Protein–RNA interactions for Protein: Q3LFD5

USP41, Putative ubiquitin carboxyl-terminal hydrolase 41, humanhuman

Predictions only

Length 358 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP41Q3LFD5 MIR378J-201ENST00000611988 109 ntBASIC5.24□□□□□ -1.57
USP41Q3LFD5 PLSCR2-207ENST00000613069 1208 ntTSL 1 (best) BASIC5.24□□□□□ -1.57
USP41Q3LFD5 AL049777.1-201ENST00000622740 518 ntBASIC5.24□□□□□ -1.57
USP41Q3LFD5 RPL23AP61-201ENST00000623642 466 ntBASIC5.24□□□□□ -1.57
USP41Q3LFD5 RBMS3-AS3-202ENST00000635847 738 ntTSL 5 BASIC5.24□□□□□ -1.57
USP41Q3LFD5 ADGRF2-202ENST00000398742 4895 ntAPPRIS P1 TSL 5 BASIC5.24□□□□□ -1.57
USP41Q3LFD5 AC005005.4-201ENST00000623789 16698 ntBASIC5.24□□□□□ -1.57
USP41Q3LFD5 AC011447.7-201ENST00000624228 1590 ntBASIC5.24□□□□□ -1.57
USP41Q3LFD5 DNAJB4-201ENST00000370763 2988 ntAPPRIS P1 TSL 1 (best) BASIC5.24□□□□□ -1.57
USP41Q3LFD5 AC100778.3-201ENST00000580060 1750 ntBASIC5.24□□□□□ -1.57
USP41Q3LFD5 STX3-208ENST00000641815 3236 ntBASIC5.23□□□□□ -1.57
USP41Q3LFD5 CSPP1-201ENST00000262210 4367 ntAPPRIS P3 TSL 1 (best) BASIC5.23□□□□□ -1.57
USP41Q3LFD5 MYBPC1-208ENST00000547405 3834 ntAPPRIS ALT2 TSL 1 (best) BASIC5.23□□□□□ -1.57
USP41Q3LFD5 RBMS3-202ENST00000383766 2757 ntTSL 1 (best) BASIC5.23□□□□□ -1.57
USP41Q3LFD5 POF1B-201ENST00000262753 3941 ntAPPRIS P3 TSL 1 (best) BASIC5.23□□□□□ -1.57
USP41Q3LFD5 FGF12-204ENST00000445105 5406 ntTSL 1 (best) BASIC5.23□□□□□ -1.57
USP41Q3LFD5 LRRC37A-203ENST00000496930 3860 ntTSL 2 BASIC5.23□□□□□ -1.57
USP41Q3LFD5 DNAJC16-210ENST00000616884 5882 ntTSL 1 (best) BASIC5.23□□□□□ -1.57
USP41Q3LFD5 SCN1A-201ENST00000303395 8533 ntAPPRIS ALT1 TSL 5 BASIC5.23□□□□□ -1.57
USP41Q3LFD5 PRR4-201ENST00000228811 563 ntAPPRIS P3 TSL 1 (best) BASIC5.23□□□□□ -1.57
USP41Q3LFD5 R3HCC1L-204ENST00000370586 941 ntTSL 3 BASIC5.23□□□□□ -1.57
USP41Q3LFD5 LRRC37BP1-201ENST00000398851 714 ntBASIC5.23□□□□□ -1.57
USP41Q3LFD5 RPL21P67-201ENST00000402896 478 ntBASIC5.23□□□□□ -1.57
USP41Q3LFD5 MIR1271-201ENST00000408537 86 ntBASIC5.23□□□□□ -1.57
USP41Q3LFD5 RAB28P1-201ENST00000411517 641 ntBASIC5.23□□□□□ -1.57
USP41Q3LFD5 SETP15-201ENST00000412724 337 ntBASIC5.23□□□□□ -1.57
USP41Q3LFD5 ERMN-209ENST00000420719 1246 ntTSL 2 BASIC5.23□□□□□ -1.57
USP41Q3LFD5 AC068287.1-201ENST00000430283 295 ntBASIC5.23□□□□□ -1.57
USP41Q3LFD5 AC005154.2-201ENST00000438110 379 ntBASIC5.23□□□□□ -1.57
USP41Q3LFD5 AL161618.1-201ENST00000438738 761 ntTSL 5 BASIC5.23□□□□□ -1.57
USP41Q3LFD5 AC010733.1-201ENST00000451515 401 ntBASIC5.23□□□□□ -1.57
USP41Q3LFD5 AC010326.1-201ENST00000462726 602 ntBASIC5.23□□□□□ -1.57
USP41Q3LFD5 RN7SL354P-201ENST00000469282 294 ntBASIC5.23□□□□□ -1.57
USP41Q3LFD5 NAMPTP2-201ENST00000505629 1115 ntBASIC5.23□□□□□ -1.57
USP41Q3LFD5 LINC00616-203ENST00000512536 568 ntTSL 4 BASIC5.23□□□□□ -1.57
USP41Q3LFD5 AC112198.4-201ENST00000515450 351 ntBASIC5.23□□□□□ -1.57
USP41Q3LFD5 AP001978.1-201ENST00000526851 834 ntTSL 2 BASIC5.23□□□□□ -1.57
USP41Q3LFD5 AC084880.2-201ENST00000536009 501 ntTSL 3 BASIC5.23□□□□□ -1.57
USP41Q3LFD5 AC092112.1-201ENST00000538329 640 ntTSL 3 BASIC5.23□□□□□ -1.57
USP41Q3LFD5 PRR4-206ENST00000540107 388 ntAPPRIS ALT2 TSL 3 BASIC5.23□□□□□ -1.57
USP41Q3LFD5 AC078880.1-201ENST00000546696 553 ntTSL 4 BASIC5.23□□□□□ -1.57
USP41Q3LFD5 AC009139.2-201ENST00000569032 566 ntTSL 5 BASIC5.23□□□□□ -1.57
USP41Q3LFD5 FOPNL-207ENST00000575073 530 ntTSL 2 BASIC5.23□□□□□ -1.57
USP41Q3LFD5 AC005695.2-201ENST00000579641 259 ntTSL 3 BASIC5.23□□□□□ -1.57
USP41Q3LFD5 AC114684.1-201ENST00000587659 352 ntTSL 3 BASIC5.23□□□□□ -1.57
USP41Q3LFD5 ZRANB2-AS2-212ENST00000590186 686 ntTSL 5 BASIC5.23□□□□□ -1.57
USP41Q3LFD5 AC068790.7-201ENST00000602347 528 ntBASIC5.23□□□□□ -1.57
USP41Q3LFD5 AC011453.2-201ENST00000603737 729 ntBASIC5.23□□□□□ -1.57
USP41Q3LFD5 AC007497.1-201ENST00000610421 561 ntBASIC5.23□□□□□ -1.57
USP41Q3LFD5 AL138955.1-201ENST00000622881 1040 ntBASIC5.23□□□□□ -1.57
USP41Q3LFD5 AC010872.1-201ENST00000624225 675 ntBASIC5.23□□□□□ -1.57
USP41Q3LFD5 NCLP2-201ENST00000416078 1462 ntBASIC5.23□□□□□ -1.57
USP41Q3LFD5 R3HCC1L-202ENST00000314594 3198 ntAPPRIS P1 TSL 5 BASIC5.23□□□□□ -1.57
USP41Q3LFD5 CFAP47-203ENST00000378653 9943 ntAPPRIS P2 TSL 5 BASIC5.23□□□□□ -1.57
USP41Q3LFD5 RANBP3L-201ENST00000296604 3104 ntAPPRIS P3 TSL 1 (best) BASIC5.23□□□□□ -1.57
USP41Q3LFD5 RGS4-202ENST00000367908 2606 ntTSL 2 BASIC5.23□□□□□ -1.57
USP41Q3LFD5 LMOD2-202ENST00000458573 2346 ntAPPRIS P1 TSL 2 BASIC5.23□□□□□ -1.57
USP41Q3LFD5 AC092329.3-201ENST00000611392 1904 ntAPPRIS P1 TSL 5 BASIC5.23□□□□□ -1.57
USP41Q3LFD5 SASS6-201ENST00000287482 3880 ntAPPRIS P1 TSL 1 (best) BASIC5.23□□□□□ -1.57
USP41Q3LFD5 PLCB1-210ENST00000612075 6576 ntTSL 5 BASIC5.22□□□□□ -1.57
USP41Q3LFD5 ZNF90P1-201ENST00000480493 1951 ntBASIC5.22□□□□□ -1.57
USP41Q3LFD5 VWC2L-202ENST00000427124 4480 ntTSL 1 (best) BASIC5.22□□□□□ -1.57
USP41Q3LFD5 AL450345.1-202ENST00000605741 3881 ntBASIC5.22□□□□□ -1.57
USP41Q3LFD5 AC239809.3-214ENST00000496508 2513 ntTSL 2 BASIC5.22□□□□□ -1.57
USP41Q3LFD5 NBPF10-202ENST00000617010 11630 ntTSL 5 BASIC5.22□□□□□ -1.57
USP41Q3LFD5 SMG1P3-204ENST00000520823 3194 ntTSL 5 BASIC5.22□□□□□ -1.57
USP41Q3LFD5 PPP1R42-201ENST00000324682 1084 ntAPPRIS P2 TSL 1 (best) BASIC5.22□□□□□ -1.57
USP41Q3LFD5 OR6X1-201ENST00000327930 1058 ntAPPRIS P1 BASIC5.22□□□□□ -1.57
USP41Q3LFD5 RNU6-249P-201ENST00000363016 102 ntBASIC5.22□□□□□ -1.57
USP41Q3LFD5 GLULP6-201ENST00000399502 913 ntBASIC5.22□□□□□ -1.57
USP41Q3LFD5 STAT4-203ENST00000409995 709 ntTSL 5 BASIC5.22□□□□□ -1.57
USP41Q3LFD5 RNU4-27P-201ENST00000410889 139 ntBASIC5.22□□□□□ -1.57
USP41Q3LFD5 AC002524.1-201ENST00000411687 547 ntBASIC5.22□□□□□ -1.57
USP41Q3LFD5 AL391863.2-201ENST00000411838 681 ntTSL 2 BASIC5.22□□□□□ -1.57
USP41Q3LFD5 AC068483.1-201ENST00000413403 660 ntTSL 3 BASIC5.22□□□□□ -1.57
USP41Q3LFD5 AL121885.1-201ENST00000417957 451 ntTSL 3 BASIC5.22□□□□□ -1.57
USP41Q3LFD5 SLC9B1P4-201ENST00000421957 1288 ntBASIC5.22□□□□□ -1.57
USP41Q3LFD5 AL603910.1-201ENST00000423099 370 ntTSL 3 BASIC5.22□□□□□ -1.57
USP41Q3LFD5 BACH1-IT3-201ENST00000429843 406 ntTSL 2 BASIC5.22□□□□□ -1.57
USP41Q3LFD5 BX119904.1-201ENST00000432026 348 ntBASIC5.22□□□□□ -1.57
USP41Q3LFD5 AL034380.1-201ENST00000448791 306 ntTSL 3 BASIC5.22□□□□□ -1.57
USP41Q3LFD5 AL691482.1-201ENST00000453255 87 ntBASIC5.22□□□□□ -1.57
USP41Q3LFD5 RPS5P7-201ENST00000456664 608 ntBASIC5.22□□□□□ -1.57
USP41Q3LFD5 CXorf51A-201ENST00000458472 431 ntAPPRIS P1 TSL 2 BASIC5.22□□□□□ -1.57
USP41Q3LFD5 LINC01206-203ENST00000476815 482 ntTSL 3 BASIC5.22□□□□□ -1.57
USP41Q3LFD5 KRTAP5-14P-201ENST00000502328 121 ntBASIC5.22□□□□□ -1.57
USP41Q3LFD5 LINC00504-201ENST00000505089 4672 ntTSL 2 BASIC5.22□□□□□ -1.57
USP41Q3LFD5 AC112518.2-201ENST00000508565 425 ntBASIC5.22□□□□□ -1.57
USP41Q3LFD5 AC106791.1-201ENST00000514616 827 ntTSL 5 BASIC5.22□□□□□ -1.57
USP41Q3LFD5 RNA5SP392-201ENST00000516905 112 ntBASIC5.22□□□□□ -1.57
USP41Q3LFD5 AC048387.1-201ENST00000518428 494 ntTSL 3 BASIC5.22□□□□□ -1.57
USP41Q3LFD5 RBPMS-207ENST00000519647 780 ntTSL 5 BASIC5.22□□□□□ -1.57
USP41Q3LFD5 C1DP5-201ENST00000525775 383 ntBASIC5.22□□□□□ -1.57
USP41Q3LFD5 AC068768.1-204ENST00000544890 796 ntTSL 4 BASIC5.22□□□□□ -1.57
USP41Q3LFD5 AC006116.7-201ENST00000590141 756 ntBASIC5.22□□□□□ -1.57
USP41Q3LFD5 AC068790.4-201ENST00000602474 263 ntBASIC5.22□□□□□ -1.57
USP41Q3LFD5 AC018695.5-201ENST00000605872 315 ntBASIC5.22□□□□□ -1.57
USP41Q3LFD5 AC019193.2-201ENST00000610012 634 ntBASIC5.22□□□□□ -1.57
USP41Q3LFD5 LEUTX-202ENST00000638280 667 ntAPPRIS P1 TSL 3 BASIC5.22□□□□□ -1.57
USP41Q3LFD5 DNAH5-201ENST00000265104 15633 ntAPPRIS P1 TSL 1 (best) BASIC5.22□□□□□ -1.57
Retrieved 100 of 98,524 protein–RNA pairs in 117.6 ms