Protein–RNA interactions for Protein: P39060

COL18A1, Collagen alpha-1(XVIII) chain, humanhuman

Predictions only

Length 1,754 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL18A1P39060 LINC00161-201ENST00000412526 870 ntTSL 2 BASIC5.6□□□□□ -1.51
COL18A1P39060 AL450992.3-201ENST00000413192 568 ntBASIC5.6□□□□□ -1.51
COL18A1P39060 AC092941.1-201ENST00000415940 427 ntTSL 5 BASIC5.6□□□□□ -1.51
COL18A1P39060 AL035246.1-201ENST00000433554 1255 ntBASIC5.6□□□□□ -1.51
COL18A1P39060 PPIAP13-201ENST00000434706 478 ntBASIC5.6□□□□□ -1.51
COL18A1P39060 NUDT7-202ENST00000437314 930 ntTSL 1 (best) BASIC5.6□□□□□ -1.51
COL18A1P39060 RPL23AP46-201ENST00000438548 490 ntBASIC5.6□□□□□ -1.51
COL18A1P39060 CLEC4E-202ENST00000446457 701 ntTSL 3 BASIC5.6□□□□□ -1.51
COL18A1P39060 AC018731.1-201ENST00000447078 576 ntTSL 4 BASIC5.6□□□□□ -1.51
COL18A1P39060 LINC01969-201ENST00000514468 455 ntTSL 3 BASIC5.6□□□□□ -1.51
COL18A1P39060 UTS2-201ENST00000054668 420 ntAPPRIS P4 TSL 1 (best) BASIC5.6□□□□□ -1.51
COL18A1P39060 AC090286.3-201ENST00000573133 187 ntBASIC5.6□□□□□ -1.51
COL18A1P39060 COX6CP4-201ENST00000605798 228 ntBASIC5.6□□□□□ -1.51
COL18A1P39060 AC008833.1-201ENST00000611633 691 ntBASIC5.6□□□□□ -1.51
COL18A1P39060 CR392039.5-201ENST00000623201 510 ntBASIC5.6□□□□□ -1.51
COL18A1P39060 AF067845.5-201ENST00000633906 437 ntTSL 3 BASIC5.6□□□□□ -1.51
COL18A1P39060 ADGRL2-206ENST00000370721 5023 ntTSL 5 BASIC5.6□□□□□ -1.51
COL18A1P39060 CTNND1-214ENST00000526772 4966 ntTSL 1 (best) BASIC5.59□□□□□ -1.51
COL18A1P39060 USP9YP4-201ENST00000424401 1745 ntBASIC5.59□□□□□ -1.51
COL18A1P39060 ZNF891-201ENST00000537226 15455 ntAPPRIS P1 TSL 2 BASIC5.59□□□□□ -1.51
COL18A1P39060 NFIB-203ENST00000380934 2142 ntTSL 2 BASIC5.59□□□□□ -1.51
COL18A1P39060 LINC02227-201ENST00000619068 3748 ntTSL 1 (best) BASIC5.59□□□□□ -1.51
COL18A1P39060 RNU6-213P-201ENST00000384051 104 ntBASIC5.59□□□□□ -1.51
COL18A1P39060 TRAV36DV7-201ENST00000390463 356 ntAPPRIS P1 BASIC5.59□□□□□ -1.51
COL18A1P39060 TAS2R19-201ENST00000390673 1002 ntAPPRIS P1 BASIC5.59□□□□□ -1.51
COL18A1P39060 AL590609.3-201ENST00000411815 210 ntTSL 3 BASIC5.59□□□□□ -1.51
COL18A1P39060 REV3L-IT1-201ENST00000411895 382 ntTSL 5 BASIC5.59□□□□□ -1.51
COL18A1P39060 VN1R32P-201ENST00000452234 905 ntBASIC5.59□□□□□ -1.51
COL18A1P39060 RPL23AP37-201ENST00000479658 549 ntBASIC5.59□□□□□ -1.51
COL18A1P39060 RNA5SP303-201ENST00000516192 130 ntBASIC5.59□□□□□ -1.51
COL18A1P39060 AP000889.1-201ENST00000530968 660 ntBASIC5.59□□□□□ -1.51
COL18A1P39060 MIR5685-201ENST00000579080 79 ntBASIC5.59□□□□□ -1.51
COL18A1P39060 MIR3944-201ENST00000581277 108 ntBASIC5.59□□□□□ -1.51
COL18A1P39060 PTRH2-203ENST00000470557 4114 ntAPPRIS P3 BASIC5.59□□□□□ -1.51
COL18A1P39060 DTNA-231ENST00000598774 2418 ntTSL 1 (best) BASIC5.59□□□□□ -1.52
COL18A1P39060 CA1-225ENST00000626824 2405 ntTSL 5 BASIC5.59□□□□□ -1.52
COL18A1P39060 TET1P1-201ENST00000426627 2301 ntBASIC5.59□□□□□ -1.52
COL18A1P39060 DMD-205ENST00000359836 7339 ntTSL 5 BASIC5.59□□□□□ -1.52
COL18A1P39060 CHMP1B2P-202ENST00000614414 6813 ntTSL 1 (best) BASIC5.58□□□□□ -1.52
COL18A1P39060 CHST9-203ENST00000618847 11388 ntAPPRIS P1 TSL 1 (best) BASIC5.58□□□□□ -1.52
COL18A1P39060 TJP1-209ENST00000545208 5007 ntAPPRIS ALT2 TSL 5 BASIC5.58□□□□□ -1.52
COL18A1P39060 ARHGEF9-229ENST00000637040 5001 ntTSL 5 BASIC5.58□□□□□ -1.52
COL18A1P39060 DUSP19-202ENST00000354221 5176 ntAPPRIS P1 TSL 1 (best) BASIC5.58□□□□□ -1.52
COL18A1P39060 OR51F2-201ENST00000322110 993 ntAPPRIS ALT2 BASIC5.58□□□□□ -1.52
COL18A1P39060 DSCR8-201ENST00000357704 552 ntAPPRIS P5 TSL 2 BASIC5.58□□□□□ -1.52
COL18A1P39060 MIR449B-201ENST00000384995 97 ntBASIC5.58□□□□□ -1.52
COL18A1P39060 ARL4AP4-201ENST00000434170 518 ntBASIC5.58□□□□□ -1.52
COL18A1P39060 INTS6-AS1-201ENST00000434512 466 ntTSL 3 BASIC5.58□□□□□ -1.52
COL18A1P39060 AC099509.1-201ENST00000502437 652 ntTSL 2 BASIC5.58□□□□□ -1.52
COL18A1P39060 LINC01088-208ENST00000511895 795 ntTSL 2 BASIC5.58□□□□□ -1.52
COL18A1P39060 SCARNA13-201ENST00000516672 275 ntBASIC5.58□□□□□ -1.52
COL18A1P39060 AC008641.1-201ENST00000523781 248 ntTSL 3 BASIC5.58□□□□□ -1.52
COL18A1P39060 NELL2-211ENST00000548826 559 ntTSL 2 BASIC5.58□□□□□ -1.52
COL18A1P39060 RN7SL339P-201ENST00000580597 296 ntBASIC5.58□□□□□ -1.52
COL18A1P39060 AC244100.1-202ENST00000621554 382 ntBASIC5.58□□□□□ -1.52
COL18A1P39060 AL158835.3-201ENST00000625908 565 ntTSL 5 BASIC5.58□□□□□ -1.52
COL18A1P39060 OSBPL8-202ENST00000393249 7047 ntAPPRIS ALT1 TSL 1 (best) BASIC5.58□□□□□ -1.52
COL18A1P39060 GABRB2-201ENST00000274547 7409 ntTSL 5 BASIC5.58□□□□□ -1.52
COL18A1P39060 LINC02141-201ENST00000568279 6586 ntTSL 1 (best) BASIC5.58□□□□□ -1.52
COL18A1P39060 FYB1-201ENST00000351578 4750 ntAPPRIS P3 TSL 1 (best) BASIC5.58□□□□□ -1.52
COL18A1P39060 KMT2E-216ENST00000622386 1588 ntTSL 5 BASIC5.58□□□□□ -1.52
COL18A1P39060 AMPD1-203ENST00000520113 2375 ntAPPRIS P3 TSL 1 (best) BASIC5.58□□□□□ -1.52
COL18A1P39060 GLYAT-201ENST00000278400 1150 ntTSL 1 (best) BASIC5.57□□□□□ -1.52
COL18A1P39060 MIR133A2-201ENST00000347538 102 ntBASIC5.57□□□□□ -1.52
COL18A1P39060 OR13G1-201ENST00000359688 1046 ntAPPRIS P1 BASIC5.57□□□□□ -1.52
COL18A1P39060 RNA5SP187-201ENST00000384400 119 ntBASIC5.57□□□□□ -1.52
COL18A1P39060 HSPE1P12-201ENST00000412576 301 ntBASIC5.57□□□□□ -1.52
COL18A1P39060 GCG-202ENST00000418842 1289 ntAPPRIS P1 TSL 1 (best) BASIC5.57□□□□□ -1.52
COL18A1P39060 YME1L1P1-201ENST00000429435 297 ntBASIC5.57□□□□□ -1.52
COL18A1P39060 RPS11P1-201ENST00000451072 473 ntBASIC5.57□□□□□ -1.52
COL18A1P39060 AC022655.2-201ENST00000577280 318 ntBASIC5.57□□□□□ -1.52
COL18A1P39060 AL353726.1-201ENST00000614041 1000 ntBASIC5.57□□□□□ -1.52
COL18A1P39060 AC234782.5-201ENST00000617723 324 ntBASIC5.57□□□□□ -1.52
COL18A1P39060 AC007389.5-201ENST00000629214 744 ntTSL 5 BASIC5.57□□□□□ -1.52
COL18A1P39060 TRMT10A-203ENST00000394877 3516 ntAPPRIS P1 TSL 2 BASIC5.57□□□□□ -1.52
COL18A1P39060 KIAA0586-203ENST00000423743 5339 ntAPPRIS ALT2 TSL 1 (best) BASIC5.57□□□□□ -1.52
COL18A1P39060 ZEB2-241ENST00000637304 9158 ntTSL 5 BASIC5.57□□□□□ -1.52
COL18A1P39060 RNU4-6P-201ENST00000410804 122 ntBASIC5.57□□□□□ -1.52
COL18A1P39060 AC010745.2-201ENST00000420404 839 ntTSL 3 BASIC5.57□□□□□ -1.52
COL18A1P39060 CEACAMP1-201ENST00000434624 1035 ntBASIC5.57□□□□□ -1.52
COL18A1P39060 RPS4XP4-201ENST00000443195 763 ntBASIC5.57□□□□□ -1.52
COL18A1P39060 NADK2-AS1-201ENST00000501794 720 ntTSL 1 (best) BASIC5.57□□□□□ -1.52
COL18A1P39060 LINC01060-205ENST00000512839 716 ntTSL 1 (best) BASIC5.57□□□□□ -1.52
COL18A1P39060 AC012103.1-201ENST00000522281 780 ntTSL 3 BASIC5.57□□□□□ -1.52
COL18A1P39060 AC023442.3-203ENST00000530946 533 ntTSL 4 BASIC5.57□□□□□ -1.52
COL18A1P39060 PUM2-202ENST00000338086 6112 ntAPPRIS P1 TSL 1 (best) BASIC5.57□□□□□ -1.52
COL18A1P39060 OR8J3-203ENST00000641913 3047 ntAPPRIS P1 BASIC5.56□□□□□ -1.52
COL18A1P39060 SYNE2-216ENST00000555002 11532 ntTSL 1 (best) BASIC5.56□□□□□ -1.52
COL18A1P39060 EIF4EBP2-201ENST00000373218 7257 ntAPPRIS P1 TSL 1 (best) BASIC5.56□□□□□ -1.52
COL18A1P39060 ARIH1-201ENST00000379887 21681 ntAPPRIS P1 TSL 1 (best) BASIC5.56□□□□□ -1.52
COL18A1P39060 MYBPC1-208ENST00000547405 3834 ntAPPRIS ALT2 TSL 1 (best) BASIC5.56□□□□□ -1.52
COL18A1P39060 DNM1P47-203ENST00000571780 12667 ntBASIC5.56□□□□□ -1.52
COL18A1P39060 KCNMA1-203ENST00000354353 5732 ntAPPRIS ALT2 TSL 5 BASIC5.56□□□□□ -1.52
COL18A1P39060 DPRX-201ENST00000376650 648 ntAPPRIS P1 TSL 3 BASIC5.56□□□□□ -1.52
COL18A1P39060 AL117381.1-201ENST00000412972 374 ntTSL 3 BASIC5.56□□□□□ -1.52
COL18A1P39060 IFNAR2-206ENST00000413881 710 ntTSL 5 BASIC5.56□□□□□ -1.52
COL18A1P39060 EIF4A1P1-201ENST00000420241 934 ntBASIC5.56□□□□□ -1.52
COL18A1P39060 AL357507.1-201ENST00000435946 669 ntTSL 1 (best) BASIC5.56□□□□□ -1.52
COL18A1P39060 RPL36AP13-201ENST00000457490 317 ntBASIC5.56□□□□□ -1.52
COL18A1P39060 AC006064.5-201ENST00000541782 248 ntBASIC5.56□□□□□ -1.52
Retrieved 100 of 98,524 protein–RNA pairs in 71.2 ms