Protein–RNA interactions for Protein: Q3V6T2

CCDC88A, Girdin, humanhuman

Predictions only

Length 1,871 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88AQ3V6T2 RBMS3-205ENST00000434693 8540 ntTSL 5 BASIC5.36□□□□□ -1.55
CCDC88AQ3V6T2 ESRRG-206ENST00000366938 5274 ntAPPRIS P1 TSL 1 (best) BASIC5.36□□□□□ -1.55
CCDC88AQ3V6T2 ZBTB21-201ENST00000310826 7449 ntAPPRIS P1 TSL 1 (best) BASIC5.36□□□□□ -1.55
CCDC88AQ3V6T2 CSPP1-203ENST00000519668 3715 ntAPPRIS ALT2 TSL 1 (best) BASIC5.36□□□□□ -1.55
CCDC88AQ3V6T2 NCK1-204ENST00000469404 2403 ntTSL 2 BASIC5.36□□□□□ -1.55
CCDC88AQ3V6T2 DDX4-204ENST00000505374 2884 ntAPPRIS P1 TSL 1 (best) BASIC5.36□□□□□ -1.55
CCDC88AQ3V6T2 RNA5SP36-201ENST00000410197 133 ntBASIC5.36□□□□□ -1.55
CCDC88AQ3V6T2 MRPL50P1-201ENST00000431951 384 ntBASIC5.36□□□□□ -1.55
CCDC88AQ3V6T2 AC004938.1-201ENST00000438468 308 ntBASIC5.36□□□□□ -1.55
CCDC88AQ3V6T2 AP000302.1-201ENST00000450928 666 ntTSL 2 BASIC5.36□□□□□ -1.55
CCDC88AQ3V6T2 AC012671.1-201ENST00000451912 203 ntBASIC5.36□□□□□ -1.55
CCDC88AQ3V6T2 AC097478.1-202ENST00000508021 567 ntTSL 4 BASIC5.36□□□□□ -1.55
CCDC88AQ3V6T2 AC090518.1-202ENST00000568246 578 ntTSL 4 BASIC5.36□□□□□ -1.55
CCDC88AQ3V6T2 AC129492.2-201ENST00000577807 517 ntTSL 3 BASIC5.36□□□□□ -1.55
CCDC88AQ3V6T2 TMEM30CP-203ENST00000637814 1035 ntBASIC5.36□□□□□ -1.55
CCDC88AQ3V6T2 COA1-220ENST00000640232 192 ntAPPRIS ALT2 TSL 3 BASIC5.36□□□□□ -1.55
CCDC88AQ3V6T2 PHACTR2-207ENST00000427704 9531 ntAPPRIS ALT2 TSL 1 (best) BASIC5.36□□□□□ -1.55
CCDC88AQ3V6T2 ATP13A4-203ENST00000392443 4016 ntTSL 5 BASIC5.36□□□□□ -1.55
CCDC88AQ3V6T2 C12orf4-201ENST00000261250 3826 ntAPPRIS P1 TSL 1 (best) BASIC5.36□□□□□ -1.55
CCDC88AQ3V6T2 AC079915.1-201ENST00000584382 2780 ntTSL 2 BASIC5.36□□□□□ -1.55
CCDC88AQ3V6T2 MYO5A-209ENST00000553916 5989 ntTSL 5 BASIC5.35□□□□□ -1.55
CCDC88AQ3V6T2 TLR8-201ENST00000218032 4216 ntAPPRIS ALT2 TSL 1 (best) BASIC5.35□□□□□ -1.55
CCDC88AQ3V6T2 GCG-202ENST00000418842 1289 ntAPPRIS P1 TSL 1 (best) BASIC5.35□□□□□ -1.55
CCDC88AQ3V6T2 MFSD13B-201ENST00000420133 1290 ntBASIC5.35□□□□□ -1.55
CCDC88AQ3V6T2 AC108751.2-201ENST00000469993 231 ntBASIC5.35□□□□□ -1.55
CCDC88AQ3V6T2 AL121834.1-201ENST00000572284 509 ntBASIC5.35□□□□□ -1.55
CCDC88AQ3V6T2 AC011471.1-201ENST00000585766 187 ntBASIC5.35□□□□□ -1.55
CCDC88AQ3V6T2 AC019176.2-201ENST00000611579 315 ntBASIC5.35□□□□□ -1.55
CCDC88AQ3V6T2 RC3H1-201ENST00000258349 10988 ntAPPRIS P3 TSL 1 (best) BASIC5.35□□□□□ -1.55
CCDC88AQ3V6T2 CLCN3-204ENST00000504131 5592 ntTSL 5 BASIC5.35□□□□□ -1.55
CCDC88AQ3V6T2 PRRC2C-202ENST00000367742 10366 ntAPPRIS ALT2 TSL 5 BASIC5.35□□□□□ -1.55
CCDC88AQ3V6T2 CNOT1-201ENST00000317147 8471 ntAPPRIS P3 TSL 1 (best) BASIC5.35□□□□□ -1.55
CCDC88AQ3V6T2 LINC01677-205ENST00000635636 2362 ntTSL 5 BASIC5.35□□□□□ -1.55
CCDC88AQ3V6T2 HERC4-205ENST00000412272 4211 ntTSL 1 (best) BASIC5.35□□□□□ -1.55
CCDC88AQ3V6T2 ZNF468-203ENST00000595646 4407 ntAPPRIS P1 TSL 1 (best) BASIC5.35□□□□□ -1.55
CCDC88AQ3V6T2 RLIMP1-201ENST00000339626 1680 ntBASIC5.35□□□□□ -1.55
CCDC88AQ3V6T2 IQCH-206ENST00000546225 3112 ntTSL 5 BASIC5.35□□□□□ -1.55
CCDC88AQ3V6T2 CNTD1-205ENST00000588527 1308 ntTSL 2 BASIC5.35□□□□□ -1.55
CCDC88AQ3V6T2 AC233968.1-201ENST00000611212 1300 ntBASIC5.35□□□□□ -1.55
CCDC88AQ3V6T2 CDR1-201ENST00000370532 2467 ntAPPRIS P1 BASIC5.35□□□□□ -1.55
CCDC88AQ3V6T2 LINC00161-201ENST00000412526 870 ntTSL 2 BASIC5.34□□□□□ -1.55
CCDC88AQ3V6T2 RPEP2-201ENST00000432149 701 ntBASIC5.34□□□□□ -1.55
CCDC88AQ3V6T2 KATNBL1P2-201ENST00000433311 835 ntBASIC5.34□□□□□ -1.55
CCDC88AQ3V6T2 KCNQ5-IT1-201ENST00000445310 563 ntTSL 2 BASIC5.34□□□□□ -1.55
CCDC88AQ3V6T2 MRPL48P1-201ENST00000445390 636 ntBASIC5.34□□□□□ -1.55
CCDC88AQ3V6T2 ABCF2P2-201ENST00000450549 296 ntBASIC5.34□□□□□ -1.55
CCDC88AQ3V6T2 IMMP2L-205ENST00000450877 761 ntTSL 2 BASIC5.34□□□□□ -1.55
CCDC88AQ3V6T2 PANCR-201ENST00000503456 493 ntTSL 5 BASIC5.34□□□□□ -1.55
CCDC88AQ3V6T2 AC091178.1-203ENST00000584586 279 ntBASIC5.34□□□□□ -1.55
CCDC88AQ3V6T2 ZNF562-205ENST00000587392 583 ntTSL 2 BASIC5.34□□□□□ -1.55
CCDC88AQ3V6T2 AC005520.3-201ENST00000602874 370 ntBASIC5.34□□□□□ -1.55
CCDC88AQ3V6T2 AC023762.1-201ENST00000603280 584 ntBASIC5.34□□□□□ -1.55
CCDC88AQ3V6T2 CR392039.5-201ENST00000623201 510 ntBASIC5.34□□□□□ -1.55
CCDC88AQ3V6T2 AC015908.5-201ENST00000623289 343 ntBASIC5.34□□□□□ -1.55
CCDC88AQ3V6T2 FP325313.1-201ENST00000638228 703 ntBASIC5.34□□□□□ -1.55
CCDC88AQ3V6T2 OR10Z1-202ENST00000641002 6323 ntAPPRIS P1 BASIC5.34□□□□□ -1.55
CCDC88AQ3V6T2 ETV1-207ENST00000405358 4181 ntTSL 5 BASIC5.34□□□□□ -1.55
CCDC88AQ3V6T2 ATP2C1-210ENST00000505330 4888 ntAPPRIS ALT2 TSL 2 BASIC5.34□□□□□ -1.55
CCDC88AQ3V6T2 C2orf78-201ENST00000409561 3045 ntAPPRIS P1 TSL 2 BASIC5.34□□□□□ -1.55
CCDC88AQ3V6T2 DZIP3-201ENST00000361582 5350 ntAPPRIS P1 TSL 1 (best) BASIC5.34□□□□□ -1.55
CCDC88AQ3V6T2 FSBP-203ENST00000611249 2181 ntAPPRIS P1 TSL 5 BASIC5.34□□□□□ -1.55
CCDC88AQ3V6T2 ESCO1-204ENST00000622333 1850 ntTSL 2 BASIC5.34□□□□□ -1.55
CCDC88AQ3V6T2 AC092162.3-201ENST00000624511 1624 ntBASIC5.34□□□□□ -1.55
CCDC88AQ3V6T2 ADAM29-201ENST00000359240 3325 ntAPPRIS P1 TSL 2 BASIC5.34□□□□□ -1.55
CCDC88AQ3V6T2 FAP-214ENST00000627638 2569 ntAPPRIS ALT1 TSL 5 BASIC5.34□□□□□ -1.55
CCDC88AQ3V6T2 ZNF24-202ENST00000399061 6282 ntAPPRIS P1 TSL 1 (best) BASIC5.34□□□□□ -1.55
CCDC88AQ3V6T2 TM4SF18-201ENST00000296059 3852 ntAPPRIS P1 TSL 1 (best) BASIC5.34□□□□□ -1.55
CCDC88AQ3V6T2 SRGAP1-201ENST00000355086 23331 ntAPPRIS P1 TSL 1 (best) BASIC5.34□□□□□ -1.55
CCDC88AQ3V6T2 OR13G1-201ENST00000359688 1046 ntAPPRIS P1 BASIC5.34□□□□□ -1.55
CCDC88AQ3V6T2 SNORA74C-2-201ENST00000411179 201 ntBASIC5.34□□□□□ -1.55
CCDC88AQ3V6T2 REV3L-IT1-201ENST00000411895 382 ntTSL 5 BASIC5.34□□□□□ -1.55
CCDC88AQ3V6T2 CYCSP43-201ENST00000438233 310 ntBASIC5.34□□□□□ -1.55
CCDC88AQ3V6T2 DDX39BP2-208ENST00000453923 258 ntBASIC5.34□□□□□ -1.55
CCDC88AQ3V6T2 AC092546.1-202ENST00000505628 499 ntTSL 2 BASIC5.34□□□□□ -1.55
CCDC88AQ3V6T2 AC127502.1-204ENST00000564861 618 ntTSL 3 BASIC5.34□□□□□ -1.55
CCDC88AQ3V6T2 RN7SL371P-201ENST00000578099 267 ntBASIC5.34□□□□□ -1.55
CCDC88AQ3V6T2 AC010487.1-201ENST00000594408 1172 ntBASIC5.34□□□□□ -1.55
CCDC88AQ3V6T2 TCF7L2-206ENST00000355995 4073 ntTSL 1 (best) BASIC5.34□□□□□ -1.56
CCDC88AQ3V6T2 RGS1-201ENST00000367459 1405 ntAPPRIS P1 TSL 1 (best) BASIC5.34□□□□□ -1.56
CCDC88AQ3V6T2 WDR63-203ENST00000370596 2905 ntAPPRIS ALT2 TSL 5 BASIC5.34□□□□□ -1.56
CCDC88AQ3V6T2 LINC01933-204ENST00000524295 3591 ntTSL 2 BASIC5.34□□□□□ -1.56
CCDC88AQ3V6T2 CPSF2-201ENST00000298875 13035 ntAPPRIS P1 TSL 1 (best) BASIC5.33□□□□□ -1.56
CCDC88AQ3V6T2 DOCK10-202ENST00000409592 7288 ntAPPRIS ALT2 TSL 1 (best) BASIC5.33□□□□□ -1.56
CCDC88AQ3V6T2 KMT2E-216ENST00000622386 1588 ntTSL 5 BASIC5.33□□□□□ -1.56
CCDC88AQ3V6T2 MAPK10-349ENST00000641767 3661 ntBASIC5.33□□□□□ -1.56
CCDC88AQ3V6T2 PRKACB-202ENST00000370682 4288 ntTSL 1 (best) BASIC5.33□□□□□ -1.56
CCDC88AQ3V6T2 PRUNE2-204ENST00000376718 12584 ntAPPRIS P3 TSL 5 BASIC5.33□□□□□ -1.56
CCDC88AQ3V6T2 UNC80-203ENST00000439458 13562 ntAPPRIS P1 TSL 5 BASIC5.33□□□□□ -1.56
CCDC88AQ3V6T2 LMOD2-202ENST00000458573 2346 ntAPPRIS P1 TSL 2 BASIC5.33□□□□□ -1.56
CCDC88AQ3V6T2 RNA5SP130-201ENST00000364431 114 ntBASIC5.33□□□□□ -1.56
CCDC88AQ3V6T2 AC233289.1-201ENST00000403700 508 ntBASIC5.33□□□□□ -1.56
CCDC88AQ3V6T2 AL158837.1-201ENST00000417644 452 ntTSL 2 BASIC5.33□□□□□ -1.56
CCDC88AQ3V6T2 AC241644.1-201ENST00000431525 446 ntTSL 3 BASIC5.33□□□□□ -1.56
CCDC88AQ3V6T2 AC096558.1-202ENST00000442794 561 ntTSL 4 BASIC5.33□□□□□ -1.56
CCDC88AQ3V6T2 AL500522.2-201ENST00000448562 343 ntBASIC5.33□□□□□ -1.56
CCDC88AQ3V6T2 AC104978.1-201ENST00000449387 391 ntBASIC5.33□□□□□ -1.56
CCDC88AQ3V6T2 AC010884.1-201ENST00000456519 642 ntTSL 3 BASIC5.33□□□□□ -1.56
CCDC88AQ3V6T2 KCTD9P2-201ENST00000512203 1013 ntBASIC5.33□□□□□ -1.56
CCDC88AQ3V6T2 AC097103.1-201ENST00000512398 273 ntTSL 3 BASIC5.33□□□□□ -1.56
CCDC88AQ3V6T2 AC099522.1-202ENST00000514718 367 ntBASIC5.33□□□□□ -1.56
Retrieved 100 of 98,524 protein–RNA pairs in 111.5 ms