Protein–RNA interactions for Protein: O75351

VPS4B, Vacuolar protein sorting-associated protein 4B, humanhuman

Predictions only

Length 444 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4BO75351 AC021755.1-201ENST00000559747 1447 ntBASIC5.4□□□□□ -1.54
VPS4BO75351 GPALPP1-201ENST00000357537 5368 ntTSL 1 (best) BASIC5.4□□□□□ -1.54
VPS4BO75351 PATL1-201ENST00000300146 4072 ntAPPRIS P1 TSL 1 (best) BASIC5.4□□□□□ -1.54
VPS4BO75351 CLIP1-AS1-201ENST00000535976 1745 ntTSL 3 BASIC5.4□□□□□ -1.54
VPS4BO75351 RFC3-202ENST00000434425 1461 ntTSL 5 BASIC5.4□□□□□ -1.54
VPS4BO75351 ZNF639-210ENST00000621687 1458 ntAPPRIS P1 TSL 1 (best) BASIC5.4□□□□□ -1.54
VPS4BO75351 PEAK1-204ENST00000560626 19217 ntAPPRIS P1 TSL 5 BASIC5.4□□□□□ -1.54
VPS4BO75351 ZNF701-202ENST00000391785 2634 ntAPPRIS P3 TSL 1 (best) BASIC5.4□□□□□ -1.54
VPS4BO75351 C1orf27-201ENST00000287859 3792 ntAPPRIS P1 TSL 1 (best) BASIC5.4□□□□□ -1.54
VPS4BO75351 DDX58-201ENST00000379868 4089 ntTSL 5 BASIC5.4□□□□□ -1.54
VPS4BO75351 MMRN1-202ENST00000394980 5217 ntAPPRIS P1 TSL 5 BASIC5.4□□□□□ -1.54
VPS4BO75351 OR5T3-202ENST00000313033 969 ntAPPRIS P1 BASIC5.4□□□□□ -1.54
VPS4BO75351 snoZ40.1-201ENST00000364540 72 ntBASIC5.4□□□□□ -1.54
VPS4BO75351 RNA5SP30-201ENST00000365552 115 ntBASIC5.4□□□□□ -1.54
VPS4BO75351 SNORD56.6-201ENST00000384569 71 ntBASIC5.4□□□□□ -1.54
VPS4BO75351 RNF212B-201ENST00000399905 1071 ntTSL 5 BASIC5.4□□□□□ -1.54
VPS4BO75351 AL009179.1-201ENST00000406085 265 ntBASIC5.4□□□□□ -1.54
VPS4BO75351 MIR1302-8-201ENST00000408342 128 ntBASIC5.4□□□□□ -1.54
VPS4BO75351 AC092745.2-202ENST00000411880 369 ntBASIC5.4□□□□□ -1.54
VPS4BO75351 RPS6P23-201ENST00000413224 722 ntBASIC5.4□□□□□ -1.54
VPS4BO75351 AC092155.1-202ENST00000416111 932 ntTSL 1 (best) BASIC5.4□□□□□ -1.54
VPS4BO75351 AL662874.1-201ENST00000426065 230 ntBASIC5.4□□□□□ -1.54
VPS4BO75351 OR5AW1P-201ENST00000426334 1006 ntBASIC5.4□□□□□ -1.54
VPS4BO75351 AC006369.2-201ENST00000431712 384 ntTSL 3 BASIC5.4□□□□□ -1.54
VPS4BO75351 MTND1P32-201ENST00000433043 938 ntBASIC5.4□□□□□ -1.54
VPS4BO75351 AC090018.1-201ENST00000434369 367 ntBASIC5.4□□□□□ -1.54
VPS4BO75351 AC073143.1-201ENST00000436316 395 ntBASIC5.4□□□□□ -1.54
VPS4BO75351 AL354863.1-204ENST00000436430 556 ntTSL 3 BASIC5.4□□□□□ -1.54
VPS4BO75351 AC016772.1-201ENST00000444170 1261 ntBASIC5.4□□□□□ -1.54
VPS4BO75351 AC104978.1-201ENST00000449387 391 ntBASIC5.4□□□□□ -1.54
VPS4BO75351 RBMY2TP-201ENST00000451162 947 ntBASIC5.4□□□□□ -1.54
VPS4BO75351 NECAP1P2-201ENST00000455668 727 ntBASIC5.4□□□□□ -1.54
VPS4BO75351 AC021205.1-201ENST00000468797 348 ntBASIC5.4□□□□□ -1.54
VPS4BO75351 AC104831.1-201ENST00000470024 444 ntTSL 3 BASIC5.4□□□□□ -1.54
VPS4BO75351 COPS8P2-201ENST00000473228 627 ntBASIC5.4□□□□□ -1.54
VPS4BO75351 GIMAP2-202ENST00000474605 309 ntTSL 3 BASIC5.4□□□□□ -1.54
VPS4BO75351 AC037198.2-201ENST00000478845 733 ntBASIC5.4□□□□□ -1.54
VPS4BO75351 LINC02005-201ENST00000498832 782 ntTSL 3 BASIC5.4□□□□□ -1.54
VPS4BO75351 AC107463.1-203ENST00000509713 284 ntTSL 5 BASIC5.4□□□□□ -1.54
VPS4BO75351 LNX1-AS1-204ENST00000514364 495 ntTSL 3 BASIC5.4□□□□□ -1.54
VPS4BO75351 FABP5P12-201ENST00000515543 389 ntBASIC5.4□□□□□ -1.54
VPS4BO75351 RNA5SP230-201ENST00000517039 122 ntBASIC5.4□□□□□ -1.54
VPS4BO75351 AC087379.1-201ENST00000524613 993 ntTSL 5 BASIC5.4□□□□□ -1.54
VPS4BO75351 HIGD1AP5-201ENST00000529959 259 ntBASIC5.4□□□□□ -1.54
VPS4BO75351 AC007406.1-201ENST00000544067 315 ntTSL 3 BASIC5.4□□□□□ -1.54
VPS4BO75351 NELL2-211ENST00000548826 559 ntTSL 2 BASIC5.4□□□□□ -1.54
VPS4BO75351 AC026992.1-201ENST00000558269 571 ntTSL 2 BASIC5.4□□□□□ -1.54
VPS4BO75351 AC018558.3-201ENST00000567902 572 ntTSL 4 BASIC5.4□□□□□ -1.54
VPS4BO75351 AC087463.3-201ENST00000570105 415 ntTSL 3 BASIC5.4□□□□□ -1.54
VPS4BO75351 AC019322.1-201ENST00000571869 389 ntBASIC5.4□□□□□ -1.54
VPS4BO75351 IMMP1LP3-201ENST00000604197 224 ntBASIC5.4□□□□□ -1.54
VPS4BO75351 AL451086.1-201ENST00000605596 223 ntBASIC5.4□□□□□ -1.54
VPS4BO75351 Z98949.1-207ENST00000609157 814 ntTSL 5 BASIC5.4□□□□□ -1.54
VPS4BO75351 RPSAP73-201ENST00000614820 330 ntBASIC5.4□□□□□ -1.54
VPS4BO75351 RN7SL544P-201ENST00000617232 284 ntBASIC5.4□□□□□ -1.54
VPS4BO75351 AC243829.4-201ENST00000620056 701 ntTSL 5 BASIC5.4□□□□□ -1.54
VPS4BO75351 MIR6837-201ENST00000620884 64 ntBASIC5.4□□□□□ -1.54
VPS4BO75351 RN7SL763P-201ENST00000620922 284 ntBASIC5.4□□□□□ -1.54
VPS4BO75351 AC079906.1-201ENST00000621214 815 ntTSL 3 BASIC5.4□□□□□ -1.54
VPS4BO75351 AC007490.1-201ENST00000624321 703 ntBASIC5.4□□□□□ -1.54
VPS4BO75351 OR8B1P-202ENST00000641132 1178 ntBASIC5.4□□□□□ -1.54
VPS4BO75351 MFSD8-245ENST00000641743 948 ntBASIC5.4□□□□□ -1.54
VPS4BO75351 USP7-202ENST00000381886 3587 ntTSL 1 (best) BASIC5.4□□□□□ -1.55
VPS4BO75351 UACA-211ENST00000560441 4723 ntAPPRIS ALT2 TSL 5 BASIC5.4□□□□□ -1.55
VPS4BO75351 RNF20-202ENST00000389120 3940 ntAPPRIS P1 TSL 1 (best) BASIC5.4□□□□□ -1.55
VPS4BO75351 GPHN-204ENST00000543237 2459 ntTSL 2 BASIC5.4□□□□□ -1.55
VPS4BO75351 AC235565.1-201ENST00000456962 1325 ntBASIC5.4□□□□□ -1.55
VPS4BO75351 BAZ2B-203ENST00000392782 8058 ntTSL 1 (best) BASIC5.4□□□□□ -1.55
VPS4BO75351 AC092376.2-201ENST00000622621 4116 ntBASIC5.4□□□□□ -1.55
VPS4BO75351 ADAM29-203ENST00000445694 3244 ntAPPRIS P1 TSL 1 (best) BASIC5.4□□□□□ -1.55
VPS4BO75351 ST8SIA4-201ENST00000231461 6303 ntAPPRIS P1 TSL 1 (best) BASIC5.4□□□□□ -1.55
VPS4BO75351 TAX1BP1-203ENST00000409980 2629 ntAPPRIS ALT2 TSL 5 BASIC5.4□□□□□ -1.55
VPS4BO75351 NBPF10-202ENST00000617010 11630 ntTSL 5 BASIC5.4□□□□□ -1.55
VPS4BO75351 SLC10A7-202ENST00000394059 1730 ntTSL 1 (best) BASIC5.4□□□□□ -1.55
VPS4BO75351 MAPK6PS2-201ENST00000379571 2060 ntBASIC5.39□□□□□ -1.55
VPS4BO75351 PTPRD-213ENST00000537002 8224 ntTSL 1 (best) BASIC5.39□□□□□ -1.55
VPS4BO75351 MMP8-201ENST00000236826 3056 ntAPPRIS P1 TSL 1 (best) BASIC5.39□□□□□ -1.55
VPS4BO75351 SLC12A1-205ENST00000558405 3426 ntAPPRIS P3 TSL 1 (best) BASIC5.39□□□□□ -1.55
VPS4BO75351 AC068870.1-201ENST00000563737 2455 ntBASIC5.39□□□□□ -1.55
VPS4BO75351 AC018809.2-201ENST00000602436 3823 ntBASIC5.39□□□□□ -1.55
VPS4BO75351 CYP4Z2P-201ENST00000423332 1512 ntBASIC5.39□□□□□ -1.55
VPS4BO75351 CASP1-208ENST00000527979 1521 ntTSL 5 BASIC5.39□□□□□ -1.55
VPS4BO75351 ARHGAP28-207ENST00000532996 1859 ntTSL 1 (best) BASIC5.39□□□□□ -1.55
VPS4BO75351 USMG5-201ENST00000309579 364 ntAPPRIS P1 TSL 1 (best) BASIC5.39□□□□□ -1.55
VPS4BO75351 OR4S2-201ENST00000312422 936 ntAPPRIS P1 BASIC5.39□□□□□ -1.55
VPS4BO75351 BMS1P3-201ENST00000372011 932 ntBASIC5.39□□□□□ -1.55
VPS4BO75351 RNU6-171P-201ENST00000384354 107 ntBASIC5.39□□□□□ -1.55
VPS4BO75351 RNU6-729P-201ENST00000384399 107 ntBASIC5.39□□□□□ -1.55
VPS4BO75351 MIR320B1-201ENST00000390209 79 ntBASIC5.39□□□□□ -1.55
VPS4BO75351 RNA5SP241-201ENST00000391326 114 ntBASIC5.39□□□□□ -1.55
VPS4BO75351 RNU2-22P-201ENST00000411266 212 ntBASIC5.39□□□□□ -1.55
VPS4BO75351 AL669831.5-220ENST00000412115 581 ntTSL 3 BASIC5.39□□□□□ -1.55
VPS4BO75351 TRGV6-201ENST00000417928 299 ntBASIC5.39□□□□□ -1.55
VPS4BO75351 AL365203.2-201ENST00000423444 196 ntBASIC5.39□□□□□ -1.55
VPS4BO75351 FMO7P-201ENST00000436045 768 ntBASIC5.39□□□□□ -1.55
VPS4BO75351 RPL7P29-201ENST00000437151 728 ntBASIC5.39□□□□□ -1.55
VPS4BO75351 AL807757.1-201ENST00000437846 424 ntTSL 3 BASIC5.39□□□□□ -1.55
VPS4BO75351 AL445567.1-201ENST00000439121 144 ntBASIC5.39□□□□□ -1.55
VPS4BO75351 AL929288.2-201ENST00000446368 407 ntBASIC5.39□□□□□ -1.55
VPS4BO75351 AL590764.1-201ENST00000450860 726 ntTSL 3 BASIC5.39□□□□□ -1.55
Retrieved 100 of 98,524 protein–RNA pairs in 77.5 ms