Protein–RNA interactions for Protein: P02458

COL2A1, Collagen alpha-1(II) chain, humanhuman

Predicted RBP Predictions only

Length 1,487 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL2A1P02458 AL672167.1-204ENST00000641875 3017 ntBASIC5.16□□□□□ -1.58
COL2A1P02458 NCOA1-206ENST00000407230 4745 ntTSL 1 (best) BASIC5.15□□□□□ -1.58
COL2A1P02458 INPP4B-201ENST00000262992 3741 ntAPPRIS P1 TSL 5 BASIC5.15□□□□□ -1.58
COL2A1P02458 PARD3B-212ENST00000613457 7559 ntTSL 5 BASIC5.15□□□□□ -1.58
COL2A1P02458 SPART-201ENST00000355182 4820 ntAPPRIS P1 TSL 5 BASIC5.15□□□□□ -1.58
COL2A1P02458 TET1P1-201ENST00000426627 2301 ntBASIC5.15□□□□□ -1.58
COL2A1P02458 FAM19A2-215ENST00000551619 2718 ntAPPRIS P1 TSL 2 BASIC5.15□□□□□ -1.58
COL2A1P02458 DOCK7-211ENST00000634264 6303 ntAPPRIS ALT2 TSL 5 BASIC5.15□□□□□ -1.58
COL2A1P02458 KCNU1-201ENST00000399881 3695 ntAPPRIS P1 TSL 2 BASIC5.15□□□□□ -1.58
COL2A1P02458 RNU1-14P-201ENST00000362759 152 ntBASIC5.15□□□□□ -1.58
COL2A1P02458 SF3B1-202ENST00000409915 600 ntTSL 2 BASIC5.15□□□□□ -1.58
COL2A1P02458 AMMECR1LP1-201ENST00000415152 841 ntBASIC5.15□□□□□ -1.58
COL2A1P02458 AL356095.1-201ENST00000417217 199 ntBASIC5.15□□□□□ -1.58
COL2A1P02458 MFSD13B-201ENST00000420133 1290 ntBASIC5.15□□□□□ -1.58
COL2A1P02458 DPYD-AS2-201ENST00000422259 788 ntTSL 3 BASIC5.15□□□□□ -1.58
COL2A1P02458 MTND2P11-201ENST00000423638 648 ntBASIC5.15□□□□□ -1.58
COL2A1P02458 AC091390.3-201ENST00000426478 338 ntBASIC5.15□□□□□ -1.58
COL2A1P02458 CDY14P-201ENST00000431260 1014 ntBASIC5.15□□□□□ -1.58
COL2A1P02458 AC005828.1-201ENST00000431604 524 ntTSL 5 BASIC5.15□□□□□ -1.58
COL2A1P02458 CDY12P-201ENST00000440679 1015 ntBASIC5.15□□□□□ -1.58
COL2A1P02458 AL512326.1-201ENST00000443050 721 ntBASIC5.15□□□□□ -1.58
COL2A1P02458 CDY13P-201ENST00000445813 1015 ntBASIC5.15□□□□□ -1.58
COL2A1P02458 CDY23P-201ENST00000451661 1014 ntBASIC5.15□□□□□ -1.58
COL2A1P02458 AL355613.1-201ENST00000451856 480 ntTSL 2 BASIC5.15□□□□□ -1.58
COL2A1P02458 LINC01158-205ENST00000458253 747 ntTSL 5 BASIC5.15□□□□□ -1.58
COL2A1P02458 LINC02488-201ENST00000504287 652 ntTSL 2 BASIC5.15□□□□□ -1.58
COL2A1P02458 LINC01088-208ENST00000511895 795 ntTSL 2 BASIC5.15□□□□□ -1.58
COL2A1P02458 SNORA31.9-201ENST00000516429 84 ntBASIC5.15□□□□□ -1.58
COL2A1P02458 RNA5SP49-201ENST00000516450 115 ntBASIC5.15□□□□□ -1.58
COL2A1P02458 AC027701.1-201ENST00000520155 823 ntTSL 3 BASIC5.15□□□□□ -1.58
COL2A1P02458 CARD18-202ENST00000530950 652 ntAPPRIS P1 TSL 5 BASIC5.15□□□□□ -1.58
COL2A1P02458 ANP32E-205ENST00000533654 908 ntTSL 2 BASIC5.15□□□□□ -1.58
COL2A1P02458 AC004801.3-201ENST00000547602 962 ntTSL 1 (best) BASIC5.15□□□□□ -1.58
COL2A1P02458 AL355075.3-201ENST00000554678 492 ntTSL 5 BASIC5.15□□□□□ -1.58
COL2A1P02458 AL357172.1-201ENST00000556016 593 ntTSL 3 BASIC5.15□□□□□ -1.58
COL2A1P02458 AC234782.5-201ENST00000617723 324 ntBASIC5.15□□□□□ -1.58
COL2A1P02458 AC092683.2-203ENST00000618807 788 ntTSL 5 BASIC5.15□□□□□ -1.58
COL2A1P02458 AL356863.1-201ENST00000623378 1080 ntBASIC5.15□□□□□ -1.58
COL2A1P02458 AC007546.2-201ENST00000623996 360 ntBASIC5.15□□□□□ -1.58
COL2A1P02458 AL133243.3-201ENST00000617415 3004 ntBASIC5.15□□□□□ -1.58
COL2A1P02458 HGF-202ENST00000354224 1425 ntTSL 1 (best) BASIC5.15□□□□□ -1.58
COL2A1P02458 NXPH1-205ENST00000602349 1953 ntBASIC5.15□□□□□ -1.58
COL2A1P02458 ATP13A4-203ENST00000392443 4016 ntTSL 5 BASIC5.15□□□□□ -1.58
COL2A1P02458 MUC12-206ENST00000536621 16321 ntAPPRIS P2 TSL 5 BASIC5.15□□□□□ -1.58
COL2A1P02458 SKIL-201ENST00000259119 3057 ntAPPRIS P1 TSL 1 (best) BASIC5.15□□□□□ -1.58
COL2A1P02458 FGF12-204ENST00000445105 5406 ntTSL 1 (best) BASIC5.15□□□□□ -1.59
COL2A1P02458 KRR1-201ENST00000229214 10118 ntAPPRIS P1 TSL 1 (best) BASIC5.15□□□□□ -1.59
COL2A1P02458 MYBPC1-205ENST00000536007 3512 ntAPPRIS ALT2 TSL 1 (best) BASIC5.15□□□□□ -1.59
COL2A1P02458 MYBPC1-206ENST00000541119 3533 ntAPPRIS ALT2 TSL 1 (best) BASIC5.15□□□□□ -1.59
COL2A1P02458 RIMS2-205ENST00000436393 4384 ntTSL 2 BASIC5.15□□□□□ -1.59
COL2A1P02458 FIGN-201ENST00000333129 9536 ntAPPRIS P1 TSL 1 (best) BASIC5.15□□□□□ -1.59
COL2A1P02458 LINC01013-205ENST00000458028 1345 ntTSL 1 (best) BASIC5.15□□□□□ -1.59
COL2A1P02458 MECOM-219ENST00000628990 4835 ntAPPRIS P3 TSL 1 (best) BASIC5.15□□□□□ -1.59
COL2A1P02458 AKAP4-201ENST00000358526 2881 ntTSL 1 (best) BASIC5.15□□□□□ -1.59
COL2A1P02458 TMEM255A-202ENST00000371352 2879 ntTSL 2 BASIC5.15□□□□□ -1.59
COL2A1P02458 TAOK3-202ENST00000419821 4301 ntAPPRIS P1 TSL 1 (best) BASIC5.15□□□□□ -1.59
COL2A1P02458 C12orf50-203ENST00000550553 1525 ntTSL 5 BASIC5.15□□□□□ -1.59
COL2A1P02458 FOXP2-226ENST00000635638 2598 ntAPPRIS ALT1 TSL 5 BASIC5.14□□□□□ -1.59
COL2A1P02458 BRCA1-203ENST00000357654 7094 ntAPPRIS P1 TSL 1 (best) BASIC5.14□□□□□ -1.59
COL2A1P02458 RUFY2-201ENST00000265865 2033 ntTSL 2 BASIC5.14□□□□□ -1.59
COL2A1P02458 AC013470.3-201ENST00000420252 1194 ntBASIC5.14□□□□□ -1.59
COL2A1P02458 RPL23AP38-201ENST00000423801 469 ntBASIC5.14□□□□□ -1.59
COL2A1P02458 LINC02529-201ENST00000429657 772 ntTSL 3 BASIC5.14□□□□□ -1.59
COL2A1P02458 AL390879.2-204ENST00000438602 582 ntTSL 3 BASIC5.14□□□□□ -1.59
COL2A1P02458 AL139275.2-201ENST00000444731 539 ntTSL 3 BASIC5.14□□□□□ -1.59
COL2A1P02458 KCNQ5-IT1-201ENST00000445310 563 ntTSL 2 BASIC5.14□□□□□ -1.59
COL2A1P02458 RPL6P5-201ENST00000445678 828 ntBASIC5.14□□□□□ -1.59
COL2A1P02458 MTND2P39-201ENST00000457230 764 ntBASIC5.14□□□□□ -1.59
COL2A1P02458 MGC32805-205ENST00000510972 1424 ntTSL 1 (best) BASIC5.14□□□□□ -1.59
COL2A1P02458 RNA5SP73-201ENST00000516744 108 ntBASIC5.14□□□□□ -1.59
COL2A1P02458 AC023632.4-201ENST00000517783 191 ntBASIC5.14□□□□□ -1.59
COL2A1P02458 CUL2-209ENST00000537177 4271 ntTSL 5 BASIC5.14□□□□□ -1.59
COL2A1P02458 LINC00254-201ENST00000563416 662 ntTSL 3 BASIC5.14□□□□□ -1.59
COL2A1P02458 AC090125.1-201ENST00000581541 493 ntTSL 3 BASIC5.14□□□□□ -1.59
COL2A1P02458 SEC31A-201ENST00000264405 3447 ntTSL 2 BASIC5.14□□□□□ -1.59
COL2A1P02458 KCNT2-206ENST00000609185 3622 ntTSL 1 (best) BASIC5.14□□□□□ -1.59
COL2A1P02458 AP000641.1-201ENST00000531988 1639 ntBASIC5.14□□□□□ -1.59
COL2A1P02458 HGF-201ENST00000222390 5989 ntAPPRIS P3 TSL 1 (best) BASIC5.14□□□□□ -1.59
COL2A1P02458 FAM26D-202ENST00000368597 1311 ntTSL 1 (best) BASIC5.14□□□□□ -1.59
COL2A1P02458 ZNF334-203ENST00000593880 2635 ntTSL 1 (best) BASIC5.14□□□□□ -1.59
COL2A1P02458 MEIOB-201ENST00000325962 1694 ntAPPRIS P1 TSL 5 BASIC5.14□□□□□ -1.59
COL2A1P02458 MDN1-201ENST00000369393 18413 ntAPPRIS P1 TSL 1 (best) BASIC5.14□□□□□ -1.59
COL2A1P02458 ERGIC2-201ENST00000360150 5014 ntAPPRIS P1 TSL 1 (best) BASIC5.14□□□□□ -1.59
COL2A1P02458 SPRR2C-201ENST00000290702 219 ntBASIC5.13□□□□□ -1.59
COL2A1P02458 SNORA62.3-201ENST00000365110 153 ntBASIC5.13□□□□□ -1.59
COL2A1P02458 Y_RNA.333-201ENST00000365274 102 ntBASIC5.13□□□□□ -1.59
COL2A1P02458 SNORA9-201ENST00000384215 133 ntBASIC5.13□□□□□ -1.59
COL2A1P02458 RN7SKP235-201ENST00000410662 305 ntBASIC5.13□□□□□ -1.59
COL2A1P02458 AC013410.2-201ENST00000422627 201 ntBASIC5.13□□□□□ -1.59
COL2A1P02458 AL513128.1-201ENST00000422675 469 ntTSL 5 BASIC5.13□□□□□ -1.59
COL2A1P02458 RNA5SP246-201ENST00000458909 119 ntBASIC5.13□□□□□ -1.59
COL2A1P02458 AC008591.1-201ENST00000503616 631 ntTSL 3 BASIC5.13□□□□□ -1.59
COL2A1P02458 IGLVVI-25-1-201ENST00000521893 249 ntBASIC5.13□□□□□ -1.59
COL2A1P02458 OR5BC1P-201ENST00000529327 739 ntBASIC5.13□□□□□ -1.59
COL2A1P02458 PRH1-206ENST00000543626 710 ntAPPRIS P2 TSL 5 BASIC5.13□□□□□ -1.59
COL2A1P02458 AC009803.3-201ENST00000548457 540 ntTSL 3 BASIC5.13□□□□□ -1.59
COL2A1P02458 AL049779.1-201ENST00000553306 670 ntTSL 2 BASIC5.13□□□□□ -1.59
COL2A1P02458 PWRN1-202ENST00000562501 642 ntTSL 3 BASIC5.13□□□□□ -1.59
COL2A1P02458 RN7SL600P-201ENST00000581811 299 ntBASIC5.13□□□□□ -1.59
COL2A1P02458 AC022916.2-201ENST00000590144 559 ntTSL 4 BASIC5.13□□□□□ -1.59
Retrieved 100 of 98,524 protein–RNA pairs in 100.9 ms