Protein–RNA interactions for Protein: Q8NDV3

SMC1B, Structural maintenance of chromosomes protein 1B, humanhuman

Predictions only

Length 1,235 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMC1BQ8NDV3 EMP1-206ENST00000537612 505 ntTSL 3 BASIC6.4□□□□□ -1.38
SMC1BQ8NDV3 LINC02311-201ENST00000556144 383 ntTSL 3 BASIC6.4□□□□□ -1.38
SMC1BQ8NDV3 AL133410.1-201ENST00000574939 546 ntTSL 3 BASIC6.4□□□□□ -1.38
SMC1BQ8NDV3 MIR3667-201ENST00000581025 74 ntBASIC6.4□□□□□ -1.38
SMC1BQ8NDV3 SOX2-OT-224ENST00000595313 716 ntTSL 5 BASIC6.4□□□□□ -1.38
SMC1BQ8NDV3 TEX41-222ENST00000597173 1134 ntTSL 1 (best) BASIC6.4□□□□□ -1.38
SMC1BQ8NDV3 NCRUPAR_2.1-201ENST00000616308 99 ntBASIC6.4□□□□□ -1.38
SMC1BQ8NDV3 AL355974.3-201ENST00000617383 467 ntBASIC6.4□□□□□ -1.38
SMC1BQ8NDV3 MYOCOS-202ENST00000636788 1039 ntAPPRIS ALT2 TSL 5 BASIC6.4□□□□□ -1.38
SMC1BQ8NDV3 ZNRD1ASP-221ENST00000637794 1074 ntBASIC6.4□□□□□ -1.38
SMC1BQ8NDV3 BX649567.1-201ENST00000642071 1134 ntBASIC6.4□□□□□ -1.38
SMC1BQ8NDV3 EXTL2-201ENST00000370113 2835 ntAPPRIS P1 TSL 1 (best) BASIC6.4□□□□□ -1.38
SMC1BQ8NDV3 KSR2-201ENST00000339824 17726 ntAPPRIS P1 TSL 5 BASIC6.4□□□□□ -1.38
SMC1BQ8NDV3 CPS1-IT1-201ENST00000628368 2306 ntBASIC6.4□□□□□ -1.38
SMC1BQ8NDV3 EXOC1-201ENST00000346134 3357 ntAPPRIS P4 TSL 2 BASIC6.4□□□□□ -1.38
SMC1BQ8NDV3 ZSCAN26-201ENST00000316606 2362 ntTSL 1 (best) BASIC6.4□□□□□ -1.39
SMC1BQ8NDV3 DCTN4-201ENST00000424236 4054 ntTSL 2 BASIC6.4□□□□□ -1.39
SMC1BQ8NDV3 EEF1A1P36-201ENST00000427807 1351 ntBASIC6.4□□□□□ -1.39
SMC1BQ8NDV3 FAM229B-201ENST00000368656 2543 ntAPPRIS P1 TSL 1 (best) BASIC6.4□□□□□ -1.39
SMC1BQ8NDV3 KCNH5-201ENST00000322893 11290 ntAPPRIS P1 TSL 1 (best) BASIC6.4□□□□□ -1.39
SMC1BQ8NDV3 G3BP1-202ENST00000394123 10240 ntAPPRIS P1 TSL 1 (best) BASIC6.4□□□□□ -1.39
SMC1BQ8NDV3 RPL23AP82-206ENST00000480246 2987 ntTSL 1 (best) BASIC6.39□□□□□ -1.39
SMC1BQ8NDV3 FLJ12825-201ENST00000515617 3942 ntTSL 2 BASIC6.39□□□□□ -1.39
SMC1BQ8NDV3 SCN1A-209ENST00000635750 8299 ntAPPRIS P3 TSL 5 BASIC6.39□□□□□ -1.39
SMC1BQ8NDV3 ZNF699-203ENST00000591998 3358 ntAPPRIS P1 TSL 5 BASIC6.39□□□□□ -1.39
SMC1BQ8NDV3 MDN1-201ENST00000369393 18413 ntAPPRIS P1 TSL 1 (best) BASIC6.39□□□□□ -1.39
SMC1BQ8NDV3 ZNF177-202ENST00000589262 1920 ntAPPRIS ALT2 TSL 2 BASIC6.39□□□□□ -1.39
SMC1BQ8NDV3 RYR3-208ENST00000622037 15564 ntAPPRIS ALT2 TSL 5 BASIC6.39□□□□□ -1.39
SMC1BQ8NDV3 ZNF81-202ENST00000338637 7859 ntAPPRIS P1 TSL 3 BASIC6.39□□□□□ -1.39
SMC1BQ8NDV3 FAM3C2-201ENST00000312214 681 ntBASIC6.39□□□□□ -1.39
SMC1BQ8NDV3 OR51I1-201ENST00000380211 945 ntAPPRIS P1 BASIC6.39□□□□□ -1.39
SMC1BQ8NDV3 AL138749.1-201ENST00000397864 791 ntTSL 5 BASIC6.39□□□□□ -1.39
SMC1BQ8NDV3 IL6-206ENST00000407492 926 ntTSL 3 BASIC6.39□□□□□ -1.39
SMC1BQ8NDV3 RPS7P9-201ENST00000414704 586 ntBASIC6.39□□□□□ -1.39
SMC1BQ8NDV3 AL713851.1-201ENST00000438753 918 ntTSL 5 BASIC6.39□□□□□ -1.39
SMC1BQ8NDV3 AC007179.2-204ENST00000444001 765 ntTSL 3 BASIC6.39□□□□□ -1.39
SMC1BQ8NDV3 Z99714.1-201ENST00000450463 807 ntBASIC6.39□□□□□ -1.39
SMC1BQ8NDV3 KCNMB2-AS1-205ENST00000451742 844 ntTSL 4 BASIC6.39□□□□□ -1.39
SMC1BQ8NDV3 AP001596.1-202ENST00000452460 644 ntTSL 3 BASIC6.39□□□□□ -1.39
SMC1BQ8NDV3 MEMO1P4-201ENST00000453590 386 ntBASIC6.39□□□□□ -1.39
SMC1BQ8NDV3 AL122001.1-201ENST00000457027 370 ntBASIC6.39□□□□□ -1.39
SMC1BQ8NDV3 GIMAP2-202ENST00000474605 309 ntTSL 3 BASIC6.39□□□□□ -1.39
SMC1BQ8NDV3 PTPN20-212ENST00000502254 599 ntTSL 1 (best) BASIC6.39□□□□□ -1.39
SMC1BQ8NDV3 AC106744.2-201ENST00000513955 898 ntTSL 5 BASIC6.39□□□□□ -1.39
SMC1BQ8NDV3 RN7SKP260-201ENST00000516907 149 ntBASIC6.39□□□□□ -1.39
SMC1BQ8NDV3 RNA5SP373-201ENST00000517271 95 ntBASIC6.39□□□□□ -1.39
SMC1BQ8NDV3 AC244502.2-201ENST00000543361 851 ntBASIC6.39□□□□□ -1.39
SMC1BQ8NDV3 OR11H3P-201ENST00000554547 982 ntBASIC6.39□□□□□ -1.39
SMC1BQ8NDV3 AC084756.1-201ENST00000558237 606 ntTSL 5 BASIC6.39□□□□□ -1.39
SMC1BQ8NDV3 AGGF1P6-201ENST00000569213 976 ntBASIC6.39□□□□□ -1.39
SMC1BQ8NDV3 AP001267.4-201ENST00000602598 545 ntBASIC6.39□□□□□ -1.39
SMC1BQ8NDV3 AC084782.3-201ENST00000612282 578 ntBASIC6.39□□□□□ -1.39
SMC1BQ8NDV3 OR8G7P-201ENST00000616658 848 ntBASIC6.39□□□□□ -1.39
SMC1BQ8NDV3 FRG1HP-204ENST00000617940 757 ntBASIC6.39□□□□□ -1.39
SMC1BQ8NDV3 AL121895.2-201ENST00000619558 447 ntBASIC6.39□□□□□ -1.39
SMC1BQ8NDV3 OR52H1-202ENST00000641796 1061 ntBASIC6.39□□□□□ -1.39
SMC1BQ8NDV3 OR2J3-201ENST00000377169 1325 ntAPPRIS P1 BASIC6.39□□□□□ -1.39
SMC1BQ8NDV3 ATP5A1P1-201ENST00000454088 1321 ntBASIC6.39□□□□□ -1.39
SMC1BQ8NDV3 GPR1-201ENST00000407325 2295 ntAPPRIS P1 TSL 1 (best) BASIC6.39□□□□□ -1.39
SMC1BQ8NDV3 FILIP1-203ENST00000393004 7807 ntTSL 1 (best) BASIC6.39□□□□□ -1.39
SMC1BQ8NDV3 FAM197Y3-202ENST00000427622 2325 ntTSL 5 BASIC6.39□□□□□ -1.39
SMC1BQ8NDV3 FAM197Y7-202ENST00000433321 2325 ntTSL 2 BASIC6.39□□□□□ -1.39
SMC1BQ8NDV3 KLHL5-202ENST00000261426 3300 ntTSL 1 (best) BASIC6.39□□□□□ -1.39
SMC1BQ8NDV3 MAGI2-205ENST00000519748 3316 ntTSL 1 (best) BASIC6.39□□□□□ -1.39
SMC1BQ8NDV3 LINC00550-201ENST00000629293 3434 ntTSL 1 (best) BASIC6.39□□□□□ -1.39
SMC1BQ8NDV3 PARD3B-214ENST00000622699 7442 ntTSL 5 BASIC6.39□□□□□ -1.39
SMC1BQ8NDV3 OR8G5-203ENST00000641992 1560 ntAPPRIS P1 BASIC6.39□□□□□ -1.39
SMC1BQ8NDV3 FOXP2-207ENST00000393494 2664 ntAPPRIS P2 TSL 5 BASIC6.39□□□□□ -1.39
SMC1BQ8NDV3 SLC28A3-201ENST00000376238 4887 ntAPPRIS P1 TSL 1 (best) BASIC6.39□□□□□ -1.39
SMC1BQ8NDV3 NBPF14-211ENST00000621070 2701 ntTSL 5 BASIC6.39□□□□□ -1.39
SMC1BQ8NDV3 EED-203ENST00000351625 1696 ntTSL 1 (best) BASIC6.39□□□□□ -1.39
SMC1BQ8NDV3 KCNC4-201ENST00000369787 18750 ntAPPRIS P3 TSL 1 (best) BASIC6.39□□□□□ -1.39
SMC1BQ8NDV3 HDAC9-203ENST00000406072 4102 ntTSL 5 BASIC6.39□□□□□ -1.39
SMC1BQ8NDV3 BMPR1B-202ENST00000394931 1922 ntAPPRIS P1 TSL 1 (best) BASIC6.38□□□□□ -1.39
SMC1BQ8NDV3 AC107021.2-201ENST00000567714 2095 ntBASIC6.38□□□□□ -1.39
SMC1BQ8NDV3 OR7C1-203ENST00000641666 11711 ntAPPRIS P1 BASIC6.38□□□□□ -1.39
SMC1BQ8NDV3 IL1RAPL1-202ENST00000378993 3667 ntAPPRIS P1 TSL 1 (best) BASIC6.38□□□□□ -1.39
SMC1BQ8NDV3 ABCA10-201ENST00000269081 6362 ntAPPRIS P1 TSL 1 (best) BASIC6.38□□□□□ -1.39
SMC1BQ8NDV3 OR7G2-201ENST00000305456 1038 ntAPPRIS P2 BASIC6.38□□□□□ -1.39
SMC1BQ8NDV3 CTNNAL1-203ENST00000374594 824 ntTSL 3 BASIC6.38□□□□□ -1.39
SMC1BQ8NDV3 CCDC169-203ENST00000379862 624 ntTSL 5 BASIC6.38□□□□□ -1.39
SMC1BQ8NDV3 FCF1P5-201ENST00000406490 482 ntBASIC6.38□□□□□ -1.39
SMC1BQ8NDV3 SNORA11F-201ENST00000408237 128 ntBASIC6.38□□□□□ -1.39
SMC1BQ8NDV3 AL391807.1-202ENST00000419979 534 ntTSL 2 BASIC6.38□□□□□ -1.39
SMC1BQ8NDV3 CHIAP3-201ENST00000423668 1133 ntBASIC6.38□□□□□ -1.39
SMC1BQ8NDV3 AC234779.1-201ENST00000425910 285 ntBASIC6.38□□□□□ -1.39
SMC1BQ8NDV3 C6orf52-203ENST00000426700 493 ntAPPRIS P2 TSL 2 BASIC6.38□□□□□ -1.39
SMC1BQ8NDV3 RPL23AP4-201ENST00000427757 463 ntBASIC6.38□□□□□ -1.39
SMC1BQ8NDV3 AL139824.1-201ENST00000431983 453 ntTSL 3 BASIC6.38□□□□□ -1.39
SMC1BQ8NDV3 AL358972.1-201ENST00000434356 466 ntTSL 2 BASIC6.38□□□□□ -1.39
SMC1BQ8NDV3 AL391097.2-201ENST00000435057 485 ntTSL 3 BASIC6.38□□□□□ -1.39
SMC1BQ8NDV3 AC092170.1-201ENST00000440211 356 ntBASIC6.38□□□□□ -1.39
SMC1BQ8NDV3 AC064871.1-201ENST00000444562 427 ntTSL 3 BASIC6.38□□□□□ -1.39
SMC1BQ8NDV3 CASP3P1-201ENST00000446037 609 ntBASIC6.38□□□□□ -1.39
SMC1BQ8NDV3 SATB1-AS1-204ENST00000453361 726 ntTSL 3 BASIC6.38□□□□□ -1.39
SMC1BQ8NDV3 PSMC1P13-201ENST00000458195 985 ntBASIC6.38□□□□□ -1.39
SMC1BQ8NDV3 EIF4A2P4-201ENST00000458691 1196 ntBASIC6.38□□□□□ -1.39
SMC1BQ8NDV3 AC005410.1-202ENST00000460347 485 ntBASIC6.38□□□□□ -1.39
SMC1BQ8NDV3 RPL7P40-201ENST00000481703 745 ntBASIC6.38□□□□□ -1.39
SMC1BQ8NDV3 HMGN2P25-201ENST00000486956 268 ntBASIC6.38□□□□□ -1.39
Retrieved 100 of 98,524 protein–RNA pairs in 87.5 ms