Protein–RNA interactions for Protein: P49916

LIG3, DNA ligase 3, humanhuman

Predictions only

Length 1,009 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3P49916 TFEC-208ENST00000484212 1245 ntTSL 2 BASIC6.49□□□□□ -1.37
LIG3P49916 OR4G11P-201ENST00000492842 939 ntBASIC6.49□□□□□ -1.37
LIG3P49916 LINC00903-201ENST00000497854 223 ntTSL 3 BASIC6.49□□□□□ -1.37
LIG3P49916 HMGB1P28-201ENST00000507778 552 ntBASIC6.49□□□□□ -1.37
LIG3P49916 GYPB-213ENST00000513128 360 ntTSL 1 (best) BASIC6.49□□□□□ -1.37
LIG3P49916 HMMR-AS1-202ENST00000521666 800 ntTSL 2 BASIC6.49□□□□□ -1.37
LIG3P49916 AF181450.1-201ENST00000522980 410 ntTSL 3 BASIC6.49□□□□□ -1.37
LIG3P49916 AP001893.1-201ENST00000532866 362 ntTSL 5 BASIC6.49□□□□□ -1.37
LIG3P49916 MIR670HG-201ENST00000533531 897 ntTSL 1 (best) BASIC6.49□□□□□ -1.37
LIG3P49916 SNHG1-212ENST00000539975 955 ntTSL 5 BASIC6.49□□□□□ -1.37
LIG3P49916 AP002754.2-201ENST00000542121 462 ntTSL 5 BASIC6.49□□□□□ -1.37
LIG3P49916 AL049836.2-201ENST00000553318 513 ntTSL 5 BASIC6.49□□□□□ -1.37
LIG3P49916 AC023968.1-201ENST00000560719 475 ntBASIC6.49□□□□□ -1.37
LIG3P49916 SNORA59B-202ENST00000578183 701 ntBASIC6.49□□□□□ -1.37
LIG3P49916 AC012417.1-201ENST00000582307 1039 ntBASIC6.49□□□□□ -1.37
LIG3P49916 AC113137.1-201ENST00000591869 558 ntTSL 4 BASIC6.49□□□□□ -1.37
LIG3P49916 CT45A1-202ENST00000594565 1007 ntAPPRIS P1 TSL 1 (best) BASIC6.49□□□□□ -1.37
LIG3P49916 AC025857.2-201ENST00000602711 238 ntBASIC6.49□□□□□ -1.37
LIG3P49916 RNU6-88P-201ENST00000606801 100 ntBASIC6.49□□□□□ -1.37
LIG3P49916 RNA5SP439-201ENST00000617595 124 ntBASIC6.49□□□□□ -1.37
LIG3P49916 AC018816.2-201ENST00000621460 353 ntBASIC6.49□□□□□ -1.37
LIG3P49916 AL122023.1-201ENST00000622847 530 ntBASIC6.49□□□□□ -1.37
LIG3P49916 OR5AK4P-201ENST00000635912 903 ntBASIC6.49□□□□□ -1.37
LIG3P49916 ATE1-AS1-202ENST00000636460 506 ntBASIC6.49□□□□□ -1.37
LIG3P49916 VCAN-201ENST00000265077 12625 ntAPPRIS P3 TSL 1 (best) BASIC6.49□□□□□ -1.37
LIG3P49916 ALG2-202ENST00000319033 1627 ntTSL 1 (best) BASIC6.49□□□□□ -1.37
LIG3P49916 ANKRD31-203ENST00000506364 6207 ntAPPRIS ALT2 TSL 5 BASIC6.49□□□□□ -1.37
LIG3P49916 OR56A4-202ENST00000641156 3768 ntAPPRIS P1 BASIC6.49□□□□□ -1.37
LIG3P49916 LINC01613-201ENST00000561476 2780 ntBASIC6.49□□□□□ -1.37
LIG3P49916 HAUS3-201ENST00000243706 5620 ntAPPRIS P1 TSL 1 (best) BASIC6.49□□□□□ -1.37
LIG3P49916 OR4F17-202ENST00000585993 2669 ntAPPRIS P1 BASIC6.49□□□□□ -1.37
LIG3P49916 CAP1P2-201ENST00000417455 1409 ntBASIC6.49□□□□□ -1.37
LIG3P49916 AC093225.1-201ENST00000506867 1408 ntBASIC6.49□□□□□ -1.37
LIG3P49916 MTND5P26-201ENST00000426018 1752 ntBASIC6.49□□□□□ -1.37
LIG3P49916 ADGRL3-210ENST00000508946 4758 ntAPPRIS ALT2 TSL 5 BASIC6.49□□□□□ -1.37
LIG3P49916 ITGB1-201ENST00000302278 3640 ntAPPRIS P2 TSL 1 (best) BASIC6.49□□□□□ -1.37
LIG3P49916 AC004158.1-201ENST00000564508 4319 ntBASIC6.49□□□□□ -1.37
LIG3P49916 CR848007.1-201ENST00000442354 1699 ntBASIC6.49□□□□□ -1.37
LIG3P49916 AC062022.1-201ENST00000451026 1684 ntBASIC6.49□□□□□ -1.37
LIG3P49916 PEX5L-202ENST00000392649 8540 ntAPPRIS ALT2 TSL 5 BASIC6.48□□□□□ -1.37
LIG3P49916 Z95114.1-201ENST00000624264 14574 ntBASIC6.48□□□□□ -1.37
LIG3P49916 AL121839.2-201ENST00000565058 6943 ntBASIC6.48□□□□□ -1.37
LIG3P49916 LINC01189-201ENST00000428440 3321 ntTSL 2 BASIC6.48□□□□□ -1.37
LIG3P49916 MSL2-202ENST00000434835 2272 ntTSL 2 BASIC6.48□□□□□ -1.37
LIG3P49916 ALB-214ENST00000509063 1911 ntTSL 5 BASIC6.48□□□□□ -1.37
LIG3P49916 CSMD1-215ENST00000537824 13512 ntAPPRIS ALT2 TSL 5 BASIC6.48□□□□□ -1.37
LIG3P49916 LINC02225-201ENST00000510444 4069 ntTSL 1 (best) BASIC6.48□□□□□ -1.37
LIG3P49916 SLAIN1-204ENST00000358679 2075 ntAPPRIS P3 TSL 2 BASIC6.48□□□□□ -1.37
LIG3P49916 AL160286.3-201ENST00000569644 3294 ntTSL 2 BASIC6.48□□□□□ -1.37
LIG3P49916 TRPC4-201ENST00000338947 2912 ntTSL 5 BASIC6.48□□□□□ -1.37
LIG3P49916 CARF-212ENST00000434998 1955 ntTSL 1 (best) BASIC6.48□□□□□ -1.37
LIG3P49916 UGP2-203ENST00000445915 1955 ntTSL 2 BASIC6.48□□□□□ -1.37
LIG3P49916 METTL6-203ENST00000443029 4020 ntAPPRIS P1 TSL 5 BASIC6.48□□□□□ -1.37
LIG3P49916 KCNMB2-210ENST00000617329 2214 ntTSL 2 BASIC6.48□□□□□ -1.37
LIG3P49916 C15orf54-202ENST00000625107 3078 ntTSL 1 (best) BASIC6.48□□□□□ -1.37
LIG3P49916 KCNJ16-205ENST00000586462 1897 ntTSL 5 BASIC6.48□□□□□ -1.37
LIG3P49916 ORC4-214ENST00000535373 6710 ntAPPRIS P1 TSL 5 BASIC6.48□□□□□ -1.37
LIG3P49916 GABRG3-201ENST00000333743 1235 ntTSL 5 BASIC6.48□□□□□ -1.37
LIG3P49916 RN7SKP186-201ENST00000365371 303 ntBASIC6.48□□□□□ -1.37
LIG3P49916 Y_RNA.582-201ENST00000391023 95 ntBASIC6.48□□□□□ -1.37
LIG3P49916 AL589647.1-201ENST00000402485 466 ntBASIC6.48□□□□□ -1.37
LIG3P49916 PPP1R1C-203ENST00000409702 1157 ntAPPRIS P1 TSL 1 (best) BASIC6.48□□□□□ -1.37
LIG3P49916 SULT1C2-204ENST00000409880 1206 ntTSL 3 BASIC6.48□□□□□ -1.37
LIG3P49916 AL024509.3-201ENST00000413898 745 ntTSL 1 (best) BASIC6.48□□□□□ -1.37
LIG3P49916 AL158834.2-201ENST00000415731 696 ntTSL 2 BASIC6.48□□□□□ -1.37
LIG3P49916 AL159174.1-202ENST00000425588 442 ntTSL 3 BASIC6.48□□□□□ -1.37
LIG3P49916 RPL12P16-201ENST00000431098 498 ntBASIC6.48□□□□□ -1.37
LIG3P49916 AC092159.1-201ENST00000433724 493 ntTSL 2 BASIC6.48□□□□□ -1.37
LIG3P49916 AC003989.1-201ENST00000434569 565 ntBASIC6.48□□□□□ -1.37
LIG3P49916 VN1R54P-201ENST00000435210 1049 ntBASIC6.48□□□□□ -1.37
LIG3P49916 AC092155.1-201ENST00000444672 573 ntTSL 4 BASIC6.48□□□□□ -1.37
LIG3P49916 AC002383.1-201ENST00000448260 671 ntTSL 5 BASIC6.48□□□□□ -1.37
LIG3P49916 NPM1P39-201ENST00000449818 867 ntBASIC6.48□□□□□ -1.37
LIG3P49916 AC003071.1-201ENST00000451219 789 ntBASIC6.48□□□□□ -1.37
LIG3P49916 AC131571.1-202ENST00000454509 598 ntTSL 4 BASIC6.48□□□□□ -1.37
LIG3P49916 AC103563.5-201ENST00000455643 364 ntBASIC6.48□□□□□ -1.37
LIG3P49916 AL161747.1-201ENST00000480068 358 ntBASIC6.48□□□□□ -1.37
LIG3P49916 SSBP1-211ENST00000484178 676 ntAPPRIS P1 TSL 3 BASIC6.48□□□□□ -1.37
LIG3P49916 RPS27P20-201ENST00000492051 246 ntBASIC6.48□□□□□ -1.37
LIG3P49916 RPL7P24-201ENST00000493052 752 ntBASIC6.48□□□□□ -1.37
LIG3P49916 AC022206.1-201ENST00000495947 347 ntBASIC6.48□□□□□ -1.37
LIG3P49916 RN7SL649P-201ENST00000496974 275 ntBASIC6.48□□□□□ -1.37
LIG3P49916 AC106822.1-201ENST00000502647 526 ntBASIC6.48□□□□□ -1.37
LIG3P49916 SUMO2P4-201ENST00000504193 276 ntBASIC6.48□□□□□ -1.37
LIG3P49916 HMGN1P16-201ENST00000508308 283 ntBASIC6.48□□□□□ -1.37
LIG3P49916 AC110296.1-201ENST00000515680 341 ntTSL 3 BASIC6.48□□□□□ -1.37
LIG3P49916 RNA5SP418-201ENST00000515951 117 ntBASIC6.48□□□□□ -1.37
LIG3P49916 RNU6-718P-201ENST00000516166 105 ntBASIC6.48□□□□□ -1.37
LIG3P49916 AC136777.2-201ENST00000522979 358 ntBASIC6.48□□□□□ -1.37
LIG3P49916 AP002812.2-201ENST00000525594 585 ntTSL 4 BASIC6.48□□□□□ -1.37
LIG3P49916 RGS5-218ENST00000526176 574 ntTSL 4 BASIC6.48□□□□□ -1.37
LIG3P49916 AC011092.2-201ENST00000533659 586 ntTSL 1 (best) BASIC6.48□□□□□ -1.37
LIG3P49916 AC079907.2-202ENST00000547004 423 ntTSL 2 BASIC6.48□□□□□ -1.37
LIG3P49916 AL049875.1-202ENST00000556620 857 ntTSL 3 BASIC6.48□□□□□ -1.37
LIG3P49916 TRAV15-201ENST00000556680 249 ntBASIC6.48□□□□□ -1.37
LIG3P49916 RORA-AS2-202ENST00000561413 576 ntTSL 4 BASIC6.48□□□□□ -1.37
LIG3P49916 LINC01584-203ENST00000567231 646 ntTSL 5 BASIC6.48□□□□□ -1.37
LIG3P49916 AC022872.1-201ENST00000568391 781 ntTSL 2 BASIC6.48□□□□□ -1.37
LIG3P49916 ALDH3A2-208ENST00000571163 590 ntTSL 5 BASIC6.48□□□□□ -1.37
LIG3P49916 AMZ2-204ENST00000577273 895 ntTSL 5 BASIC6.48□□□□□ -1.37
Retrieved 100 of 98,524 protein–RNA pairs in 90 ms