Protein–RNA interactions for Protein: Q53GG5

PDLIM3, PDZ and LIM domain protein 3, humanhuman

Predicted RBP Predictions only

Length 364 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM3Q53GG5 AC092164.1-202ENST00000428036 486 ntTSL 3 BASIC4.4□□□□□ -1.71
PDLIM3Q53GG5 TNKS2-AS1-201ENST00000432246 609 ntTSL 2 BASIC4.4□□□□□ -1.71
PDLIM3Q53GG5 YWHAZP2-201ENST00000440317 728 ntBASIC4.4□□□□□ -1.71
PDLIM3Q53GG5 AC097499.1-201ENST00000444277 208 ntBASIC4.4□□□□□ -1.71
PDLIM3Q53GG5 RPL7P48-201ENST00000461513 746 ntBASIC4.4□□□□□ -1.71
PDLIM3Q53GG5 AC021660.1-201ENST00000465006 554 ntBASIC4.4□□□□□ -1.71
PDLIM3Q53GG5 AC087672.1-201ENST00000479876 766 ntBASIC4.4□□□□□ -1.71
PDLIM3Q53GG5 IGBP1P4-201ENST00000503202 879 ntBASIC4.4□□□□□ -1.71
PDLIM3Q53GG5 SUMO2P5-201ENST00000506790 245 ntBASIC4.4□□□□□ -1.71
PDLIM3Q53GG5 LINC02231-201ENST00000510459 447 ntTSL 3 BASIC4.4□□□□□ -1.71
PDLIM3Q53GG5 RPS3A-210ENST00000512690 845 ntTSL 3 BASIC4.4□□□□□ -1.71
PDLIM3Q53GG5 RNU6-347P-201ENST00000516658 105 ntBASIC4.4□□□□□ -1.71
PDLIM3Q53GG5 AC022360.1-201ENST00000521058 340 ntBASIC4.4□□□□□ -1.71
PDLIM3Q53GG5 AC092709.1-201ENST00000521355 1045 ntBASIC4.4□□□□□ -1.71
PDLIM3Q53GG5 AC138701.1-201ENST00000524329 714 ntBASIC4.4□□□□□ -1.71
PDLIM3Q53GG5 AP003066.2-201ENST00000529375 555 ntBASIC4.4□□□□□ -1.71
PDLIM3Q53GG5 TRDN-204ENST00000542443 1294 ntTSL 1 (best) BASIC4.4□□□□□ -1.71
PDLIM3Q53GG5 NR1H4-204ENST00000546380 565 ntTSL 3 BASIC4.4□□□□□ -1.71
PDLIM3Q53GG5 AC026401.1-201ENST00000549756 530 ntTSL 3 BASIC4.4□□□□□ -1.71
PDLIM3Q53GG5 CYB5AP5-201ENST00000549779 389 ntBASIC4.4□□□□□ -1.71
PDLIM3Q53GG5 LINC02416-201ENST00000550019 540 ntTSL 4 BASIC4.4□□□□□ -1.71
PDLIM3Q53GG5 AC063949.1-201ENST00000552900 865 ntBASIC4.4□□□□□ -1.71
PDLIM3Q53GG5 OR11H3P-201ENST00000554547 982 ntBASIC4.4□□□□□ -1.71
PDLIM3Q53GG5 AL163932.1-201ENST00000555776 542 ntTSL 4 BASIC4.4□□□□□ -1.71
PDLIM3Q53GG5 AL161757.4-204ENST00000557136 834 ntTSL 3 BASIC4.4□□□□□ -1.71
PDLIM3Q53GG5 AC090515.3-201ENST00000560431 315 ntBASIC4.4□□□□□ -1.71
PDLIM3Q53GG5 AGGF1P9-201ENST00000561884 913 ntBASIC4.4□□□□□ -1.71
PDLIM3Q53GG5 AC025917.1-201ENST00000562062 612 ntTSL 3 BASIC4.4□□□□□ -1.71
PDLIM3Q53GG5 DPPA2P4-201ENST00000563717 878 ntBASIC4.4□□□□□ -1.71
PDLIM3Q53GG5 AC134669.2-201ENST00000578584 1008 ntAPPRIS P1 TSL 2 BASIC4.4□□□□□ -1.71
PDLIM3Q53GG5 AC022884.3-201ENST00000579571 248 ntBASIC4.4□□□□□ -1.71
PDLIM3Q53GG5 AC011492.1-201ENST00000600023 315 ntBASIC4.4□□□□□ -1.71
PDLIM3Q53GG5 AC018618.2-201ENST00000604770 446 ntBASIC4.4□□□□□ -1.71
PDLIM3Q53GG5 AC021851.1-201ENST00000608537 1082 ntBASIC4.4□□□□□ -1.71
PDLIM3Q53GG5 AC008759.3-201ENST00000613300 508 ntBASIC4.4□□□□□ -1.71
PDLIM3Q53GG5 AL512427.1-201ENST00000618593 349 ntBASIC4.4□□□□□ -1.71
PDLIM3Q53GG5 AC135068.5-201ENST00000624197 983 ntBASIC4.4□□□□□ -1.71
PDLIM3Q53GG5 SATB1-AS1-227ENST00000625533 743 ntTSL 5 BASIC4.4□□□□□ -1.71
PDLIM3Q53GG5 AC099654.9-201ENST00000637055 678 ntBASIC4.4□□□□□ -1.71
PDLIM3Q53GG5 ASAH1-263ENST00000637872 886 ntTSL 5 BASIC4.4□□□□□ -1.71
PDLIM3Q53GG5 AC132825.7-201ENST00000638744 335 ntBASIC4.4□□□□□ -1.71
PDLIM3Q53GG5 METTL8-219ENST00000640734 726 ntTSL 2 BASIC4.4□□□□□ -1.71
PDLIM3Q53GG5 CFH-206ENST00000630130 1658 ntTSL 1 (best) BASIC4.4□□□□□ -1.71
PDLIM3Q53GG5 Z95327.2-201ENST00000414579 1873 ntBASIC4.4□□□□□ -1.71
PDLIM3Q53GG5 WDPCP-202ENST00000398544 2063 ntAPPRIS ALT2 TSL 1 (best) BASIC4.4□□□□□ -1.71
PDLIM3Q53GG5 LINC01109-201ENST00000603837 3081 ntBASIC4.4□□□□□ -1.71
PDLIM3Q53GG5 AL450345.1-202ENST00000605741 3881 ntBASIC4.4□□□□□ -1.71
PDLIM3Q53GG5 HEMGN-202ENST00000616898 2305 ntAPPRIS P1 TSL 1 (best) BASIC4.4□□□□□ -1.71
PDLIM3Q53GG5 DCDC1-211ENST00000597505 5352 ntAPPRIS ALT2 TSL 5 BASIC4.4□□□□□ -1.71
PDLIM3Q53GG5 STK31-201ENST00000354639 3596 ntTSL 1 (best) BASIC4.4□□□□□ -1.71
PDLIM3Q53GG5 PTBP3-207ENST00000458258 7995 ntTSL 1 (best) BASIC4.4□□□□□ -1.71
PDLIM3Q53GG5 ERC2-201ENST00000288221 6138 ntAPPRIS P1 TSL 1 (best) BASIC4.4□□□□□ -1.71
PDLIM3Q53GG5 INPP4B-220ENST00000513000 8831 ntAPPRIS P1 TSL 1 (best) BASIC4.4□□□□□ -1.71
PDLIM3Q53GG5 GAPT-202ENST00000396776 3016 ntAPPRIS P1 TSL 2 BASIC4.4□□□□□ -1.71
PDLIM3Q53GG5 OR2L5-201ENST00000355281 2429 ntAPPRIS P1 BASIC4.4□□□□□ -1.71
PDLIM3Q53GG5 CHRM2-203ENST00000445907 5918 ntAPPRIS P1 TSL 1 (best) BASIC4.39□□□□□ -1.71
PDLIM3Q53GG5 C4orf17-201ENST00000326581 1636 ntAPPRIS P2 TSL 1 (best) BASIC4.39□□□□□ -1.71
PDLIM3Q53GG5 CD86-204ENST00000469710 1604 ntTSL 2 BASIC4.39□□□□□ -1.71
PDLIM3Q53GG5 WDR35-202ENST00000345530 6960 ntAPPRIS ALT1 TSL 1 (best) BASIC4.39□□□□□ -1.71
PDLIM3Q53GG5 MAP3K2-201ENST00000344908 2135 ntAPPRIS P1 TSL 1 (best) BASIC4.39□□□□□ -1.71
PDLIM3Q53GG5 SRRM1-202ENST00000374389 3110 ntAPPRIS ALT2 TSL 5 BASIC4.39□□□□□ -1.71
PDLIM3Q53GG5 RN7SKP74-201ENST00000362849 309 ntBASIC4.39□□□□□ -1.71
PDLIM3Q53GG5 RNU1-32P-201ENST00000363937 159 ntBASIC4.39□□□□□ -1.71
PDLIM3Q53GG5 SEC61A2-203ENST00000379017 600 ntTSL 5 BASIC4.39□□□□□ -1.71
PDLIM3Q53GG5 RNU6ATAC18P-201ENST00000408413 101 ntBASIC4.39□□□□□ -1.71
PDLIM3Q53GG5 RPSAP35-201ENST00000413753 818 ntBASIC4.39□□□□□ -1.71
PDLIM3Q53GG5 RPS4XP16-201ENST00000427198 791 ntBASIC4.39□□□□□ -1.71
PDLIM3Q53GG5 AC007403.1-201ENST00000427579 567 ntTSL 4 BASIC4.39□□□□□ -1.71
PDLIM3Q53GG5 AL360081.1-201ENST00000428299 555 ntBASIC4.39□□□□□ -1.71
PDLIM3Q53GG5 AC124944.2-201ENST00000429866 1242 ntBASIC4.39□□□□□ -1.71
PDLIM3Q53GG5 AC016712.1-201ENST00000431088 378 ntBASIC4.39□□□□□ -1.71
PDLIM3Q53GG5 RPL12P17-201ENST00000432393 498 ntBASIC4.39□□□□□ -1.71
PDLIM3Q53GG5 AL136140.1-201ENST00000436113 473 ntTSL 3 BASIC4.39□□□□□ -1.71
PDLIM3Q53GG5 AP001596.1-202ENST00000452460 644 ntTSL 3 BASIC4.39□□□□□ -1.71
PDLIM3Q53GG5 RNU7-27P-201ENST00000459281 62 ntBASIC4.39□□□□□ -1.71
PDLIM3Q53GG5 RN7SL51P-201ENST00000468230 285 ntBASIC4.39□□□□□ -1.71
PDLIM3Q53GG5 HMGN1P9-201ENST00000515212 298 ntBASIC4.39□□□□□ -1.71
PDLIM3Q53GG5 AC010476.1-201ENST00000519111 851 ntBASIC4.39□□□□□ -1.71
PDLIM3Q53GG5 AC084706.1-201ENST00000521879 558 ntTSL 2 BASIC4.39□□□□□ -1.71
PDLIM3Q53GG5 AC131254.2-201ENST00000521908 550 ntTSL 3 BASIC4.39□□□□□ -1.71
PDLIM3Q53GG5 AC111149.1-201ENST00000522560 343 ntTSL 3 BASIC4.39□□□□□ -1.71
PDLIM3Q53GG5 AF117829.1-210ENST00000523859 696 ntTSL 3 BASIC4.39□□□□□ -1.71
PDLIM3Q53GG5 LINC02327-205ENST00000550990 472 ntTSL 3 BASIC4.39□□□□□ -1.71
PDLIM3Q53GG5 DNAL1-206ENST00000554871 632 ntTSL 1 (best) BASIC4.39□□□□□ -1.71
PDLIM3Q53GG5 OR4C13-201ENST00000555099 1029 ntAPPRIS P1 BASIC4.39□□□□□ -1.71
PDLIM3Q53GG5 AL049875.1-202ENST00000556620 857 ntTSL 3 BASIC4.39□□□□□ -1.71
PDLIM3Q53GG5 AL359238.1-201ENST00000557770 744 ntTSL 3 BASIC4.39□□□□□ -1.71
PDLIM3Q53GG5 NPM1P47-201ENST00000560843 856 ntBASIC4.39□□□□□ -1.71
PDLIM3Q53GG5 LINC02185-202ENST00000576797 568 ntTSL 3 BASIC4.39□□□□□ -1.71
PDLIM3Q53GG5 AL121989.1-201ENST00000585888 746 ntTSL 3 BASIC4.39□□□□□ -1.71
PDLIM3Q53GG5 AC008507.2-201ENST00000588402 1176 ntBASIC4.39□□□□□ -1.71
PDLIM3Q53GG5 SMIM24-204ENST00000591708 660 ntAPPRIS ALT2 TSL 2 BASIC4.39□□□□□ -1.71
PDLIM3Q53GG5 AC112503.1-201ENST00000608436 391 ntBASIC4.39□□□□□ -1.71
PDLIM3Q53GG5 AL392048.1-201ENST00000613946 534 ntBASIC4.39□□□□□ -1.71
PDLIM3Q53GG5 AC012594.1-272ENST00000625790 710 ntTSL 5 BASIC4.39□□□□□ -1.71
PDLIM3Q53GG5 AC013437.2-201ENST00000639587 677 ntBASIC4.39□□□□□ -1.71
PDLIM3Q53GG5 DSPP-202ENST00000399271 4331 ntAPPRIS P1 TSL 5 BASIC4.39□□□□□ -1.71
PDLIM3Q53GG5 C3orf67-AS1-202ENST00000482372 2203 ntTSL 2 BASIC4.39□□□□□ -1.71
PDLIM3Q53GG5 SNX10-202ENST00000396376 2491 ntAPPRIS P2 TSL 1 (best) BASIC4.39□□□□□ -1.71
PDLIM3Q53GG5 POF1B-201ENST00000262753 3941 ntAPPRIS P3 TSL 1 (best) BASIC4.39□□□□□ -1.71
Retrieved 100 of 98,524 protein–RNA pairs in 71.3 ms