Protein–RNA interactions for Protein: O15116

LSM1, U6 snRNA-associated Sm-like protein LSm1, humanhuman

Known RBP Predictions only

Length 133 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LSM1O15116 PCDH15-203ENST00000373955 4230 ntTSL 1 (best) BASIC4.51□□□□□ -1.69
LSM1O15116 LINC00550-201ENST00000629293 3434 ntTSL 1 (best) BASIC4.5□□□□□ -1.69
LSM1O15116 MTFR1-203ENST00000458689 2500 ntTSL 1 (best) BASIC4.5□□□□□ -1.69
LSM1O15116 ACKR4-201ENST00000249887 1914 ntAPPRIS P1 TSL 1 (best) BASIC4.5□□□□□ -1.69
LSM1O15116 EOGT-210ENST00000615922 1931 ntBASIC4.5□□□□□ -1.69
LSM1O15116 AL355852.1-201ENST00000454081 1771 ntBASIC4.5□□□□□ -1.69
LSM1O15116 CENPE-208ENST00000611174 8260 ntTSL 5 BASIC4.5□□□□□ -1.69
LSM1O15116 CNOT6LP1-201ENST00000559681 1462 ntBASIC4.5□□□□□ -1.69
LSM1O15116 AL136164.3-201ENST00000624429 3978 ntBASIC4.5□□□□□ -1.69
LSM1O15116 OR9Q2-202ENST00000641291 3774 ntAPPRIS P1 BASIC4.5□□□□□ -1.69
LSM1O15116 ASAH2-201ENST00000329428 2184 ntTSL 1 (best) BASIC4.5□□□□□ -1.69
LSM1O15116 AL442639.1-201ENST00000625030 1899 ntBASIC4.5□□□□□ -1.69
LSM1O15116 DDX20-202ENST00000475700 4332 ntTSL 2 BASIC4.5□□□□□ -1.69
LSM1O15116 AL031985.3-201ENST00000565390 2449 ntBASIC4.5□□□□□ -1.69
LSM1O15116 ANK3-202ENST00000355288 3811 ntTSL 1 (best) BASIC4.5□□□□□ -1.69
LSM1O15116 BANF2-202ENST00000377805 444 ntAPPRIS P1 TSL 1 (best) BASIC4.5□□□□□ -1.69
LSM1O15116 SH3BGR-203ENST00000380634 816 ntTSL 5 BASIC4.5□□□□□ -1.69
LSM1O15116 CHMP1B2P-201ENST00000399581 597 ntBASIC4.5□□□□□ -1.69
LSM1O15116 VDAC1P9-201ENST00000412766 841 ntBASIC4.5□□□□□ -1.69
LSM1O15116 RPL6P29-201ENST00000414863 865 ntBASIC4.5□□□□□ -1.69
LSM1O15116 TRAPPC2P10-201ENST00000415662 323 ntBASIC4.5□□□□□ -1.69
LSM1O15116 MTCYBP7-201ENST00000419540 1134 ntBASIC4.5□□□□□ -1.69
LSM1O15116 AC093162.1-201ENST00000419682 124 ntBASIC4.5□□□□□ -1.69
LSM1O15116 ARAFP1-201ENST00000422172 605 ntBASIC4.5□□□□□ -1.69
LSM1O15116 AC004594.1-217ENST00000422260 325 ntTSL 2 BASIC4.5□□□□□ -1.69
LSM1O15116 RPL21P43-201ENST00000425440 472 ntBASIC4.5□□□□□ -1.69
LSM1O15116 AL353748.1-201ENST00000440753 474 ntBASIC4.5□□□□□ -1.69
LSM1O15116 LINC01034-201ENST00000448806 277 ntTSL 3 BASIC4.5□□□□□ -1.69
LSM1O15116 TRY2P-201ENST00000448860 689 ntBASIC4.5□□□□□ -1.69
LSM1O15116 Z99916.1-201ENST00000454253 482 ntTSL 3 BASIC4.5□□□□□ -1.69
LSM1O15116 RPS5P7-201ENST00000456664 608 ntBASIC4.5□□□□□ -1.69
LSM1O15116 IGHV3-63-201ENST00000518422 341 ntBASIC4.5□□□□□ -1.69
LSM1O15116 CYCSP28-201ENST00000534284 321 ntBASIC4.5□□□□□ -1.69
LSM1O15116 AC087888.1-201ENST00000550884 1254 ntBASIC4.5□□□□□ -1.69
LSM1O15116 LINC02326-201ENST00000552028 540 ntTSL 3 BASIC4.5□□□□□ -1.69
LSM1O15116 AL110505.1-201ENST00000557062 522 ntTSL 3 BASIC4.5□□□□□ -1.69
LSM1O15116 DISC1FP1-202ENST00000562245 774 ntTSL 3 BASIC4.5□□□□□ -1.69
LSM1O15116 GS1-279B7.1-203ENST00000565520 609 ntTSL 5 BASIC4.5□□□□□ -1.69
LSM1O15116 AC018552.3-201ENST00000567416 561 ntBASIC4.5□□□□□ -1.69
LSM1O15116 AC087763.1-201ENST00000603391 286 ntBASIC4.5□□□□□ -1.69
LSM1O15116 AC010200.2-201ENST00000605098 235 ntBASIC4.5□□□□□ -1.69
LSM1O15116 AC073137.1-201ENST00000605636 634 ntBASIC4.5□□□□□ -1.69
LSM1O15116 AC020634.1-201ENST00000608701 549 ntBASIC4.5□□□□□ -1.69
LSM1O15116 AL008635.1-201ENST00000609073 385 ntTSL 3 BASIC4.5□□□□□ -1.69
LSM1O15116 MIR4727-201ENST00000622232 55 ntBASIC4.5□□□□□ -1.69
LSM1O15116 RGS5-201ENST00000313961 5862 ntAPPRIS P3 TSL 1 (best) BASIC4.5□□□□□ -1.69
LSM1O15116 LIPI-201ENST00000344577 1652 ntAPPRIS P2 TSL 1 (best) BASIC4.5□□□□□ -1.69
LSM1O15116 OR52E4-202ENST00000641726 2947 ntAPPRIS P1 BASIC4.5□□□□□ -1.69
LSM1O15116 CFAP47-202ENST00000313548 1549 ntAPPRIS ALT2 TSL 1 (best) BASIC4.5□□□□□ -1.69
LSM1O15116 AL451142.2-201ENST00000429076 2090 ntBASIC4.5□□□□□ -1.69
LSM1O15116 AC016588.2-201ENST00000632484 3021 ntBASIC4.5□□□□□ -1.69
LSM1O15116 HSPD1P14-201ENST00000432666 1618 ntBASIC4.5□□□□□ -1.69
LSM1O15116 MTRR-202ENST00000440940 3215 ntAPPRIS P1 TSL 1 (best) BASIC4.5□□□□□ -1.69
LSM1O15116 LINC01568-202ENST00000555721 1325 ntTSL 1 (best) BASIC4.49□□□□□ -1.69
LSM1O15116 EMSY-207ENST00000525919 4074 ntAPPRIS ALT1 TSL 1 (best) BASIC4.49□□□□□ -1.69
LSM1O15116 SAMMSON-226ENST00000642089 1582 ntBASIC4.49□□□□□ -1.69
LSM1O15116 UTP20-201ENST00000261637 9025 ntAPPRIS P1 TSL 1 (best) BASIC4.49□□□□□ -1.69
LSM1O15116 DDX60L-209ENST00000511577 6781 ntAPPRIS P1 TSL 5 BASIC4.49□□□□□ -1.69
LSM1O15116 ELAVL4-206ENST00000371827 3775 ntAPPRIS ALT1 TSL 1 (best) BASIC4.49□□□□□ -1.69
LSM1O15116 SLAIN1-204ENST00000358679 2075 ntAPPRIS P3 TSL 2 BASIC4.49□□□□□ -1.69
LSM1O15116 RNA5SP305-201ENST00000362665 119 ntBASIC4.49□□□□□ -1.69
LSM1O15116 RNU1-20P-201ENST00000363314 162 ntBASIC4.49□□□□□ -1.69
LSM1O15116 TEX36-201ENST00000368821 922 ntAPPRIS P3 TSL 1 (best) BASIC4.49□□□□□ -1.69
LSM1O15116 TUBD1-204ENST00000376094 1154 ntTSL 1 (best) BASIC4.49□□□□□ -1.69
LSM1O15116 MIR93-201ENST00000385024 80 ntBASIC4.49□□□□□ -1.69
LSM1O15116 CCL7-202ENST00000394627 696 ntTSL 3 BASIC4.49□□□□□ -1.69
LSM1O15116 AL603962.1-201ENST00000413148 436 ntTSL 5 BASIC4.49□□□□□ -1.69
LSM1O15116 LINC01829-201ENST00000414404 571 ntTSL 2 BASIC4.49□□□□□ -1.69
LSM1O15116 AL391219.1-201ENST00000422570 483 ntBASIC4.49□□□□□ -1.69
LSM1O15116 AC114814.3-201ENST00000449362 663 ntTSL 2 BASIC4.49□□□□□ -1.69
LSM1O15116 AC104781.1-201ENST00000449838 397 ntTSL 3 BASIC4.49□□□□□ -1.69
LSM1O15116 AL157359.1-201ENST00000449840 424 ntTSL 3 BASIC4.49□□□□□ -1.69
LSM1O15116 ATP5G1P3-201ENST00000463301 410 ntBASIC4.49□□□□□ -1.69
LSM1O15116 AC090142.1-201ENST00000465776 462 ntBASIC4.49□□□□□ -1.69
LSM1O15116 RN7SL41P-201ENST00000476144 297 ntBASIC4.49□□□□□ -1.69
LSM1O15116 AC106872.2-201ENST00000494303 480 ntBASIC4.49□□□□□ -1.69
LSM1O15116 AC092994.1-201ENST00000498604 279 ntTSL 3 BASIC4.49□□□□□ -1.69
LSM1O15116 SCARNA22-201ENST00000503991 125 ntBASIC4.49□□□□□ -1.69
LSM1O15116 F11-AS1-201ENST00000505103 1178 ntTSL 1 (best) BASIC4.49□□□□□ -1.69
LSM1O15116 MTCO3P42-201ENST00000509488 518 ntBASIC4.49□□□□□ -1.69
LSM1O15116 AC093763.1-201ENST00000512464 699 ntTSL 3 BASIC4.49□□□□□ -1.69
LSM1O15116 MTCO3P39-201ENST00000514812 518 ntBASIC4.49□□□□□ -1.69
LSM1O15116 RNA5SP446-201ENST00000515955 82 ntBASIC4.49□□□□□ -1.69
LSM1O15116 RNU6ATAC24P-201ENST00000516811 135 ntBASIC4.49□□□□□ -1.69
LSM1O15116 AP000873.2-205ENST00000529031 435 ntTSL 2 BASIC4.49□□□□□ -1.69
LSM1O15116 DEFB109D-201ENST00000529497 240 ntBASIC4.49□□□□□ -1.69
LSM1O15116 NOVA1-AS1-203ENST00000552101 468 ntTSL 3 BASIC4.49□□□□□ -1.69
LSM1O15116 AC016987.1-201ENST00000558587 499 ntTSL 2 BASIC4.49□□□□□ -1.69
LSM1O15116 LINC02170-201ENST00000561519 555 ntTSL 4 BASIC4.49□□□□□ -1.69
LSM1O15116 AC093330.1-201ENST00000583326 568 ntTSL 4 BASIC4.49□□□□□ -1.69
LSM1O15116 RPL38-208ENST00000584577 344 ntAPPRIS ALT1 TSL 3 BASIC4.49□□□□□ -1.69
LSM1O15116 SATB1-AS1-222ENST00000600177 751 ntTSL 5 BASIC4.49□□□□□ -1.69
LSM1O15116 MIR99AHG-211ENST00000602323 475 ntTSL 5 BASIC4.49□□□□□ -1.69
LSM1O15116 AC087633.2-201ENST00000618611 725 ntTSL 3 BASIC4.49□□□□□ -1.69
LSM1O15116 AC091905.4-201ENST00000623432 202 ntBASIC4.49□□□□□ -1.69
LSM1O15116 AP002799.1-201ENST00000623552 423 ntBASIC4.49□□□□□ -1.69
LSM1O15116 SLC38A11-204ENST00000409662 1542 ntAPPRIS P2 TSL 1 (best) BASIC4.49□□□□□ -1.69
LSM1O15116 AC090017.1-201ENST00000548612 1779 ntBASIC4.49□□□□□ -1.69
LSM1O15116 R3HCC1L-201ENST00000298999 3379 ntAPPRIS P1 TSL 5 BASIC4.49□□□□□ -1.69
LSM1O15116 ATG12-208ENST00000509910 4333 ntAPPRIS P1 TSL 1 (best) BASIC4.49□□□□□ -1.69
Retrieved 100 of 98,524 protein–RNA pairs in 101.4 ms