Protein–RNA interactions for Protein: P47902

CDX1, Homeobox protein CDX-1, humanhuman

Predicted RBP Predictions only

Length 265 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDX1P47902 RAG2-201ENST00000311485 2388 ntAPPRIS P1 TSL 1 (best) BASIC4.27□□□□□ -1.73
CDX1P47902 PAK3-213ENST00000620137 2130 ntTSL 5 BASIC4.27□□□□□ -1.73
CDX1P47902 AL031119.1-201ENST00000404707 1879 ntBASIC4.27□□□□□ -1.73
CDX1P47902 CRYAB-201ENST00000227251 848 ntAPPRIS P1 TSL 5 BASIC4.27□□□□□ -1.73
CDX1P47902 MDM2-203ENST00000299252 966 ntTSL 1 (best) BASIC4.27□□□□□ -1.73
CDX1P47902 GUCA1C-202ENST00000393963 900 ntTSL 1 (best) BASIC4.27□□□□□ -1.73
CDX1P47902 RPL34-203ENST00000394668 853 ntAPPRIS P1 TSL 1 (best) BASIC4.27□□□□□ -1.73
CDX1P47902 TNFRSF17-202ENST00000396495 668 ntAPPRIS ALT2 TSL 1 (best) BASIC4.27□□□□□ -1.73
CDX1P47902 FBXO11-203ENST00000405808 299 ntTSL 5 BASIC4.27□□□□□ -1.73
CDX1P47902 RNU6ATAC18P-201ENST00000408413 101 ntBASIC4.27□□□□□ -1.73
CDX1P47902 RNU2-6P-201ENST00000411404 190 ntBASIC4.27□□□□□ -1.73
CDX1P47902 AL024507.1-201ENST00000412741 274 ntBASIC4.27□□□□□ -1.73
CDX1P47902 UBE2V1P9-201ENST00000414760 368 ntBASIC4.27□□□□□ -1.73
CDX1P47902 CLYBL-AS1-201ENST00000416009 621 ntTSL 3 BASIC4.27□□□□□ -1.73
CDX1P47902 AC006007.1-201ENST00000422084 672 ntTSL 2 BASIC4.27□□□□□ -1.73
CDX1P47902 OR5AW1P-201ENST00000426334 1006 ntBASIC4.27□□□□□ -1.73
CDX1P47902 RPL12P17-201ENST00000432393 498 ntBASIC4.27□□□□□ -1.73
CDX1P47902 DIAPH2-AS1-201ENST00000439759 971 ntTSL 3 BASIC4.27□□□□□ -1.73
CDX1P47902 AC009263.1-201ENST00000441193 1239 ntBASIC4.27□□□□□ -1.73
CDX1P47902 AC044797.1-201ENST00000445744 679 ntBASIC4.27□□□□□ -1.73
CDX1P47902 BTF3P6-201ENST00000448054 499 ntBASIC4.27□□□□□ -1.73
CDX1P47902 AC034195.1-203ENST00000455703 728 ntTSL 2 BASIC4.27□□□□□ -1.73
CDX1P47902 AL592161.1-201ENST00000456389 861 ntTSL 3 BASIC4.27□□□□□ -1.73
CDX1P47902 AL021393.1-201ENST00000456740 539 ntTSL 5 BASIC4.27□□□□□ -1.73
CDX1P47902 RPS26P39-201ENST00000469206 341 ntBASIC4.27□□□□□ -1.73
CDX1P47902 AC092957.1-201ENST00000473299 570 ntTSL 4 BASIC4.27□□□□□ -1.73
CDX1P47902 RPL23AP37-201ENST00000479658 549 ntBASIC4.27□□□□□ -1.73
CDX1P47902 CASP12-210ENST00000494737 961 ntTSL 1 (best) BASIC4.27□□□□□ -1.73
CDX1P47902 EEF1A1P25-201ENST00000495704 1267 ntBASIC4.27□□□□□ -1.73
CDX1P47902 AC008696.2-201ENST00000503323 825 ntTSL 3 BASIC4.27□□□□□ -1.73
CDX1P47902 HPRT1P2-201ENST00000505250 544 ntBASIC4.27□□□□□ -1.73
CDX1P47902 AC098799.3-201ENST00000506095 438 ntBASIC4.27□□□□□ -1.73
CDX1P47902 LINC02117-201ENST00000513673 540 ntTSL 4 BASIC4.27□□□□□ -1.73
CDX1P47902 AC110760.1-201ENST00000513770 590 ntTSL 3 BASIC4.27□□□□□ -1.73
CDX1P47902 AC009623.1-201ENST00000517964 1131 ntTSL 2 BASIC4.27□□□□□ -1.73
CDX1P47902 AC040914.1-201ENST00000518674 318 ntTSL 3 BASIC4.27□□□□□ -1.73
CDX1P47902 AC104036.1-201ENST00000523550 611 ntTSL 3 BASIC4.27□□□□□ -1.73
CDX1P47902 AP003066.2-201ENST00000529375 555 ntBASIC4.27□□□□□ -1.73
CDX1P47902 AC139103.1-201ENST00000534696 1030 ntBASIC4.27□□□□□ -1.73
CDX1P47902 AC244502.1-203ENST00000541008 576 ntTSL 4 BASIC4.27□□□□□ -1.73
CDX1P47902 AC122688.1-201ENST00000541494 223 ntBASIC4.27□□□□□ -1.73
CDX1P47902 AC039056.1-201ENST00000552704 467 ntTSL 3 BASIC4.27□□□□□ -1.73
CDX1P47902 AL049779.2-201ENST00000553847 315 ntBASIC4.27□□□□□ -1.73
CDX1P47902 AL049875.1-202ENST00000556620 857 ntTSL 3 BASIC4.27□□□□□ -1.73
CDX1P47902 ARPP19-205ENST00000563566 568 ntTSL 4 BASIC4.27□□□□□ -1.73
CDX1P47902 LINC02168-201ENST00000565327 352 ntTSL 2 BASIC4.27□□□□□ -1.73
CDX1P47902 MIR4716-201ENST00000579628 84 ntBASIC4.27□□□□□ -1.73
CDX1P47902 GMFG-202ENST00000594700 397 ntTSL 2 BASIC4.27□□□□□ -1.73
CDX1P47902 AC024563.1-201ENST00000601860 618 ntTSL 2 BASIC4.27□□□□□ -1.73
CDX1P47902 AP002906.1-201ENST00000603405 233 ntBASIC4.27□□□□□ -1.73
CDX1P47902 LINC02112-204ENST00000606222 429 ntTSL 5 BASIC4.27□□□□□ -1.73
CDX1P47902 AL512624.1-201ENST00000613638 469 ntBASIC4.27□□□□□ -1.73
CDX1P47902 LINC00901.1-201ENST00000617252 152 ntBASIC4.27□□□□□ -1.73
CDX1P47902 MIR325HG-202ENST00000626832 598 ntTSL 4 BASIC4.27□□□□□ -1.73
CDX1P47902 AC074101.1-201ENST00000637861 241 ntBASIC4.27□□□□□ -1.73
CDX1P47902 AC006927.2-201ENST00000639256 389 ntBASIC4.27□□□□□ -1.73
CDX1P47902 OR51F2-202ENST00000641672 1136 ntAPPRIS P2 BASIC4.27□□□□□ -1.73
CDX1P47902 LINC01020-202ENST00000508201 1800 ntTSL 1 (best) BASIC4.27□□□□□ -1.73
CDX1P47902 MTERF1-202ENST00000406735 1639 ntAPPRIS ALT2 TSL 2 BASIC4.27□□□□□ -1.73
CDX1P47902 ABCB5-202ENST00000404938 5811 ntAPPRIS P1 TSL 1 (best) BASIC4.27□□□□□ -1.73
CDX1P47902 ELAVL4-203ENST00000371821 3349 ntTSL 5 BASIC4.27□□□□□ -1.73
CDX1P47902 PPP1R9A-207ENST00000433881 9928 ntAPPRIS P1 TSL 5 BASIC4.27□□□□□ -1.73
CDX1P47902 OR6C4-203ENST00000641851 4989 ntAPPRIS P1 BASIC4.27□□□□□ -1.73
CDX1P47902 C4orf17-204ENST00000514652 2542 ntAPPRIS ALT2 TSL 5 BASIC4.27□□□□□ -1.73
CDX1P47902 SLC9C1-201ENST00000305815 4172 ntAPPRIS P3 TSL 2 BASIC4.27□□□□□ -1.73
CDX1P47902 DLGAP1-AS2-202ENST00000573177 1388 ntBASIC4.27□□□□□ -1.73
CDX1P47902 BCLAF1P2-201ENST00000624956 2609 ntBASIC4.26□□□□□ -1.73
CDX1P47902 CYP4Z2P-201ENST00000423332 1512 ntBASIC4.26□□□□□ -1.73
CDX1P47902 AC046144.1-201ENST00000478559 1853 ntBASIC4.26□□□□□ -1.73
CDX1P47902 ZNF681-201ENST00000402377 6497 ntAPPRIS P1 TSL 1 (best) BASIC4.26□□□□□ -1.73
CDX1P47902 SDC2-204ENST00000519914 1318 ntTSL 2 BASIC4.26□□□□□ -1.73
CDX1P47902 CSMD3-203ENST00000343508 13018 ntTSL 1 (best) BASIC4.26□□□□□ -1.73
CDX1P47902 LEPROT-206ENST00000613538 4625 ntTSL 1 (best) BASIC4.26□□□□□ -1.73
CDX1P47902 STXBP4-202ENST00000398391 2160 ntTSL 1 (best) BASIC4.26□□□□□ -1.73
CDX1P47902 LINC02261-201ENST00000512873 2802 ntTSL 2 BASIC4.26□□□□□ -1.73
CDX1P47902 HOMER1-201ENST00000282260 774 ntTSL 1 (best) BASIC4.26□□□□□ -1.73
CDX1P47902 RNA5SP326-201ENST00000363209 110 ntBASIC4.26□□□□□ -1.73
CDX1P47902 SNORA11C-201ENST00000408532 129 ntBASIC4.26□□□□□ -1.73
CDX1P47902 RNU2-65P-201ENST00000410162 185 ntBASIC4.26□□□□□ -1.73
CDX1P47902 ARPP21-AS1-201ENST00000415706 542 ntTSL 4 BASIC4.26□□□□□ -1.73
CDX1P47902 SLC35E1P1-201ENST00000419313 864 ntBASIC4.26□□□□□ -1.73
CDX1P47902 GNRH1-202ENST00000421054 470 ntAPPRIS P1 TSL 1 (best) BASIC4.26□□□□□ -1.73
CDX1P47902 AL355433.1-201ENST00000422804 300 ntBASIC4.26□□□□□ -1.73
CDX1P47902 AC008164.1-201ENST00000423925 564 ntTSL 4 BASIC4.26□□□□□ -1.73
CDX1P47902 GTF2IP2-201ENST00000424290 697 ntBASIC4.26□□□□□ -1.73
CDX1P47902 RAB3GAP1-202ENST00000425393 1139 ntTSL 2 BASIC4.26□□□□□ -1.73
CDX1P47902 AL031736.2-201ENST00000426573 787 ntBASIC4.26□□□□□ -1.73
CDX1P47902 SDR42E1P3-201ENST00000438345 502 ntBASIC4.26□□□□□ -1.73
CDX1P47902 RPS11P7-201ENST00000442125 465 ntBASIC4.26□□□□□ -1.73
CDX1P47902 LINC01359-203ENST00000444349 381 ntTSL 5 BASIC4.26□□□□□ -1.73
CDX1P47902 IGBP1P3-201ENST00000447449 1000 ntBASIC4.26□□□□□ -1.73
CDX1P47902 AC005002.1-201ENST00000447458 540 ntBASIC4.26□□□□□ -1.73
CDX1P47902 MYO5BP2-201ENST00000449815 1277 ntBASIC4.26□□□□□ -1.73
CDX1P47902 AL672138.1-201ENST00000450604 1015 ntBASIC4.26□□□□□ -1.73
CDX1P47902 CCNB1IP1P3-201ENST00000454702 829 ntBASIC4.26□□□□□ -1.73
CDX1P47902 AC008280.2-201ENST00000455473 307 ntBASIC4.26□□□□□ -1.73
CDX1P47902 AL445433.1-201ENST00000457507 257 ntBASIC4.26□□□□□ -1.73
CDX1P47902 AC092905.1-201ENST00000467527 949 ntBASIC4.26□□□□□ -1.73
CDX1P47902 PTPN20-212ENST00000502254 599 ntTSL 1 (best) BASIC4.26□□□□□ -1.73
CDX1P47902 RPL37-204ENST00000508493 553 ntAPPRIS ALT1 TSL 1 (best) BASIC4.26□□□□□ -1.73
Retrieved 100 of 98,524 protein–RNA pairs in 96 ms