Protein–RNA interactions for Protein: P53420

COL4A4, Collagen alpha-4(IV) chain, humanhuman

Predicted RBP Predictions only

Length 1,690 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A4P53420 DGKB-202ENST00000402815 5595 ntAPPRIS ALT1 TSL 5 BASIC4.69□□□□□ -1.66
COL4A4P53420 ZNF705D-202ENST00000400085 3377 ntAPPRIS P1 TSL 5 BASIC4.69□□□□□ -1.66
COL4A4P53420 MTRNR2L13-201ENST00000604093 1445 ntAPPRIS P1 BASIC4.69□□□□□ -1.66
COL4A4P53420 LINC01630-206ENST00000635103 4292 ntTSL 5 BASIC4.69□□□□□ -1.66
COL4A4P53420 GRIK2-201ENST00000318991 4317 ntTSL 5 BASIC4.69□□□□□ -1.66
COL4A4P53420 RBM25-201ENST00000261973 6910 ntAPPRIS P1 TSL 1 (best) BASIC4.69□□□□□ -1.66
COL4A4P53420 AC068870.3-201ENST00000625077 2536 ntBASIC4.69□□□□□ -1.66
COL4A4P53420 TAAR1-201ENST00000275216 1020 ntAPPRIS P1 BASIC4.69□□□□□ -1.66
COL4A4P53420 RNA5SP130-201ENST00000364431 114 ntBASIC4.69□□□□□ -1.66
COL4A4P53420 SNORA9-201ENST00000384215 133 ntBASIC4.69□□□□□ -1.66
COL4A4P53420 AL355613.1-201ENST00000451856 480 ntTSL 2 BASIC4.69□□□□□ -1.66
COL4A4P53420 RPS27AP17-201ENST00000463344 455 ntBASIC4.69□□□□□ -1.66
COL4A4P53420 RPL29-203ENST00000475248 551 ntAPPRIS P1 TSL 3 BASIC4.69□□□□□ -1.66
COL4A4P53420 PLAC8-205ENST00000509973 489 ntTSL 1 (best) BASIC4.69□□□□□ -1.66
COL4A4P53420 RNU6-513P-201ENST00000516104 104 ntBASIC4.69□□□□□ -1.66
COL4A4P53420 AC078889.1-201ENST00000536412 523 ntTSL 2 BASIC4.69□□□□□ -1.66
COL4A4P53420 AC087499.8-201ENST00000578406 226 ntBASIC4.69□□□□□ -1.66
COL4A4P53420 AC145207.6-201ENST00000579981 782 ntTSL 5 BASIC4.69□□□□□ -1.66
COL4A4P53420 AF131215.7-201ENST00000602443 707 ntBASIC4.69□□□□□ -1.66
COL4A4P53420 COX6CP4-201ENST00000605798 228 ntBASIC4.69□□□□□ -1.66
COL4A4P53420 AC084757.4-201ENST00000616350 526 ntBASIC4.69□□□□□ -1.66
COL4A4P53420 AC012314.7-201ENST00000619693 93 ntBASIC4.69□□□□□ -1.66
COL4A4P53420 EEF1A1P42-201ENST00000613436 1331 ntBASIC4.69□□□□□ -1.66
COL4A4P53420 FAM111B-202ENST00000411426 3344 ntTSL 4 BASIC4.69□□□□□ -1.66
COL4A4P53420 AP001642.1-201ENST00000624727 2117 ntBASIC4.69□□□□□ -1.66
COL4A4P53420 CLHC1-203ENST00000406076 1777 ntTSL 1 (best) BASIC4.69□□□□□ -1.66
COL4A4P53420 AJ009632.2-204ENST00000635621 1401 ntTSL 5 BASIC4.69□□□□□ -1.66
COL4A4P53420 NHS-205ENST00000617601 8163 ntTSL 1 (best) BASIC4.68□□□□□ -1.66
COL4A4P53420 HELZ-207ENST00000580168 6279 ntAPPRIS P1 TSL 1 (best) BASIC4.68□□□□□ -1.66
COL4A4P53420 ST8SIA4-201ENST00000231461 6303 ntAPPRIS P1 TSL 1 (best) BASIC4.68□□□□□ -1.66
COL4A4P53420 UTS2B-201ENST00000340524 2395 ntAPPRIS P1 TSL 2 BASIC4.68□□□□□ -1.66
COL4A4P53420 CASC17-201ENST00000569074 2059 ntTSL 1 (best) BASIC4.68□□□□□ -1.66
COL4A4P53420 C1orf100-201ENST00000308105 579 ntAPPRIS P1 TSL 2 BASIC4.68□□□□□ -1.66
COL4A4P53420 UQCR10-201ENST00000330029 916 ntAPPRIS P1 TSL 1 (best) BASIC4.68□□□□□ -1.66
COL4A4P53420 SPRR2E-202ENST00000368751 692 ntAPPRIS P1 TSL 1 (best) BASIC4.68□□□□□ -1.66
COL4A4P53420 SNORD96B-201ENST00000386148 79 ntBASIC4.68□□□□□ -1.66
COL4A4P53420 PDC-201ENST00000391997 1242 ntAPPRIS P1 TSL 1 (best) BASIC4.68□□□□□ -1.66
COL4A4P53420 PTMAP2-201ENST00000397627 327 ntBASIC4.68□□□□□ -1.66
COL4A4P53420 AL080315.1-201ENST00000406055 466 ntBASIC4.68□□□□□ -1.66
COL4A4P53420 LINC00161-201ENST00000412526 870 ntTSL 2 BASIC4.68□□□□□ -1.66
COL4A4P53420 AC062016.2-201ENST00000420950 676 ntBASIC4.68□□□□□ -1.66
COL4A4P53420 AC099794.1-201ENST00000450811 447 ntTSL 3 BASIC4.68□□□□□ -1.66
COL4A4P53420 AC091564.1-201ENST00000464563 479 ntBASIC4.68□□□□□ -1.66
COL4A4P53420 AC097534.1-201ENST00000507803 521 ntTSL 4 BASIC4.68□□□□□ -1.66
COL4A4P53420 SNORA74D-201ENST00000516404 141 ntBASIC4.68□□□□□ -1.66
COL4A4P53420 AC025035.1-201ENST00000551571 894 ntTSL 2 BASIC4.68□□□□□ -1.66
COL4A4P53420 AL591770.1-201ENST00000554475 1131 ntTSL 3 BASIC4.68□□□□□ -1.66
COL4A4P53420 AC020661.4-201ENST00000561388 500 ntTSL 3 BASIC4.68□□□□□ -1.66
COL4A4P53420 AC026462.4-201ENST00000565229 951 ntTSL 3 BASIC4.68□□□□□ -1.66
COL4A4P53420 AC011824.2-203ENST00000579975 633 ntTSL 3 BASIC4.68□□□□□ -1.66
COL4A4P53420 ZNF682-204ENST00000593468 581 ntTSL 4 BASIC4.68□□□□□ -1.66
COL4A4P53420 RPS4XP16-203ENST00000596904 698 ntTSL 5 BASIC4.68□□□□□ -1.66
COL4A4P53420 DAOA-AS1_2.2-201ENST00000610818 204 ntBASIC4.68□□□□□ -1.66
COL4A4P53420 AC244196.2-201ENST00000621184 411 ntAPPRIS P1 BASIC4.68□□□□□ -1.66
COL4A4P53420 AC140113.4-201ENST00000622087 222 ntBASIC4.68□□□□□ -1.66
COL4A4P53420 AL359313.1-202ENST00000635073 544 ntTSL 4 BASIC4.68□□□□□ -1.66
COL4A4P53420 LINC01808-202ENST00000641680 1116 ntBASIC4.68□□□□□ -1.66
COL4A4P53420 PRKACB-202ENST00000370682 4288 ntTSL 1 (best) BASIC4.68□□□□□ -1.66
COL4A4P53420 ATXN3-207ENST00000503767 1315 ntTSL 1 (best) BASIC4.68□□□□□ -1.66
COL4A4P53420 RBM28-201ENST00000223073 15507 ntAPPRIS P1 TSL 1 (best) BASIC4.68□□□□□ -1.66
COL4A4P53420 ZNF765-201ENST00000396408 4569 ntAPPRIS P1 TSL 1 (best) BASIC4.68□□□□□ -1.66
COL4A4P53420 ASAH2-204ENST00000447815 2311 ntTSL 1 (best) BASIC4.68□□□□□ -1.66
COL4A4P53420 OR2M3-202ENST00000641626 9913 ntAPPRIS P1 BASIC4.68□□□□□ -1.66
COL4A4P53420 PDE7A-201ENST00000379419 2425 ntAPPRIS P3 TSL 2 BASIC4.68□□□□□ -1.66
COL4A4P53420 CDR1-201ENST00000370532 2467 ntAPPRIS P1 BASIC4.68□□□□□ -1.66
COL4A4P53420 KMT2E-216ENST00000622386 1588 ntTSL 5 BASIC4.68□□□□□ -1.66
COL4A4P53420 ZNF493-203ENST00000392288 5023 ntAPPRIS P1 TSL 1 (best) BASIC4.68□□□□□ -1.66
COL4A4P53420 TFPI-203ENST00000392365 3649 ntAPPRIS P1 TSL 5 BASIC4.67□□□□□ -1.66
COL4A4P53420 KCNIP4-202ENST00000382148 2481 ntAPPRIS ALT1 TSL 1 (best) BASIC4.67□□□□□ -1.66
COL4A4P53420 NABP1-205ENST00000425611 1878 ntAPPRIS P1 TSL 1 (best) BASIC4.67□□□□□ -1.66
COL4A4P53420 OR13G1-201ENST00000359688 1046 ntAPPRIS P1 BASIC4.67□□□□□ -1.66
COL4A4P53420 RNU1-20P-201ENST00000363314 162 ntBASIC4.67□□□□□ -1.66
COL4A4P53420 AC114495.1-201ENST00000441274 436 ntBASIC4.67□□□□□ -1.66
COL4A4P53420 AL353743.2-203ENST00000443630 492 ntTSL 3 BASIC4.67□□□□□ -1.66
COL4A4P53420 Z99127.1-201ENST00000452442 670 ntTSL 5 BASIC4.67□□□□□ -1.66
COL4A4P53420 MEG8-217ENST00000556637 924 ntTSL 5 BASIC4.67□□□□□ -1.66
COL4A4P53420 AL445363.3-201ENST00000623080 671 ntBASIC4.67□□□□□ -1.66
COL4A4P53420 SYTL2-213ENST00000525702 2727 ntTSL 1 (best) BASIC4.67□□□□□ -1.66
COL4A4P53420 LINC00690-201ENST00000429949 1365 ntTSL 1 (best) BASIC4.67□□□□□ -1.66
COL4A4P53420 AC006148.1-201ENST00000484322 4310 ntTSL 1 (best) BASIC4.67□□□□□ -1.66
COL4A4P53420 CACNB4-229ENST00000636617 5757 ntTSL 5 BASIC4.67□□□□□ -1.66
COL4A4P53420 HNF4G-203ENST00000396423 4209 ntAPPRIS P3 TSL 1 (best) BASIC4.67□□□□□ -1.66
COL4A4P53420 OFD1P5Y-201ENST00000447585 2590 ntBASIC4.67□□□□□ -1.66
COL4A4P53420 ARHGAP18-201ENST00000368149 4462 ntAPPRIS P1 TSL 1 (best) BASIC4.67□□□□□ -1.66
COL4A4P53420 AC139769.1-204ENST00000472297 1931 ntBASIC4.67□□□□□ -1.66
COL4A4P53420 RN7SKP235-201ENST00000410662 305 ntBASIC4.67□□□□□ -1.66
COL4A4P53420 AL049812.3-201ENST00000412348 417 ntTSL 3 BASIC4.67□□□□□ -1.66
COL4A4P53420 MRPL50P1-201ENST00000431951 384 ntBASIC4.67□□□□□ -1.66
COL4A4P53420 CYCSP43-201ENST00000438233 310 ntBASIC4.67□□□□□ -1.66
COL4A4P53420 RPL7P33-201ENST00000444159 742 ntBASIC4.67□□□□□ -1.66
COL4A4P53420 RNA5SP519-201ENST00000516480 119 ntBASIC4.67□□□□□ -1.66
COL4A4P53420 AC112484.5-201ENST00000624189 228 ntBASIC4.67□□□□□ -1.66
COL4A4P53420 C12orf50-203ENST00000550553 1525 ntTSL 5 BASIC4.66□□□□□ -1.66
COL4A4P53420 AC015813.1-203ENST00000585065 4722 ntTSL 2 BASIC4.66□□□□□ -1.66
COL4A4P53420 PATJ-202ENST00000316485 3657 ntTSL 5 BASIC4.66□□□□□ -1.66
COL4A4P53420 UPF2-201ENST00000356352 5569 ntAPPRIS P1 TSL 1 (best) BASIC4.66□□□□□ -1.66
COL4A4P53420 DLG2-207ENST00000398309 7890 ntTSL 1 (best) BASIC4.66□□□□□ -1.66
COL4A4P53420 PATJ-213ENST00000613764 4172 ntTSL 5 BASIC4.66□□□□□ -1.66
COL4A4P53420 CYLD-203ENST00000427738 8503 ntTSL 5 BASIC4.66□□□□□ -1.66
COL4A4P53420 PLCXD3-201ENST00000328457 7538 ntAPPRIS P1 TSL 5 BASIC4.66□□□□□ -1.66
Retrieved 100 of 98,524 protein–RNA pairs in 111.5 ms