Protein–RNA interactions for Protein: Q53GS9

USP39, U4/U6.U5 tri-snRNP-associated protein 2, humanhuman

Known RBP Predictions only

Length 565 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP39Q53GS9 DSC2-201ENST00000251081 4826 ntTSL 1 (best) BASIC5.74□□□□□ -1.49
USP39Q53GS9 NXPE4-202ENST00000424261 1687 ntTSL 1 (best) BASIC5.74□□□□□ -1.49
USP39Q53GS9 SLFN12L-205ENST00000628453 1767 ntAPPRIS ALT2 TSL 5 BASIC5.74□□□□□ -1.49
USP39Q53GS9 CSNK1G3-210ENST00000521364 2580 ntAPPRIS ALT2 TSL 2 BASIC5.74□□□□□ -1.49
USP39Q53GS9 PPP1R9A-206ENST00000433360 5369 ntTSL 1 (best) BASIC5.74□□□□□ -1.49
USP39Q53GS9 CPSF2-201ENST00000298875 13035 ntAPPRIS P1 TSL 1 (best) BASIC5.74□□□□□ -1.49
USP39Q53GS9 LZTFL1-215ENST00000536047 4342 ntTSL 2 BASIC5.74□□□□□ -1.49
USP39Q53GS9 AC025470.1-201ENST00000510053 2032 ntBASIC5.74□□□□□ -1.49
USP39Q53GS9 TCF7L2-222ENST00000627217 3680 ntTSL 1 (best) BASIC5.73□□□□□ -1.49
USP39Q53GS9 NOSTRIN-201ENST00000317647 2294 ntAPPRIS P1 TSL 1 (best) BASIC5.73□□□□□ -1.49
USP39Q53GS9 PHTF2-207ENST00000424760 1977 ntTSL 2 BASIC5.73□□□□□ -1.49
USP39Q53GS9 C1orf27-201ENST00000287859 3792 ntAPPRIS P1 TSL 1 (best) BASIC5.73□□□□□ -1.49
USP39Q53GS9 C3orf67-209ENST00000482387 2617 ntTSL 5 BASIC5.73□□□□□ -1.49
USP39Q53GS9 AC021086.1-201ENST00000499025 1569 ntTSL 3 BASIC5.73□□□□□ -1.49
USP39Q53GS9 SMAP1-206ENST00000619054 3150 ntTSL 1 (best) BASIC5.73□□□□□ -1.49
USP39Q53GS9 CSTA-201ENST00000264474 751 ntAPPRIS P1 TSL 1 (best) BASIC5.73□□□□□ -1.49
USP39Q53GS9 GKN1-201ENST00000377938 814 ntAPPRIS P1 TSL 1 (best) BASIC5.73□□□□□ -1.49
USP39Q53GS9 Y_RNA.516-201ENST00000384541 124 ntBASIC5.73□□□□□ -1.49
USP39Q53GS9 MIR137-201ENST00000385223 102 ntBASIC5.73□□□□□ -1.49
USP39Q53GS9 TRAV9-1-201ENST00000390431 338 ntAPPRIS P1 BASIC5.73□□□□□ -1.49
USP39Q53GS9 AL590084.1-201ENST00000407885 387 ntBASIC5.73□□□□□ -1.49
USP39Q53GS9 RNU6ATAC18P-201ENST00000408413 101 ntBASIC5.73□□□□□ -1.49
USP39Q53GS9 RN7SKP263-201ENST00000411194 309 ntBASIC5.73□□□□□ -1.49
USP39Q53GS9 RN7SKP273-201ENST00000411392 314 ntBASIC5.73□□□□□ -1.49
USP39Q53GS9 LINC01203-201ENST00000419566 580 ntTSL 2 BASIC5.73□□□□□ -1.49
USP39Q53GS9 AL390243.1-201ENST00000422038 708 ntTSL 2 BASIC5.73□□□□□ -1.49
USP39Q53GS9 ZDHHC20P2-201ENST00000424108 429 ntBASIC5.73□□□□□ -1.49
USP39Q53GS9 AL160175.1-201ENST00000428124 247 ntBASIC5.73□□□□□ -1.49
USP39Q53GS9 AC025038.1-201ENST00000433249 336 ntTSL 3 BASIC5.73□□□□□ -1.49
USP39Q53GS9 RBMX2P4-201ENST00000441256 376 ntBASIC5.73□□□□□ -1.49
USP39Q53GS9 GSAP-208ENST00000441833 737 ntTSL 1 (best) BASIC5.73□□□□□ -1.49
USP39Q53GS9 VPS29-202ENST00000447578 996 ntTSL 1 (best) BASIC5.73□□□□□ -1.49
USP39Q53GS9 AP000470.1-201ENST00000448063 693 ntTSL 5 BASIC5.73□□□□□ -1.49
USP39Q53GS9 AL450023.1-201ENST00000450868 751 ntBASIC5.73□□□□□ -1.49
USP39Q53GS9 AC115989.1-202ENST00000452153 1150 ntTSL 2 BASIC5.73□□□□□ -1.49
USP39Q53GS9 AL022329.1-203ENST00000453811 451 ntTSL 3 BASIC5.73□□□□□ -1.49
USP39Q53GS9 AC093157.1-204ENST00000454721 753 ntTSL 3 BASIC5.73□□□□□ -1.49
USP39Q53GS9 AL353633.1-201ENST00000458480 382 ntTSL 3 BASIC5.73□□□□□ -1.49
USP39Q53GS9 RPS4XP1-201ENST00000482189 787 ntBASIC5.73□□□□□ -1.49
USP39Q53GS9 AC016687.1-201ENST00000482574 353 ntBASIC5.73□□□□□ -1.49
USP39Q53GS9 RPS21P4-201ENST00000487122 248 ntBASIC5.73□□□□□ -1.49
USP39Q53GS9 MTAPP1-201ENST00000489154 819 ntBASIC5.73□□□□□ -1.49
USP39Q53GS9 SATB1-216ENST00000491519 1000 ntTSL 2 BASIC5.73□□□□□ -1.49
USP39Q53GS9 AC090058.1-201ENST00000498788 435 ntBASIC5.73□□□□□ -1.49
USP39Q53GS9 AC104137.1-201ENST00000503625 385 ntTSL 3 BASIC5.73□□□□□ -1.49
USP39Q53GS9 MND1-203ENST00000504860 638 ntTSL 1 (best) BASIC5.73□□□□□ -1.49
USP39Q53GS9 AC110288.1-201ENST00000517950 446 ntTSL 3 BASIC5.73□□□□□ -1.49
USP39Q53GS9 OR5V1-216ENST00000543825 1048 ntAPPRIS P1 BASIC5.73□□□□□ -1.49
USP39Q53GS9 HAGLR-211ENST00000549329 609 ntTSL 4 BASIC5.73□□□□□ -1.49
USP39Q53GS9 EEF1B2P4-201ENST00000551398 348 ntBASIC5.73□□□□□ -1.49
USP39Q53GS9 AL133370.1-201ENST00000554679 537 ntTSL 3 BASIC5.73□□□□□ -1.49
USP39Q53GS9 LINS1-207ENST00000560133 1196 ntTSL 2 BASIC5.73□□□□□ -1.49
USP39Q53GS9 C15orf41-203ENST00000562489 715 ntTSL 2 BASIC5.73□□□□□ -1.49
USP39Q53GS9 MIR3915-201ENST00000578518 97 ntBASIC5.73□□□□□ -1.49
USP39Q53GS9 AP005671.1-201ENST00000581798 463 ntTSL 3 BASIC5.73□□□□□ -1.49
USP39Q53GS9 LINC01470-205ENST00000584829 681 ntTSL 3 BASIC5.73□□□□□ -1.49
USP39Q53GS9 AC098617.1-205ENST00000595918 1032 ntTSL 5 BASIC5.73□□□□□ -1.49
USP39Q53GS9 AP002906.1-201ENST00000603405 233 ntBASIC5.73□□□□□ -1.49
USP39Q53GS9 AC106791.2-201ENST00000604680 391 ntBASIC5.73□□□□□ -1.49
USP39Q53GS9 FAM135A-202ENST00000361499 5042 ntAPPRIS ALT1 TSL 1 (best) BASIC5.73□□□□□ -1.49
USP39Q53GS9 NRDE2-201ENST00000354366 14208 ntAPPRIS P1 TSL 1 (best) BASIC5.73□□□□□ -1.49
USP39Q53GS9 TCF7L2-217ENST00000536810 3953 ntTSL 1 (best) BASIC5.73□□□□□ -1.49
USP39Q53GS9 PLCB1-211ENST00000617005 6458 ntTSL 5 BASIC5.73□□□□□ -1.49
USP39Q53GS9 NSD1-204ENST00000439151 12892 ntAPPRIS P1 TSL 1 (best) BASIC5.73□□□□□ -1.49
USP39Q53GS9 NAT1-203ENST00000517492 2280 ntAPPRIS P1 TSL 2 BASIC5.73□□□□□ -1.49
USP39Q53GS9 PATE1-201ENST00000305738 1527 ntAPPRIS P2 TSL 1 (best) BASIC5.73□□□□□ -1.49
USP39Q53GS9 FCHO2-207ENST00000512348 2700 ntTSL 2 BASIC5.73□□□□□ -1.49
USP39Q53GS9 AFM-201ENST00000226355 2059 ntAPPRIS P1 TSL 1 (best) BASIC5.73□□□□□ -1.49
USP39Q53GS9 ZNF493-203ENST00000392288 5023 ntAPPRIS P1 TSL 1 (best) BASIC5.73□□□□□ -1.49
USP39Q53GS9 AC005162.3-201ENST00000609389 3695 ntTSL 5 BASIC5.72□□□□□ -1.49
USP39Q53GS9 HSPD1P7-201ENST00000447985 1686 ntBASIC5.72□□□□□ -1.49
USP39Q53GS9 VCAN-201ENST00000265077 12625 ntAPPRIS P3 TSL 1 (best) BASIC5.72□□□□□ -1.49
USP39Q53GS9 C15orf41-201ENST00000338183 2578 ntTSL 5 BASIC5.72□□□□□ -1.49
USP39Q53GS9 PPP2R5E-202ENST00000422769 3478 ntTSL 2 BASIC5.72□□□□□ -1.49
USP39Q53GS9 TRPC4-201ENST00000338947 2912 ntTSL 5 BASIC5.72□□□□□ -1.49
USP39Q53GS9 NOL8-214ENST00000535387 3390 ntAPPRIS ALT2 TSL 5 BASIC5.72□□□□□ -1.49
USP39Q53GS9 LMOD3-201ENST00000420581 4086 ntAPPRIS P1 TSL 1 (best) BASIC5.72□□□□□ -1.49
USP39Q53GS9 ZNF33B-208ENST00000613419 5843 ntAPPRIS ALT2 TSL 5 BASIC5.72□□□□□ -1.49
USP39Q53GS9 ESRRG-205ENST00000366937 5365 ntTSL 1 (best) BASIC5.72□□□□□ -1.49
USP39Q53GS9 TTI1-203ENST00000449821 3791 ntAPPRIS P1 TSL 2 BASIC5.72□□□□□ -1.49
USP39Q53GS9 TRAPPC6B-201ENST00000330149 3242 ntAPPRIS P1 TSL 1 (best) BASIC5.72□□□□□ -1.49
USP39Q53GS9 OR5W2-201ENST00000344514 933 ntAPPRIS P1 BASIC5.72□□□□□ -1.49
USP39Q53GS9 Y_RNA.6-201ENST00000362350 114 ntBASIC5.72□□□□□ -1.49
USP39Q53GS9 RNU6-236P-201ENST00000363886 106 ntBASIC5.72□□□□□ -1.49
USP39Q53GS9 SNORD116.1-201ENST00000365628 92 ntBASIC5.72□□□□□ -1.49
USP39Q53GS9 LINC00474-201ENST00000374014 769 ntTSL 1 (best) BASIC5.72□□□□□ -1.49
USP39Q53GS9 PAGE2B-202ENST00000374974 456 ntTSL 5 BASIC5.72□□□□□ -1.49
USP39Q53GS9 AL139095.4-201ENST00000379928 500 ntTSL 2 BASIC5.72□□□□□ -1.49
USP39Q53GS9 AC005042.1-201ENST00000393397 800 ntBASIC5.72□□□□□ -1.49
USP39Q53GS9 RPL7P27-201ENST00000403775 720 ntBASIC5.72□□□□□ -1.49
USP39Q53GS9 RN7SKP213-201ENST00000410746 298 ntBASIC5.72□□□□□ -1.49
USP39Q53GS9 AL663109.1-201ENST00000411498 844 ntBASIC5.72□□□□□ -1.49
USP39Q53GS9 GNG12-AS1-202ENST00000414904 796 ntTSL 3 BASIC5.72□□□□□ -1.49
USP39Q53GS9 AC096644.3-201ENST00000416788 338 ntBASIC5.72□□□□□ -1.49
USP39Q53GS9 AC008173.1-201ENST00000418901 264 ntBASIC5.72□□□□□ -1.49
USP39Q53GS9 AC104170.2-201ENST00000424246 678 ntTSL 3 BASIC5.72□□□□□ -1.49
USP39Q53GS9 AL357832.1-201ENST00000427460 420 ntTSL 3 BASIC5.72□□□□□ -1.49
USP39Q53GS9 Z82246.1-201ENST00000428201 457 ntTSL 2 BASIC5.72□□□□□ -1.49
USP39Q53GS9 AL713851.2-201ENST00000431209 332 ntTSL 2 BASIC5.72□□□□□ -1.49
USP39Q53GS9 AC092598.1-201ENST00000431708 797 ntTSL 3 BASIC5.72□□□□□ -1.49
Retrieved 100 of 98,524 protein–RNA pairs in 100.5 ms