Protein–RNA interactions for Protein: Q53GD3

SLC44A4, Choline transporter-like protein 4, humanhuman

Predictions only

Length 710 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SLC44A4Q53GD3 AP003485.2-201ENST00000623636 610 ntBASIC5.6□□□□□ -1.51
SLC44A4Q53GD3 UGP2-231ENST00000627474 264 ntTSL 5 BASIC5.6□□□□□ -1.51
SLC44A4Q53GD3 BX649567.1-201ENST00000642071 1134 ntBASIC5.6□□□□□ -1.51
SLC44A4Q53GD3 DCLK1-204ENST00000379893 4612 ntTSL 2 BASIC5.6□□□□□ -1.51
SLC44A4Q53GD3 KIAA1456-203ENST00000524591 9587 ntAPPRIS P1 TSL 5 BASIC5.6□□□□□ -1.51
SLC44A4Q53GD3 AC093155.3-201ENST00000370548 2013 ntAPPRIS P1 TSL 2 BASIC5.6□□□□□ -1.51
SLC44A4Q53GD3 PSG1-204ENST00000436291 2047 ntAPPRIS ALT2 TSL 1 (best) BASIC5.6□□□□□ -1.51
SLC44A4Q53GD3 PPP1R9A-206ENST00000433360 5369 ntTSL 1 (best) BASIC5.6□□□□□ -1.51
SLC44A4Q53GD3 PIAS2-204ENST00000585916 11075 ntAPPRIS P1 TSL 1 (best) BASIC5.6□□□□□ -1.51
SLC44A4Q53GD3 ART3-203ENST00000355810 1561 ntAPPRIS ALT2 TSL 1 (best) BASIC5.59□□□□□ -1.51
SLC44A4Q53GD3 MATR3-228ENST00000620916 3134 ntTSL 5 BASIC5.59□□□□□ -1.51
SLC44A4Q53GD3 AC012618.3-205ENST00000637896 1496 ntBASIC5.59□□□□□ -1.51
SLC44A4Q53GD3 PAK3-205ENST00000417227 2196 ntTSL 1 (best) BASIC5.59□□□□□ -1.51
SLC44A4Q53GD3 ZNF492-201ENST00000456783 4245 ntAPPRIS P1 TSL 1 (best) BASIC5.59□□□□□ -1.51
SLC44A4Q53GD3 MAPRE2-202ENST00000413393 4173 ntAPPRIS ALT1 TSL 5 BASIC5.59□□□□□ -1.51
SLC44A4Q53GD3 ZNF571-201ENST00000328550 4113 ntAPPRIS P1 TSL 1 (best) BASIC5.59□□□□□ -1.51
SLC44A4Q53GD3 AC092376.2-201ENST00000622621 4116 ntBASIC5.59□□□□□ -1.51
SLC44A4Q53GD3 EDA2R-202ENST00000374719 3418 ntAPPRIS P3 TSL 1 (best) BASIC5.59□□□□□ -1.51
SLC44A4Q53GD3 SKP1-202ENST00000353411 9474 ntAPPRIS P4 TSL 1 (best) BASIC5.59□□□□□ -1.51
SLC44A4Q53GD3 WAC-209ENST00000428935 1320 ntTSL 2 BASIC5.59□□□□□ -1.51
SLC44A4Q53GD3 VIT-206ENST00000457137 1344 ntTSL 1 (best) BASIC5.59□□□□□ -1.51
SLC44A4Q53GD3 CAPZA3-201ENST00000317658 1087 ntAPPRIS P1 BASIC5.59□□□□□ -1.51
SLC44A4Q53GD3 ANKRD36P1-201ENST00000344424 659 ntBASIC5.59□□□□□ -1.51
SLC44A4Q53GD3 RNU6-98P-201ENST00000384173 107 ntBASIC5.59□□□□□ -1.51
SLC44A4Q53GD3 RNU6-729P-201ENST00000384399 107 ntBASIC5.59□□□□□ -1.51
SLC44A4Q53GD3 CLEC7A-206ENST00000396484 1000 ntTSL 1 (best) BASIC5.59□□□□□ -1.51
SLC44A4Q53GD3 AP000357.1-201ENST00000409926 1165 ntBASIC5.59□□□□□ -1.51
SLC44A4Q53GD3 LSM5-205ENST00000409952 687 ntTSL 4 BASIC5.59□□□□□ -1.51
SLC44A4Q53GD3 LINC00342-201ENST00000412393 654 ntTSL 3 BASIC5.59□□□□□ -1.51
SLC44A4Q53GD3 FAR2P2-201ENST00000413041 594 ntBASIC5.59□□□□□ -1.51
SLC44A4Q53GD3 RPL26P29-201ENST00000415623 438 ntBASIC5.59□□□□□ -1.51
SLC44A4Q53GD3 HSFY4P-201ENST00000415994 1181 ntBASIC5.59□□□□□ -1.51
SLC44A4Q53GD3 RPL22P18-201ENST00000417197 377 ntBASIC5.59□□□□□ -1.51
SLC44A4Q53GD3 LINC01065-201ENST00000417989 577 ntTSL 3 BASIC5.59□□□□□ -1.51
SLC44A4Q53GD3 PCDH9-AS2-201ENST00000419371 538 ntTSL 3 BASIC5.59□□□□□ -1.51
SLC44A4Q53GD3 AC007161.1-204ENST00000423039 460 ntBASIC5.59□□□□□ -1.51
SLC44A4Q53GD3 AL133419.1-201ENST00000423153 640 ntTSL 3 BASIC5.59□□□□□ -1.51
SLC44A4Q53GD3 Z97206.2-201ENST00000423489 589 ntTSL 3 BASIC5.59□□□□□ -1.51
SLC44A4Q53GD3 FAR2P4-202ENST00000425399 584 ntBASIC5.59□□□□□ -1.51
SLC44A4Q53GD3 CRIP1P1-201ENST00000427567 185 ntBASIC5.59□□□□□ -1.51
SLC44A4Q53GD3 HIGD1AP12-201ENST00000427832 281 ntBASIC5.59□□□□□ -1.51
SLC44A4Q53GD3 AL354863.1-202ENST00000431695 494 ntTSL 5 BASIC5.59□□□□□ -1.51
SLC44A4Q53GD3 AC068135.1-201ENST00000446164 246 ntBASIC5.59□□□□□ -1.51
SLC44A4Q53GD3 AC005002.1-201ENST00000447458 540 ntBASIC5.59□□□□□ -1.51
SLC44A4Q53GD3 AC009220.1-201ENST00000451614 275 ntBASIC5.59□□□□□ -1.51
SLC44A4Q53GD3 TTTY19-201ENST00000453955 269 ntTSL 1 (best) BASIC5.59□□□□□ -1.51
SLC44A4Q53GD3 CYP4F62P-203ENST00000455215 552 ntTSL 4 BASIC5.59□□□□□ -1.51
SLC44A4Q53GD3 AP000563.1-201ENST00000490865 758 ntBASIC5.59□□□□□ -1.51
SLC44A4Q53GD3 CCDC39-AS1-201ENST00000495357 283 ntTSL 3 BASIC5.59□□□□□ -1.51
SLC44A4Q53GD3 LINC02479-201ENST00000508942 630 ntTSL 3 BASIC5.59□□□□□ -1.51
SLC44A4Q53GD3 AC091180.4-201ENST00000511322 245 ntTSL 2 BASIC5.59□□□□□ -1.51
SLC44A4Q53GD3 AC119751.1-201ENST00000513357 765 ntBASIC5.59□□□□□ -1.51
SLC44A4Q53GD3 MTND4LP31-201ENST00000514859 294 ntBASIC5.59□□□□□ -1.51
SLC44A4Q53GD3 LINC02143-201ENST00000519929 520 ntTSL 3 BASIC5.59□□□□□ -1.51
SLC44A4Q53GD3 AC091996.1-201ENST00000522274 600 ntTSL 3 BASIC5.59□□□□□ -1.51
SLC44A4Q53GD3 MAL2-208ENST00000523307 556 ntTSL 4 BASIC5.59□□□□□ -1.51
SLC44A4Q53GD3 AC083923.1-201ENST00000523708 376 ntBASIC5.59□□□□□ -1.51
SLC44A4Q53GD3 IGHVIII-76-1-201ENST00000523776 286 ntBASIC5.59□□□□□ -1.51
SLC44A4Q53GD3 AAGAB-203ENST00000542650 1015 ntTSL 2 BASIC5.59□□□□□ -1.51
SLC44A4Q53GD3 AC107958.2-201ENST00000555396 592 ntTSL 3 BASIC5.59□□□□□ -1.51
SLC44A4Q53GD3 AC090971.2-201ENST00000558142 510 ntTSL 3 BASIC5.59□□□□□ -1.51
SLC44A4Q53GD3 AC079411.1-201ENST00000565441 795 ntTSL 1 (best) BASIC5.59□□□□□ -1.51
SLC44A4Q53GD3 AC145350.1-201ENST00000567426 208 ntBASIC5.59□□□□□ -1.51
SLC44A4Q53GD3 AC106729.1-201ENST00000567777 466 ntTSL 3 BASIC5.59□□□□□ -1.51
SLC44A4Q53GD3 H3F3BP2-201ENST00000583907 357 ntBASIC5.59□□□□□ -1.51
SLC44A4Q53GD3 AC024592.1-202ENST00000590441 341 ntTSL 3 BASIC5.59□□□□□ -1.51
SLC44A4Q53GD3 AC092683.1-203ENST00000594050 654 ntTSL 5 BASIC5.59□□□□□ -1.51
SLC44A4Q53GD3 AC006115.2-201ENST00000596823 202 ntBASIC5.59□□□□□ -1.51
SLC44A4Q53GD3 AC022145.1-201ENST00000600673 383 ntTSL 3 BASIC5.59□□□□□ -1.51
SLC44A4Q53GD3 AC006237.1-201ENST00000603816 480 ntTSL 3 BASIC5.59□□□□□ -1.51
SLC44A4Q53GD3 AC005084.1-201ENST00000605160 304 ntBASIC5.59□□□□□ -1.51
SLC44A4Q53GD3 MALAT1-205ENST00000610851 584 ntTSL 2 BASIC5.59□□□□□ -1.51
SLC44A4Q53GD3 PACRG-210ENST00000611387 279 ntTSL 5 BASIC5.59□□□□□ -1.51
SLC44A4Q53GD3 AC021755.4-201ENST00000616620 456 ntBASIC5.59□□□□□ -1.51
SLC44A4Q53GD3 AC090527.3-201ENST00000619041 548 ntBASIC5.59□□□□□ -1.51
SLC44A4Q53GD3 AC007342.8-201ENST00000623278 678 ntBASIC5.59□□□□□ -1.51
SLC44A4Q53GD3 LAMTOR5-AS1-244ENST00000629484 780 ntTSL 5 BASIC5.59□□□□□ -1.51
SLC44A4Q53GD3 AL445623.2-201ENST00000640307 4805 ntTSL 1 (best) BASIC5.59□□□□□ -1.51
SLC44A4Q53GD3 VPS13D-213ENST00000613099 16245 ntAPPRIS ALT1 TSL 1 (best) BASIC5.59□□□□□ -1.51
SLC44A4Q53GD3 CLIP1-AS1-201ENST00000535976 1745 ntTSL 3 BASIC5.59□□□□□ -1.51
SLC44A4Q53GD3 LINC01625-201ENST00000454788 1690 ntTSL 2 BASIC5.59□□□□□ -1.52
SLC44A4Q53GD3 LINC01619-207ENST00000551843 2205 ntTSL 1 (best) BASIC5.59□□□□□ -1.52
SLC44A4Q53GD3 AC073055.1-201ENST00000456901 1621 ntBASIC5.59□□□□□ -1.52
SLC44A4Q53GD3 MAP3K2-201ENST00000344908 2135 ntAPPRIS P1 TSL 1 (best) BASIC5.59□□□□□ -1.52
SLC44A4Q53GD3 CYP3A43-201ENST00000222382 1515 ntAPPRIS P4 TSL 1 (best) BASIC5.58□□□□□ -1.52
SLC44A4Q53GD3 ZNF347-202ENST00000452676 4553 ntAPPRIS ALT2 TSL 2 BASIC5.58□□□□□ -1.52
SLC44A4Q53GD3 ZNF493-203ENST00000392288 5023 ntAPPRIS P1 TSL 1 (best) BASIC5.58□□□□□ -1.52
SLC44A4Q53GD3 AC006288.1-201ENST00000565320 1463 ntTSL 3 BASIC5.58□□□□□ -1.52
SLC44A4Q53GD3 CTAGE5-204ENST00000341749 2912 ntTSL 1 (best) BASIC5.58□□□□□ -1.52
SLC44A4Q53GD3 OR6B1-202ENST00000641698 5153 ntAPPRIS P1 BASIC5.58□□□□□ -1.52
SLC44A4Q53GD3 ETV1-207ENST00000405358 4181 ntTSL 5 BASIC5.58□□□□□ -1.52
SLC44A4Q53GD3 FAM26D-201ENST00000368596 1353 ntAPPRIS P1 TSL 5 BASIC5.58□□□□□ -1.52
SLC44A4Q53GD3 MTND4P10-201ENST00000446199 1363 ntBASIC5.58□□□□□ -1.52
SLC44A4Q53GD3 MTND4P8-201ENST00000514997 1362 ntBASIC5.58□□□□□ -1.52
SLC44A4Q53GD3 AL513185.3-201ENST00000433335 1300 ntBASIC5.58□□□□□ -1.52
SLC44A4Q53GD3 NF1-214ENST00000490416 1329 ntTSL 3 BASIC5.58□□□□□ -1.52
SLC44A4Q53GD3 GLRA2-202ENST00000355020 1730 ntAPPRIS ALT1 TSL 1 (best) BASIC5.58□□□□□ -1.52
SLC44A4Q53GD3 WDR17-201ENST00000280190 4705 ntAPPRIS P3 TSL 1 (best) BASIC5.58□□□□□ -1.52
SLC44A4Q53GD3 USP15-201ENST00000280377 4748 ntAPPRIS ALT1 TSL 1 (best) BASIC5.58□□□□□ -1.52
SLC44A4Q53GD3 CTAGE5-208ENST00000553352 3441 ntTSL 1 (best) BASIC5.58□□□□□ -1.52
Retrieved 100 of 98,524 protein–RNA pairs in 101.3 ms