Protein–RNA interactions for Protein: Q2UY09

COL28A1, Collagen alpha-1(XXVIII) chain, humanhuman

Predictions only

Length 1,125 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1Q2UY09 SEC61A2-203ENST00000379017 600 ntTSL 5 BASIC5□□□□□ -1.61
COL28A1Q2UY09 MIR142-201ENST00000384835 87 ntBASIC5□□□□□ -1.61
COL28A1Q2UY09 SMIM2-IT1-201ENST00000415082 478 ntTSL 3 BASIC5□□□□□ -1.61
COL28A1Q2UY09 CLYBL-AS1-201ENST00000416009 621 ntTSL 3 BASIC5□□□□□ -1.61
COL28A1Q2UY09 OR51A6P-201ENST00000418680 1004 ntBASIC5□□□□□ -1.61
COL28A1Q2UY09 LINC01934-202ENST00000424170 686 ntTSL 4 BASIC5□□□□□ -1.61
COL28A1Q2UY09 AP000233.1-201ENST00000426609 291 ntTSL 3 BASIC5□□□□□ -1.61
COL28A1Q2UY09 AC007403.1-201ENST00000427579 567 ntTSL 4 BASIC5□□□□□ -1.61
COL28A1Q2UY09 AC092447.2-201ENST00000435487 669 ntBASIC5□□□□□ -1.61
COL28A1Q2UY09 LINC01350-201ENST00000436955 642 ntTSL 3 BASIC5□□□□□ -1.61
COL28A1Q2UY09 ARF4P4-201ENST00000439608 520 ntBASIC5□□□□□ -1.61
COL28A1Q2UY09 AL359265.1-201ENST00000440296 795 ntBASIC5□□□□□ -1.61
COL28A1Q2UY09 AC073465.2-201ENST00000440938 498 ntBASIC5□□□□□ -1.61
COL28A1Q2UY09 AL353093.1-201ENST00000441292 436 ntBASIC5□□□□□ -1.61
COL28A1Q2UY09 AC091685.1-201ENST00000442436 448 ntTSL 3 BASIC5□□□□□ -1.61
COL28A1Q2UY09 AL031668.1-201ENST00000451556 603 ntTSL 3 BASIC5□□□□□ -1.61
COL28A1Q2UY09 TTTY19-201ENST00000453955 269 ntTSL 1 (best) BASIC5□□□□□ -1.61
COL28A1Q2UY09 AC010149.1-201ENST00000455357 571 ntTSL 4 BASIC5□□□□□ -1.61
COL28A1Q2UY09 AC022034.3-201ENST00000471393 478 ntBASIC5□□□□□ -1.61
COL28A1Q2UY09 LINC02000-201ENST00000483245 640 ntTSL 2 BASIC5□□□□□ -1.61
COL28A1Q2UY09 RN7SL423P-201ENST00000486202 304 ntBASIC5□□□□□ -1.61
COL28A1Q2UY09 AC069306.1-201ENST00000507006 843 ntBASIC5□□□□□ -1.61
COL28A1Q2UY09 MTND6P2-201ENST00000512226 524 ntBASIC5□□□□□ -1.61
COL28A1Q2UY09 AC009623.1-201ENST00000517964 1131 ntTSL 2 BASIC5□□□□□ -1.61
COL28A1Q2UY09 AC022784.4-201ENST00000518589 422 ntTSL 1 (best) BASIC5□□□□□ -1.61
COL28A1Q2UY09 LINC02267-202ENST00000522173 799 ntTSL 3 BASIC5□□□□□ -1.61
COL28A1Q2UY09 AC024681.2-201ENST00000523525 204 ntTSL 5 BASIC5□□□□□ -1.61
COL28A1Q2UY09 AC022511.1-201ENST00000544089 476 ntTSL 2 BASIC5□□□□□ -1.61
COL28A1Q2UY09 AP002373.1-201ENST00000544347 729 ntAPPRIS P1 TSL 3 BASIC5□□□□□ -1.61
COL28A1Q2UY09 NR1H4-204ENST00000546380 565 ntTSL 3 BASIC5□□□□□ -1.61
COL28A1Q2UY09 TWF1-207ENST00000548315 1170 ntTSL 1 (best) BASIC5□□□□□ -1.61
COL28A1Q2UY09 LINC02188-201ENST00000562064 550 ntTSL 4 BASIC5□□□□□ -1.61
COL28A1Q2UY09 AC010735.1-201ENST00000567305 1026 ntBASIC5□□□□□ -1.61
COL28A1Q2UY09 AC134669.2-201ENST00000578584 1008 ntAPPRIS P1 TSL 2 BASIC5□□□□□ -1.61
COL28A1Q2UY09 AC012254.4-201ENST00000588843 273 ntBASIC5□□□□□ -1.61
COL28A1Q2UY09 AC011453.2-201ENST00000603737 729 ntBASIC5□□□□□ -1.61
COL28A1Q2UY09 AC026979.4-201ENST00000606555 645 ntBASIC5□□□□□ -1.61
COL28A1Q2UY09 AL139124.1-201ENST00000609123 421 ntBASIC5□□□□□ -1.61
COL28A1Q2UY09 FRG1HP-204ENST00000617940 757 ntBASIC5□□□□□ -1.61
COL28A1Q2UY09 AC245452.5-201ENST00000620649 780 ntTSL 3 BASIC5□□□□□ -1.61
COL28A1Q2UY09 AP003485.1-201ENST00000625093 753 ntBASIC5□□□□□ -1.61
COL28A1Q2UY09 AC093495.1-217ENST00000627385 428 ntTSL 5 BASIC5□□□□□ -1.61
COL28A1Q2UY09 LINC00254-202ENST00000633813 439 ntTSL 3 BASIC5□□□□□ -1.61
COL28A1Q2UY09 CRNDE-213ENST00000635991 546 ntTSL 5 BASIC5□□□□□ -1.61
COL28A1Q2UY09 AC099654.9-201ENST00000637055 678 ntBASIC5□□□□□ -1.61
COL28A1Q2UY09 AC099654.8-201ENST00000637757 681 ntBASIC5□□□□□ -1.61
COL28A1Q2UY09 LMNTD1-202ENST00000413632 1520 ntTSL 1 (best) BASIC5□□□□□ -1.61
COL28A1Q2UY09 ZNF347-202ENST00000452676 4553 ntAPPRIS ALT2 TSL 2 BASIC5□□□□□ -1.61
COL28A1Q2UY09 KLRC4-KLRK1-201ENST00000539300 1507 ntAPPRIS P5 TSL 2 BASIC5□□□□□ -1.61
COL28A1Q2UY09 EDA2R-202ENST00000374719 3418 ntAPPRIS P3 TSL 1 (best) BASIC5□□□□□ -1.61
COL28A1Q2UY09 LINC00550-201ENST00000629293 3434 ntTSL 1 (best) BASIC5□□□□□ -1.61
COL28A1Q2UY09 DST-202ENST00000312431 17756 ntAPPRIS P2 TSL 5 BASIC5□□□□□ -1.61
COL28A1Q2UY09 KDM3B-209ENST00000542866 3634 ntTSL 2 BASIC5□□□□□ -1.61
COL28A1Q2UY09 MAPK10-236ENST00000638313 3971 ntTSL 5 BASIC5□□□□□ -1.61
COL28A1Q2UY09 RALGAPB-202ENST00000397040 8435 ntAPPRIS P3 TSL 1 (best) BASIC5□□□□□ -1.61
COL28A1Q2UY09 RXFP1-206ENST00000460056 2735 ntTSL 2 BASIC5□□□□□ -1.61
COL28A1Q2UY09 RFC3-202ENST00000434425 1461 ntTSL 5 BASIC5□□□□□ -1.61
COL28A1Q2UY09 FYB1-201ENST00000351578 4750 ntAPPRIS P3 TSL 1 (best) BASIC5□□□□□ -1.61
COL28A1Q2UY09 ABCA13-204ENST00000435803 17184 ntAPPRIS P2 TSL 1 (best) BASIC5□□□□□ -1.61
COL28A1Q2UY09 ASNSP1-204ENST00000641977 1664 ntBASIC4.99□□□□□ -1.61
COL28A1Q2UY09 ABCC13-202ENST00000463099 3842 ntBASIC4.99□□□□□ -1.61
COL28A1Q2UY09 ZNF117-201ENST00000282869 9080 ntAPPRIS P1 TSL 1 (best) BASIC4.99□□□□□ -1.61
COL28A1Q2UY09 ZNF347-201ENST00000334197 7960 ntAPPRIS P3 TSL 1 (best) BASIC4.99□□□□□ -1.61
COL28A1Q2UY09 ATP2C1-210ENST00000505330 4888 ntAPPRIS ALT2 TSL 2 BASIC4.99□□□□□ -1.61
COL28A1Q2UY09 ZNF285-204ENST00000591679 2388 ntAPPRIS ALT2 TSL 4 BASIC4.99□□□□□ -1.61
COL28A1Q2UY09 GAS2L3-202ENST00000537247 2742 ntTSL 2 BASIC4.99□□□□□ -1.61
COL28A1Q2UY09 FOXP1-IT1-201ENST00000498714 3539 ntTSL 2 BASIC4.99□□□□□ -1.61
COL28A1Q2UY09 CDKL3-210ENST00000523832 1501 ntAPPRIS ALT2 TSL 1 (best) BASIC4.99□□□□□ -1.61
COL28A1Q2UY09 OR5K4-201ENST00000354924 966 ntAPPRIS P1 BASIC4.99□□□□□ -1.61
COL28A1Q2UY09 PRKACB-203ENST00000370684 869 ntTSL 5 BASIC4.99□□□□□ -1.61
COL28A1Q2UY09 MIR600-201ENST00000385007 98 ntBASIC4.99□□□□□ -1.61
COL28A1Q2UY09 RPL17P50-201ENST00000396131 546 ntBASIC4.99□□□□□ -1.61
COL28A1Q2UY09 SNORA11F-201ENST00000408237 128 ntBASIC4.99□□□□□ -1.61
COL28A1Q2UY09 RN7SKP97-201ENST00000410966 333 ntBASIC4.99□□□□□ -1.61
COL28A1Q2UY09 AL365184.1-201ENST00000413801 572 ntTSL 3 BASIC4.99□□□□□ -1.61
COL28A1Q2UY09 AC109779.1-201ENST00000414475 573 ntTSL 5 BASIC4.99□□□□□ -1.61
COL28A1Q2UY09 TCEA1P4-201ENST00000415066 844 ntBASIC4.99□□□□□ -1.61
COL28A1Q2UY09 ARPP21-AS1-201ENST00000415706 542 ntTSL 4 BASIC4.99□□□□□ -1.61
COL28A1Q2UY09 P4HA2-AS1-201ENST00000417667 839 ntTSL 3 BASIC4.99□□□□□ -1.61
COL28A1Q2UY09 AL391807.1-202ENST00000419979 534 ntTSL 2 BASIC4.99□□□□□ -1.61
COL28A1Q2UY09 GNGT1-202ENST00000428834 731 ntTSL 3 BASIC4.99□□□□□ -1.61
COL28A1Q2UY09 AC011242.1-201ENST00000433596 1158 ntBASIC4.99□□□□□ -1.61
COL28A1Q2UY09 AL645638.1-201ENST00000440519 361 ntBASIC4.99□□□□□ -1.61
COL28A1Q2UY09 AC114877.1-201ENST00000446601 582 ntTSL 4 BASIC4.99□□□□□ -1.61
COL28A1Q2UY09 TPT1P1-201ENST00000458495 518 ntBASIC4.99□□□□□ -1.61
COL28A1Q2UY09 AC097484.1-201ENST00000471148 389 ntBASIC4.99□□□□□ -1.61
COL28A1Q2UY09 CNOT10-AS1-201ENST00000475395 466 ntTSL 3 BASIC4.99□□□□□ -1.61
COL28A1Q2UY09 AC008427.1-201ENST00000503102 655 ntBASIC4.99□□□□□ -1.61
COL28A1Q2UY09 AC010374.1-201ENST00000503762 1237 ntBASIC4.99□□□□□ -1.61
COL28A1Q2UY09 LINC02223-202ENST00000511596 578 ntTSL 5 BASIC4.99□□□□□ -1.61
COL28A1Q2UY09 CARD8-211ENST00000519332 500 ntTSL 1 (best) BASIC4.99□□□□□ -1.61
COL28A1Q2UY09 AC010376.1-201ENST00000522101 334 ntBASIC4.99□□□□□ -1.61
COL28A1Q2UY09 AC018442.3-201ENST00000523025 183 ntBASIC4.99□□□□□ -1.61
COL28A1Q2UY09 OR5AK3P-201ENST00000527486 1297 ntBASIC4.99□□□□□ -1.61
COL28A1Q2UY09 AP002444.1-201ENST00000534252 620 ntTSL 3 BASIC4.99□□□□□ -1.61
COL28A1Q2UY09 ARL1-211ENST00000551828 776 ntTSL 5 BASIC4.99□□□□□ -1.61
COL28A1Q2UY09 LINC02274-201ENST00000555539 1174 ntTSL 1 (best) BASIC4.99□□□□□ -1.61
COL28A1Q2UY09 AC023825.1-201ENST00000566704 1030 ntBASIC4.99□□□□□ -1.61
COL28A1Q2UY09 AC007599.2-201ENST00000573040 493 ntTSL 5 BASIC4.99□□□□□ -1.61
COL28A1Q2UY09 AC090371.2-203ENST00000578782 473 ntTSL 3 BASIC4.99□□□□□ -1.61
Retrieved 100 of 98,524 protein–RNA pairs in 109.8 ms