.88□□□□□ -1.63
CCDC112Q8NEF3 AC021006.3-201ENST00000530771 192 ntBASIC4.88□□□□□ -1.63
CCDC112Q8NEF3 AC009117.1-201ENST00000563948 554 ntBASIC4.88□□□□□ -1.63
CCDC112Q8NEF3 AC090844.2-203ENST00000582263 632 ntTSL 5 BASIC4.88□□□□□ -1.63
CCDC112Q8NEF3 AC093484.5-201ENST00000585048 304 ntTSL 3 BASIC4.88□□□□□ -1.63
CCDC112Q8NEF3 AC007193.1-201ENST00000599645 448 ntTSL 5 BASIC4.88□□□□□ -1.63
CCDC112Q8NEF3 AL031320.1-201ENST00000604177 357 ntBASIC4.88□□□□□ -1.63
CCDC112Q8NEF3 Z98200.1-201ENST00000607298 470 ntBASIC4.88□□□□□ -1.63
CCDC112Q8NEF3 AL161616.1-201ENST00000611867 286 ntBASIC4.88□□□□□ -1.63
CCDC112Q8NEF3 AC087385.3-201ENST00000620477 187 ntBASIC4.88□□□□□ -1.63
CCDC112Q8NEF3 TEX41-256ENST00000626411 368 ntTSL 5 BASIC4.88□□□□□ -1.63
CCDC112Q8NEF3 UBE4A-202ENST00000431736 6061 ntAPPRIS P3 TSL 1 (best) BASIC4.88□□□□□ -1.63
CCDC112Q8NEF3 SGO1-AS1-203ENST00000455626 2041 ntTSL 1 (best) BASIC4.88□□□□□ -1.63
CCDC112Q8NEF3 SCGB2A2-202ENST00000525380 1305 ntTSL 2 BASIC4.88□□□□□ -1.63
CCDC112Q8NEF3 SLAIN1-202ENST00000314070 2118 ntAPPRIS ALT2 TSL 2 BASIC4.88□□□□□ -1.63
CCDC112Q8NEF3 AL583808.2-201ENST00000418078 1382 ntTSL 5 BASIC4.88□□□□□ -1.63
CCDC112Q8NEF3 ZNF630-207ENST00000616492 2220 ntAPPRIS ALT2 TSL 5 BASIC4.88□□□□□ -1.63
CCDC112Q8NEF3 RC3H2-203ENST00000373670 9248 ntAPPRIS P1 TSL 5 BASIC4.87□□□□□ -1.63
CCDC112Q8NEF3 GABRA1-220ENST00000638159 4088 ntTSL 5 BASIC4.87□□□□□ -1.63
CCDC112Q8NEF3 MGP-201ENST00000228938 694 ntTSL 3 BASIC4.87□□□□□ -1.63
CCDC112Q8NEF3 RNASE2-201ENST00000304625 755 ntAPPRIS P1 TSL 1 (best) BASIC4.87□□□□□ -1.63
CCDC112Q8NEF3 OR5AN1-201ENST00000313940 1037 ntAPPRIS P1 BASIC4.87□□□□□ -1.63
CCDC112Q8NEF3 CREM-201ENST00000337656 900 ntAPPRIS ALT1 TSL 5 BASIC4.87□□□□□ -1.63
CCDC112Q8NEF3 MANSC4-201ENST00000381273 1023 ntAPPRIS P1 TSL 5 BASIC4.87□□□□□ -1.63
CCDC112Q8NEF3 SRY-201ENST00000383070 845 ntAPPRIS P1 BASIC4.87□□□□□ -1.63
CCDC112Q8NEF3 SDHCP2-201ENST00000398565 501 ntBASIC4.87□□□□□ -1.63
CCDC112Q8NEF3 ZNF603P-201ENST00000405613 487 ntBASIC4.87□□□□□ -1.63
CCDC112Q8NEF3 AC016397.1-201ENST00000412463 242 ntBASIC4.87□□□□□ -1.63
CCDC112Q8NEF3 AL603962.1-201ENST00000413148 436 ntTSL 5 BASIC4.87□□□□□ -1.63
CCDC112Q8NEF3 AC096559.1-201ENST00000414086 399 ntTSL 2 BASIC4.87□□□□□ -1.63
CCDC112Q8NEF3 C6orf52-203ENST00000426700 493 ntAPPRIS P2 TSL 2 BASIC4.87□□□□□ -1.63
CCDC112Q8NEF3 AC008072.1-201ENST00000434254 824 ntBASIC4.87□□□□□ -1.63
CCDC112Q8NEF3 SLC8A1-AS1-205ENST00000435515 497 ntTSL 3 BASIC4.87□□□□□ -1.63
CCDC112Q8NEF3 AL138878.2-201ENST00000440581 1241 ntBASIC4.87□□□□□ -1.63
CCDC112Q8NEF3 AC112498.1-201ENST00000444401 332 ntBASIC4.87□□□□□ -1.63
CCDC112Q8NEF3 AP001596.1-202ENST00000452460 644 ntTSL 3 BASIC4.87□□□□□ -1.63
CCDC112Q8NEF3 FO393408.1-201ENST00000458577 582 ntTSL 5 BASIC4.87□□□□□ -1.63
Retrieved 100 of 98,524 protein–RNA pairs in 102 ms