Protein–RNA interactions for Protein: Q9NUW8

TDP1, Tyrosyl-DNA phosphodiesterase 1, humanhuman

Predictions only

Length 608 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TDP1Q9NUW8 LINC00969-211ENST00000438608 525 ntTSL 5 BASIC5.62□□□□□ -1.51
TDP1Q9NUW8 HMGB1P48-201ENST00000446155 598 ntBASIC5.62□□□□□ -1.51
TDP1Q9NUW8 GAPDHP25-201ENST00000447061 1001 ntBASIC5.62□□□□□ -1.51
TDP1Q9NUW8 AL133477.1-201ENST00000457472 514 ntBASIC5.62□□□□□ -1.51
TDP1Q9NUW8 VN1R5-201ENST00000472952 1239 ntAPPRIS P1 BASIC5.62□□□□□ -1.51
TDP1Q9NUW8 LINC02032-201ENST00000490465 391 ntTSL 2 BASIC5.62□□□□□ -1.51
TDP1Q9NUW8 LINC02508-201ENST00000504165 426 ntTSL 3 BASIC5.62□□□□□ -1.51
TDP1Q9NUW8 IMPA1P1-201ENST00000510718 842 ntBASIC5.62□□□□□ -1.51
TDP1Q9NUW8 AC067817.1-201ENST00000518535 356 ntTSL 2 BASIC5.62□□□□□ -1.51
TDP1Q9NUW8 IGHVIII-38-1-201ENST00000521454 282 ntBASIC5.62□□□□□ -1.51
TDP1Q9NUW8 AP001646.3-201ENST00000526305 446 ntTSL 2 BASIC5.62□□□□□ -1.51
TDP1Q9NUW8 NAV2-AS1-201ENST00000526642 660 ntTSL 3 BASIC5.62□□□□□ -1.51
TDP1Q9NUW8 AC073172.2-201ENST00000527770 571 ntTSL 4 BASIC5.62□□□□□ -1.51
TDP1Q9NUW8 AC092747.2-201ENST00000545069 983 ntBASIC5.62□□□□□ -1.51
TDP1Q9NUW8 TRDN-205ENST00000546248 1179 ntTSL 1 (best) BASIC5.62□□□□□ -1.51
TDP1Q9NUW8 AC110023.1-201ENST00000554318 457 ntTSL 3 BASIC5.62□□□□□ -1.51
TDP1Q9NUW8 OR11J2P-201ENST00000555298 907 ntBASIC5.62□□□□□ -1.51
TDP1Q9NUW8 AC131532.1-201ENST00000555596 519 ntTSL 4 BASIC5.62□□□□□ -1.51
TDP1Q9NUW8 AC087465.1-201ENST00000560574 245 ntBASIC5.62□□□□□ -1.51
TDP1Q9NUW8 AC009303.2-201ENST00000585381 1083 ntTSL 3 BASIC5.62□□□□□ -1.51
TDP1Q9NUW8 AC060780.2-201ENST00000589047 198 ntBASIC5.62□□□□□ -1.51
TDP1Q9NUW8 LINC01676-204ENST00000595309 871 ntTSL 5 BASIC5.62□□□□□ -1.51
TDP1Q9NUW8 SETSIP-202ENST00000596516 909 ntAPPRIS P2 BASIC5.62□□□□□ -1.51
TDP1Q9NUW8 AC009163.6-201ENST00000612367 342 ntBASIC5.62□□□□□ -1.51
TDP1Q9NUW8 AL138960.1-201ENST00000613838 513 ntBASIC5.62□□□□□ -1.51
TDP1Q9NUW8 AC090510.2-201ENST00000617465 629 ntBASIC5.62□□□□□ -1.51
TDP1Q9NUW8 LAMTOR5-AS1-244ENST00000629484 780 ntTSL 5 BASIC5.62□□□□□ -1.51
TDP1Q9NUW8 ITGA9-AS1-218ENST00000630762 751 ntTSL 5 BASIC5.62□□□□□ -1.51
TDP1Q9NUW8 AC245088.3-201ENST00000634383 424 ntAPPRIS P1 BASIC5.62□□□□□ -1.51
TDP1Q9NUW8 CYP4F35P-202ENST00000636121 390 ntBASIC5.62□□□□□ -1.51
TDP1Q9NUW8 MYOCOS-202ENST00000636788 1039 ntAPPRIS ALT2 TSL 5 BASIC5.62□□□□□ -1.51
TDP1Q9NUW8 AC007671.2-201ENST00000637344 619 ntBASIC5.62□□□□□ -1.51
TDP1Q9NUW8 Z98755.1-201ENST00000407015 1384 ntBASIC5.62□□□□□ -1.51
TDP1Q9NUW8 NHSL2-204ENST00000631375 12593 ntTSL 5 BASIC5.62□□□□□ -1.51
TDP1Q9NUW8 POLK-204ENST00000504026 1484 ntTSL 1 (best) BASIC5.62□□□□□ -1.51
TDP1Q9NUW8 PIGN-239ENST00000639902 4439 ntTSL 5 BASIC5.62□□□□□ -1.51
TDP1Q9NUW8 OR8G5-203ENST00000641992 1560 ntAPPRIS P1 BASIC5.62□□□□□ -1.51
TDP1Q9NUW8 ST8SIA4-201ENST00000231461 6303 ntAPPRIS P1 TSL 1 (best) BASIC5.62□□□□□ -1.51
TDP1Q9NUW8 IPCEF1-210ENST00000519344 1621 ntAPPRIS ALT2 TSL 5 BASIC5.62□□□□□ -1.51
TDP1Q9NUW8 AC097063.1-201ENST00000426714 1797 ntBASIC5.62□□□□□ -1.51
TDP1Q9NUW8 LRRN3-204ENST00000451085 3725 ntAPPRIS P1 TSL 2 BASIC5.62□□□□□ -1.51
TDP1Q9NUW8 PROS2P-201ENST00000474651 1951 ntBASIC5.62□□□□□ -1.51
TDP1Q9NUW8 ARHGAP42P1-201ENST00000507474 1976 ntBASIC5.62□□□□□ -1.51
TDP1Q9NUW8 TERB1-203ENST00000558713 2257 ntAPPRIS P1 TSL 5 BASIC5.62□□□□□ -1.51
TDP1Q9NUW8 PCGF5-205ENST00000614189 7037 ntAPPRIS P1 TSL 1 (best) BASIC5.62□□□□□ -1.51
TDP1Q9NUW8 SLC26A7-201ENST00000276609 5263 ntAPPRIS P1 TSL 1 (best) BASIC5.61□□□□□ -1.51
TDP1Q9NUW8 FAM205BP-203ENST00000455647 3752 ntTSL 1 (best) BASIC5.61□□□□□ -1.51
TDP1Q9NUW8 ALCAM-205ENST00000472644 4189 ntTSL 1 (best) BASIC5.61□□□□□ -1.51
TDP1Q9NUW8 EPB41L2-226ENST00000530757 4360 ntTSL 2 BASIC5.61□□□□□ -1.51
TDP1Q9NUW8 KCNC4-201ENST00000369787 18750 ntAPPRIS P3 TSL 1 (best) BASIC5.61□□□□□ -1.51
TDP1Q9NUW8 MUC17-201ENST00000306151 14247 ntAPPRIS P1 TSL 1 (best) BASIC5.61□□□□□ -1.51
TDP1Q9NUW8 CFL2-201ENST00000298159 6747 ntAPPRIS P1 TSL 1 (best) BASIC5.61□□□□□ -1.51
TDP1Q9NUW8 PCGF5-201ENST00000336126 7018 ntAPPRIS P1 TSL 1 (best) BASIC5.61□□□□□ -1.51
TDP1Q9NUW8 SPANXN1-201ENST00000370493 1276 ntAPPRIS P1 TSL 1 (best) BASIC5.61□□□□□ -1.51
TDP1Q9NUW8 TRGV11-201ENST00000390340 463 ntAPPRIS P1 BASIC5.61□□□□□ -1.51
TDP1Q9NUW8 AC093719.1-202ENST00000392735 373 ntBASIC5.61□□□□□ -1.51
TDP1Q9NUW8 IL6-203ENST00000401651 539 ntTSL 2 BASIC5.61□□□□□ -1.51
TDP1Q9NUW8 OR4K12P-201ENST00000406538 961 ntBASIC5.61□□□□□ -1.51
TDP1Q9NUW8 RN7SKP125-201ENST00000410481 302 ntBASIC5.61□□□□□ -1.51
TDP1Q9NUW8 RNU6-77P-201ENST00000410554 91 ntBASIC5.61□□□□□ -1.51
TDP1Q9NUW8 TRGV6-201ENST00000417928 299 ntBASIC5.61□□□□□ -1.51
TDP1Q9NUW8 QRSL1P2-201ENST00000418582 964 ntBASIC5.61□□□□□ -1.51
TDP1Q9NUW8 RNF150-202ENST00000420921 3673 ntTSL 2 BASIC5.61□□□□□ -1.51
TDP1Q9NUW8 MORF4L2-205ENST00000423833 717 ntTSL 5 BASIC5.61□□□□□ -1.51
TDP1Q9NUW8 HNRNPA3P4-201ENST00000427514 803 ntBASIC5.61□□□□□ -1.51
TDP1Q9NUW8 RPL7P56-201ENST00000429441 717 ntBASIC5.61□□□□□ -1.51
TDP1Q9NUW8 AC090018.1-201ENST00000434369 367 ntBASIC5.61□□□□□ -1.51
TDP1Q9NUW8 ZNF736P9Y-201ENST00000439586 1345 ntBASIC5.61□□□□□ -1.51
TDP1Q9NUW8 RPL12P3-201ENST00000440080 396 ntBASIC5.61□□□□□ -1.51
TDP1Q9NUW8 AC004160.1-211ENST00000445839 565 ntTSL 4 BASIC5.61□□□□□ -1.51
TDP1Q9NUW8 AL451164.2-201ENST00000445932 597 ntTSL 2 BASIC5.61□□□□□ -1.51
TDP1Q9NUW8 IGBP1P3-201ENST00000447449 1000 ntBASIC5.61□□□□□ -1.51
TDP1Q9NUW8 AL590764.1-201ENST00000450860 726 ntTSL 3 BASIC5.61□□□□□ -1.51
TDP1Q9NUW8 AL645937.3-201ENST00000453647 936 ntBASIC5.61□□□□□ -1.51
TDP1Q9NUW8 OTUD4-202ENST00000454497 7069 ntTSL 2 BASIC5.61□□□□□ -1.51
TDP1Q9NUW8 AZGP1P2-201ENST00000454506 345 ntBASIC5.61□□□□□ -1.51
TDP1Q9NUW8 SNORD125-201ENST00000459538 96 ntBASIC5.61□□□□□ -1.51
TDP1Q9NUW8 AC096741.1-201ENST00000472250 846 ntBASIC5.61□□□□□ -1.51
TDP1Q9NUW8 TRBV8-2-201ENST00000475637 270 ntBASIC5.61□□□□□ -1.51
TDP1Q9NUW8 AC073522.1-201ENST00000483312 377 ntBASIC5.61□□□□□ -1.51
TDP1Q9NUW8 AC010395.1-201ENST00000507627 697 ntTSL 5 BASIC5.61□□□□□ -1.51
TDP1Q9NUW8 OR5H4P-201ENST00000510851 923 ntBASIC5.61□□□□□ -1.51
TDP1Q9NUW8 OCIAD1-AS1-201ENST00000513576 265 ntTSL 3 BASIC5.61□□□□□ -1.51
TDP1Q9NUW8 MAP9-208ENST00000515654 2044 ntTSL 5 BASIC5.61□□□□□ -1.51
TDP1Q9NUW8 ADAM18-206ENST00000520772 1429 ntTSL 1 (best) BASIC5.61□□□□□ -1.51
TDP1Q9NUW8 OPRM1-223ENST00000524163 1251 ntAPPRIS ALT1 TSL 1 (best) BASIC5.61□□□□□ -1.51
TDP1Q9NUW8 AP004607.2-201ENST00000533949 322 ntBASIC5.61□□□□□ -1.51
TDP1Q9NUW8 FAXC-204ENST00000538471 941 ntTSL 1 (best) BASIC5.61□□□□□ -1.51
TDP1Q9NUW8 GAS2L3-203ENST00000539410 2229 ntAPPRIS P1 TSL 2 BASIC5.61□□□□□ -1.51
TDP1Q9NUW8 AP005901.5-201ENST00000545779 1796 ntBASIC5.61□□□□□ -1.51
TDP1Q9NUW8 AC090888.1-201ENST00000561335 1141 ntBASIC5.61□□□□□ -1.51
TDP1Q9NUW8 AC025271.2-201ENST00000566990 800 ntTSL 3 BASIC5.61□□□□□ -1.51
TDP1Q9NUW8 AC022166.1-201ENST00000567851 581 ntTSL 5 BASIC5.61□□□□□ -1.51
TDP1Q9NUW8 MIR3912-201ENST00000577566 105 ntBASIC5.61□□□□□ -1.51
TDP1Q9NUW8 AC116003.2-201ENST00000579278 748 ntTSL 2 BASIC5.61□□□□□ -1.51
TDP1Q9NUW8 AC022884.3-201ENST00000579571 248 ntBASIC5.61□□□□□ -1.51
TDP1Q9NUW8 AC015845.2-201ENST00000581805 472 ntTSL 2 BASIC5.61□□□□□ -1.51
TDP1Q9NUW8 LINC01899-203ENST00000584810 337 ntTSL 2 BASIC5.61□□□□□ -1.51
TDP1Q9NUW8 AC092296.3-201ENST00000589968 249 ntTSL 3 BASIC5.61□□□□□ -1.51
TDP1Q9NUW8 ABCA6-206ENST00000590645 1511 ntTSL 1 (best) BASIC5.61□□□□□ -1.51
Retrieved 100 of 98,524 protein–RNA pairs in 88.1 ms