Protein–RNA interactions for Protein: Q9NPC8

SIX2, Homeobox protein SIX2, humanhuman

Predictions only

Length 291 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SIX2Q9NPC8 AL022310.1-201ENST00000436974 690 ntTSL 2 BASIC4.83□□□□□ -1.64
SIX2Q9NPC8 AL161618.1-201ENST00000438738 761 ntTSL 5 BASIC4.83□□□□□ -1.64
SIX2Q9NPC8 AC073648.4-201ENST00000442655 781 ntBASIC4.83□□□□□ -1.64
SIX2Q9NPC8 RAB28P3-201ENST00000448325 597 ntBASIC4.83□□□□□ -1.64
SIX2Q9NPC8 AC012671.1-201ENST00000451912 203 ntBASIC4.83□□□□□ -1.64
SIX2Q9NPC8 RPL35AP28-201ENST00000459730 331 ntBASIC4.83□□□□□ -1.64
SIX2Q9NPC8 AC006967.1-201ENST00000467608 589 ntBASIC4.83□□□□□ -1.64
SIX2Q9NPC8 ARHGEF3-AS1-201ENST00000477246 489 ntTSL 2 BASIC4.83□□□□□ -1.64
SIX2Q9NPC8 CD200R1-205ENST00000490004 778 ntTSL 1 (best) BASIC4.83□□□□□ -1.64
SIX2Q9NPC8 AC113346.1-201ENST00000510150 287 ntTSL 3 BASIC4.83□□□□□ -1.64
SIX2Q9NPC8 FABP5P6-201ENST00000510588 409 ntBASIC4.83□□□□□ -1.64
SIX2Q9NPC8 LINC02234-202ENST00000513288 705 ntTSL 5 BASIC4.83□□□□□ -1.64
SIX2Q9NPC8 AC093772.1-201ENST00000513519 506 ntTSL 2 BASIC4.83□□□□□ -1.64
SIX2Q9NPC8 TCP11X3P-202ENST00000514289 1254 ntBASIC4.83□□□□□ -1.64
SIX2Q9NPC8 AL671862.1-201ENST00000515851 349 ntBASIC4.83□□□□□ -1.64
SIX2Q9NPC8 AC103853.1-201ENST00000520588 649 ntTSL 5 BASIC4.83□□□□□ -1.64
SIX2Q9NPC8 IGLV3-26-201ENST00000520756 302 ntBASIC4.83□□□□□ -1.64
SIX2Q9NPC8 AC090692.1-202ENST00000525363 607 ntTSL 4 BASIC4.83□□□□□ -1.64
SIX2Q9NPC8 AC100770.1-201ENST00000532310 322 ntBASIC4.83□□□□□ -1.64
SIX2Q9NPC8 RPL23AP97-201ENST00000568955 471 ntBASIC4.83□□□□□ -1.64
SIX2Q9NPC8 AC090844.2-203ENST00000582263 632 ntTSL 5 BASIC4.83□□□□□ -1.64
SIX2Q9NPC8 MIR4480-201ENST00000582492 71 ntBASIC4.83□□□□□ -1.64
SIX2Q9NPC8 AC007952.9-201ENST00000584365 191 ntTSL 3 BASIC4.83□□□□□ -1.64
SIX2Q9NPC8 AL121989.1-201ENST00000585888 746 ntTSL 3 BASIC4.83□□□□□ -1.64
SIX2Q9NPC8 DAB1-AS1-208ENST00000586465 748 ntTSL 5 BASIC4.83□□□□□ -1.64
SIX2Q9NPC8 AC015911.5-201ENST00000587076 451 ntBASIC4.83□□□□□ -1.64
SIX2Q9NPC8 BNIP3P31-201ENST00000604515 566 ntBASIC4.83□□□□□ -1.64
SIX2Q9NPC8 AC135178.6-201ENST00000605314 398 ntBASIC4.83□□□□□ -1.64
SIX2Q9NPC8 AC024940.4-201ENST00000605507 246 ntBASIC4.83□□□□□ -1.64
SIX2Q9NPC8 AC020634.1-201ENST00000608701 549 ntBASIC4.83□□□□□ -1.64
SIX2Q9NPC8 AL163051.2-201ENST00000618976 735 ntBASIC4.83□□□□□ -1.64
SIX2Q9NPC8 MIR7703-201ENST00000620784 77 ntBASIC4.83□□□□□ -1.64
SIX2Q9NPC8 AC010872.1-201ENST00000624225 675 ntBASIC4.83□□□□□ -1.64
SIX2Q9NPC8 AP000550.3-201ENST00000637734 379 ntBASIC4.83□□□□□ -1.64
SIX2Q9NPC8 ZBED6-202ENST00000550078 12481 ntAPPRIS P1 TSL 1 (best) BASIC4.83□□□□□ -1.64
SIX2Q9NPC8 SLC13A1-201ENST00000194130 3815 ntAPPRIS P1 TSL 1 (best) BASIC4.83□□□□□ -1.64
SIX2Q9NPC8 DTNA-203ENST00000315456 1706 ntTSL 1 (best) BASIC4.83□□□□□ -1.64
SIX2Q9NPC8 GRIA2-202ENST00000296526 5621 ntAPPRIS P3 TSL 1 (best) BASIC4.83□□□□□ -1.64
SIX2Q9NPC8 MBNL3-201ENST00000370839 1575 ntAPPRIS ALT1 TSL 1 (best) BASIC4.82□□□□□ -1.64
SIX2Q9NPC8 ZEB1-205ENST00000446923 6267 ntAPPRIS ALT2 TSL 5 BASIC4.82□□□□□ -1.64
SIX2Q9NPC8 PLCH1-201ENST00000334686 6128 ntAPPRIS P3 TSL 1 (best) BASIC4.82□□□□□ -1.64
SIX2Q9NPC8 ANK2-202ENST00000357077 14196 ntAPPRIS P3 TSL 1 (best) BASIC4.82□□□□□ -1.64
SIX2Q9NPC8 PLS3-209ENST00000539310 3037 ntAPPRIS P1 TSL 1 (best) BASIC4.82□□□□□ -1.64
SIX2Q9NPC8 CYP7A1-201ENST00000301645 2950 ntAPPRIS P1 TSL 1 (best) BASIC4.82□□□□□ -1.64
SIX2Q9NPC8 GPR85-201ENST00000297146 5079 ntAPPRIS P1 TSL 1 (best) BASIC4.82□□□□□ -1.64
SIX2Q9NPC8 PMCHL2-201ENST00000415808 1841 ntTSL 1 (best) BASIC4.82□□□□□ -1.64
SIX2Q9NPC8 RNA5SP307-201ENST00000362863 116 ntBASIC4.82□□□□□ -1.64
SIX2Q9NPC8 SNORD113.2-201ENST00000364166 89 ntBASIC4.82□□□□□ -1.64
SIX2Q9NPC8 SNORD115-48-201ENST00000364764 76 ntBASIC4.82□□□□□ -1.64
SIX2Q9NPC8 OR5K3-201ENST00000383695 966 ntAPPRIS P1 BASIC4.82□□□□□ -1.64
SIX2Q9NPC8 SNORA74C-2-201ENST00000411179 201 ntBASIC4.82□□□□□ -1.64
SIX2Q9NPC8 AL139095.3-201ENST00000419672 1203 ntBASIC4.82□□□□□ -1.64
SIX2Q9NPC8 AL121882.1-201ENST00000422893 417 ntBASIC4.82□□□□□ -1.64
SIX2Q9NPC8 NPM1P22-201ENST00000427761 952 ntBASIC4.82□□□□□ -1.64
SIX2Q9NPC8 SCP2-206ENST00000430330 938 ntTSL 2 BASIC4.82□□□□□ -1.64
SIX2Q9NPC8 TPTE2P1-203ENST00000434100 514 ntTSL 3 BASIC4.82□□□□□ -1.64
SIX2Q9NPC8 AC007000.2-201ENST00000442564 487 ntBASIC4.82□□□□□ -1.64
SIX2Q9NPC8 AL353148.1-203ENST00000452286 665 ntTSL 3 BASIC4.82□□□□□ -1.64
SIX2Q9NPC8 DDX39BP2-208ENST00000453923 258 ntBASIC4.82□□□□□ -1.64
SIX2Q9NPC8 CABYRP1-201ENST00000465493 1045 ntBASIC4.82□□□□□ -1.64
SIX2Q9NPC8 AC008410.1-201ENST00000483777 339 ntBASIC4.82□□□□□ -1.64
SIX2Q9NPC8 F11-205ENST00000492972 1204 ntTSL 2 BASIC4.82□□□□□ -1.64
SIX2Q9NPC8 NADK2-AS1-201ENST00000501794 720 ntTSL 1 (best) BASIC4.82□□□□□ -1.64
SIX2Q9NPC8 AC010468.3-201ENST00000508225 458 ntBASIC4.82□□□□□ -1.64
SIX2Q9NPC8 AC113423.1-201ENST00000523279 289 ntTSL 3 BASIC4.82□□□□□ -1.64
SIX2Q9NPC8 MTND1P6-201ENST00000523621 946 ntBASIC4.82□□□□□ -1.64
SIX2Q9NPC8 LINC00944-202ENST00000540684 888 ntTSL 1 (best) BASIC4.82□□□□□ -1.64
SIX2Q9NPC8 AC008147.3-201ENST00000548666 354 ntBASIC4.82□□□□□ -1.64
SIX2Q9NPC8 AC090330.1-201ENST00000588646 764 ntBASIC4.82□□□□□ -1.64
SIX2Q9NPC8 AC018645.2-201ENST00000609151 472 ntBASIC4.82□□□□□ -1.64
SIX2Q9NPC8 CR589904.2-201ENST00000612533 440 ntBASIC4.82□□□□□ -1.64
SIX2Q9NPC8 AC023509.5-201ENST00000617434 807 ntBASIC4.82□□□□□ -1.64
SIX2Q9NPC8 MIR548A1HG-201ENST00000636739 558 ntTSL 4 BASIC4.82□□□□□ -1.64
SIX2Q9NPC8 RUVBL2-213ENST00000639391 120 ntTSL 5 BASIC4.82□□□□□ -1.64
SIX2Q9NPC8 MAPK10-263ENST00000641052 4307 ntBASIC4.82□□□□□ -1.64
SIX2Q9NPC8 SLC17A1-204ENST00000476801 1704 ntAPPRIS P1 TSL 2 BASIC4.82□□□□□ -1.64
SIX2Q9NPC8 OSBPL11-201ENST00000296220 4191 ntAPPRIS P1 TSL 1 (best) BASIC4.82□□□□□ -1.64
SIX2Q9NPC8 BDNF-AS-202ENST00000499568 2039 ntTSL 1 (best) BASIC4.82□□□□□ -1.64
SIX2Q9NPC8 AL132656.3-201ENST00000606384 1595 ntBASIC4.82□□□□□ -1.64
SIX2Q9NPC8 SLC26A5-207ENST00000393729 2422 ntTSL 5 BASIC4.82□□□□□ -1.64
SIX2Q9NPC8 NUTM2B-AS1-213ENST00000619625 7611 ntTSL 2 BASIC4.82□□□□□ -1.64
SIX2Q9NPC8 TET2-202ENST00000305737 9233 ntTSL 1 (best) BASIC4.82□□□□□ -1.64
SIX2Q9NPC8 RIMS1-204ENST00000401910 3542 ntTSL 2 BASIC4.81□□□□□ -1.64
SIX2Q9NPC8 FBXL13-207ENST00000455112 2274 ntTSL 1 (best) BASIC4.81□□□□□ -1.64
SIX2Q9NPC8 ZNF705D-202ENST00000400085 3377 ntAPPRIS P1 TSL 5 BASIC4.81□□□□□ -1.64
SIX2Q9NPC8 AC009501.3-201ENST00000605001 1352 ntBASIC4.81□□□□□ -1.64
SIX2Q9NPC8 MTND4P9-201ENST00000507819 1346 ntBASIC4.81□□□□□ -1.64
SIX2Q9NPC8 OR56A3-205ENST00000641905 4595 ntAPPRIS P1 BASIC4.81□□□□□ -1.64
SIX2Q9NPC8 RNVU1-6-201ENST00000364688 164 ntBASIC4.81□□□□□ -1.64
SIX2Q9NPC8 RNA5SP22-201ENST00000365393 109 ntBASIC4.81□□□□□ -1.64
SIX2Q9NPC8 LIX1L-AS1-201ENST00000366105 377 ntTSL 5 BASIC4.81□□□□□ -1.64
SIX2Q9NPC8 GCNT6-201ENST00000379591 934 ntBASIC4.81□□□□□ -1.64
SIX2Q9NPC8 SRY-201ENST00000383070 845 ntAPPRIS P1 BASIC4.81□□□□□ -1.64
SIX2Q9NPC8 AC007068.1-201ENST00000396690 844 ntBASIC4.81□□□□□ -1.64
SIX2Q9NPC8 MIR298-201ENST00000401212 88 ntBASIC4.81□□□□□ -1.64
SIX2Q9NPC8 AL078604.1-201ENST00000404609 466 ntBASIC4.81□□□□□ -1.64
SIX2Q9NPC8 DPYD-AS1-201ENST00000422980 533 ntTSL 3 BASIC4.81□□□□□ -1.64
SIX2Q9NPC8 SKP1P3-201ENST00000429280 487 ntBASIC4.81□□□□□ -1.64
SIX2Q9NPC8 LINC02476-202ENST00000431071 559 ntTSL 4 BASIC4.81□□□□□ -1.64
SIX2Q9NPC8 ZNF965P-201ENST00000432501 817 ntBASIC4.81□□□□□ -1.64
Retrieved 100 of 98,524 protein–RNA pairs in 157.8 ms