Protein–RNA interactions for Protein: P38398

BRCA1, Breast cancer type 1 susceptibility protein, humanhuman

Known RBP Predictions only

Length 1,863 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1P38398 RN7SKP182-201ENST00000410772 298 ntBASIC5.29□□□□□ -1.56
BRCA1P38398 NUDT7-202ENST00000437314 930 ntTSL 1 (best) BASIC5.29□□□□□ -1.56
BRCA1P38398 AL365318.1-201ENST00000453128 705 ntTSL 3 BASIC5.29□□□□□ -1.56
BRCA1P38398 AC112206.2-204ENST00000504068 793 ntTSL 3 BASIC5.29□□□□□ -1.56
BRCA1P38398 IGLVVI-25-1-201ENST00000521893 249 ntBASIC5.29□□□□□ -1.56
BRCA1P38398 LINC00520-201ENST00000554186 831 ntTSL 5 BASIC5.29□□□□□ -1.56
BRCA1P38398 AC126323.3-201ENST00000565136 564 ntTSL 4 BASIC5.29□□□□□ -1.56
BRCA1P38398 MIR3200-201ENST00000580767 85 ntBASIC5.29□□□□□ -1.56
BRCA1P38398 ADAD1P2-201ENST00000588476 646 ntBASIC5.29□□□□□ -1.56
BRCA1P38398 AC010487.1-201ENST00000594408 1172 ntBASIC5.29□□□□□ -1.56
BRCA1P38398 AC005034.4-201ENST00000603612 899 ntBASIC5.29□□□□□ -1.56
BRCA1P38398 AC015804.1-201ENST00000622935 435 ntBASIC5.29□□□□□ -1.56
BRCA1P38398 AC010608.2-201ENST00000624830 470 ntBASIC5.29□□□□□ -1.56
BRCA1P38398 PTPN13-209ENST00000511467 8076 ntAPPRIS P4 TSL 2 BASIC5.29□□□□□ -1.56
BRCA1P38398 CLSPN-203ENST00000373220 3977 ntAPPRIS ALT2 TSL 1 (best) BASIC5.29□□□□□ -1.56
BRCA1P38398 DDX18P5-201ENST00000534547 1306 ntBASIC5.29□□□□□ -1.56
BRCA1P38398 NR2C2-213ENST00000617312 8113 ntTSL 1 (best) BASIC5.29□□□□□ -1.56
BRCA1P38398 TNNI3K-201ENST00000326637 3001 ntAPPRIS P1 TSL 1 (best) BASIC5.29□□□□□ -1.56
BRCA1P38398 RYR3-212ENST00000634891 15591 ntAPPRIS P3 TSL 1 (best) BASIC5.28□□□□□ -1.56
BRCA1P38398 FMN1-212ENST00000616417 13529 ntAPPRIS ALT2 TSL 5 BASIC5.28□□□□□ -1.56
BRCA1P38398 RAB9AP3-201ENST00000412737 573 ntBASIC5.28□□□□□ -1.56
BRCA1P38398 RAB9AP1-201ENST00000449393 573 ntBASIC5.28□□□□□ -1.56
BRCA1P38398 AC107016.1-201ENST00000550463 337 ntBASIC5.28□□□□□ -1.56
BRCA1P38398 AC025175.1-201ENST00000606482 759 ntBASIC5.28□□□□□ -1.56
BRCA1P38398 ANKRD34C-201ENST00000421388 4951 ntAPPRIS P1 BASIC5.28□□□□□ -1.56
BRCA1P38398 FSBP-203ENST00000611249 2181 ntAPPRIS P1 TSL 5 BASIC5.28□□□□□ -1.56
BRCA1P38398 MAGI2-222ENST00000636039 5671 ntTSL 5 BASIC5.28□□□□□ -1.56
BRCA1P38398 TPTE2-205ENST00000400230 1793 ntAPPRIS P1 TSL 5 BASIC5.28□□□□□ -1.56
BRCA1P38398 GPR18-201ENST00000340807 1698 ntAPPRIS P1 TSL 1 (best) BASIC5.28□□□□□ -1.56
BRCA1P38398 OR6Y1-202ENST00000641282 3702 ntAPPRIS P1 BASIC5.28□□□□□ -1.56
BRCA1P38398 CDC23-202ENST00000394886 3155 ntAPPRIS P1 TSL 1 (best) BASIC5.28□□□□□ -1.56
BRCA1P38398 SAMD9L-202ENST00000411955 5831 ntAPPRIS P1 TSL 5 BASIC5.28□□□□□ -1.56
BRCA1P38398 OR4A15-201ENST00000314706 1035 ntBASIC5.28□□□□□ -1.56
BRCA1P38398 MOBP-206ENST00000428261 561 ntAPPRIS ALT2 TSL 4 BASIC5.28□□□□□ -1.56
BRCA1P38398 AP000907.1-201ENST00000428428 510 ntBASIC5.28□□□□□ -1.56
BRCA1P38398 AC007422.1-201ENST00000433065 1008 ntTSL 5 BASIC5.28□□□□□ -1.56
BRCA1P38398 AL672167.1-201ENST00000441381 464 ntTSL 3 BASIC5.28□□□□□ -1.56
BRCA1P38398 AF213884.1-201ENST00000488102 463 ntBASIC5.28□□□□□ -1.56
BRCA1P38398 NPM1P21-201ENST00000513394 762 ntBASIC5.28□□□□□ -1.56
BRCA1P38398 RNU6-352P-201ENST00000516908 107 ntBASIC5.28□□□□□ -1.56
BRCA1P38398 AC093014.1-201ENST00000548926 724 ntBASIC5.28□□□□□ -1.56
BRCA1P38398 AC026401.1-201ENST00000549756 530 ntTSL 3 BASIC5.28□□□□□ -1.56
BRCA1P38398 MED6-207ENST00000554963 975 ntAPPRIS ALT1 TSL 5 BASIC5.28□□□□□ -1.56
BRCA1P38398 MMP2-AS1-202ENST00000569037 553 ntTSL 5 BASIC5.28□□□□□ -1.56
BRCA1P38398 AC130352.1-201ENST00000602979 661 ntBASIC5.28□□□□□ -1.56
BRCA1P38398 LINC02112-204ENST00000606222 429 ntTSL 5 BASIC5.28□□□□□ -1.56
BRCA1P38398 AL662844.3-201ENST00000606909 517 ntTSL 5 BASIC5.28□□□□□ -1.56
BRCA1P38398 DARS-AS1-225ENST00000615163 824 ntTSL 5 BASIC5.28□□□□□ -1.56
BRCA1P38398 AP000648.2-201ENST00000624182 404 ntBASIC5.28□□□□□ -1.56
BRCA1P38398 BX088723.1-201ENST00000637785 708 ntTSL 5 BASIC5.28□□□□□ -1.56
BRCA1P38398 OR8J3-204ENST00000642058 3806 ntAPPRIS P1 BASIC5.28□□□□□ -1.56
BRCA1P38398 AC139769.1-204ENST00000472297 1931 ntBASIC5.27□□□□□ -1.57
BRCA1P38398 BBOX1-202ENST00000525090 1596 ntAPPRIS P1 TSL 1 (best) BASIC5.27□□□□□ -1.57
BRCA1P38398 AC073136.1-201ENST00000449426 2884 ntBASIC5.27□□□□□ -1.57
BRCA1P38398 AL606516.1-201ENST00000455438 1861 ntTSL 2 BASIC5.27□□□□□ -1.57
BRCA1P38398 MYO3B-202ENST00000408978 5529 ntAPPRIS P3 TSL 1 (best) BASIC5.27□□□□□ -1.57
BRCA1P38398 ZNF780A-205ENST00000594395 2044 ntAPPRIS ALT2 TSL 2 BASIC5.27□□□□□ -1.57
BRCA1P38398 PCNPP4-201ENST00000414817 517 ntBASIC5.27□□□□□ -1.57
BRCA1P38398 ARAFP1-201ENST00000422172 605 ntBASIC5.27□□□□□ -1.57
BRCA1P38398 AL449983.1-201ENST00000430640 414 ntTSL 2 BASIC5.27□□□□□ -1.57
BRCA1P38398 AL138759.1-201ENST00000432120 645 ntTSL 2 BASIC5.27□□□□□ -1.57
BRCA1P38398 AC016912.1-201ENST00000432241 545 ntTSL 3 BASIC5.27□□□□□ -1.57
BRCA1P38398 AC084149.2-201ENST00000438443 797 ntTSL 5 BASIC5.27□□□□□ -1.57
BRCA1P38398 UBE2V1P3-201ENST00000439651 417 ntBASIC5.27□□□□□ -1.57
BRCA1P38398 AL355601.1-201ENST00000444701 427 ntTSL 3 BASIC5.27□□□□□ -1.57
BRCA1P38398 AC021660.1-201ENST00000465006 554 ntBASIC5.27□□□□□ -1.57
BRCA1P38398 NPM1P28-201ENST00000492269 840 ntBASIC5.27□□□□□ -1.57
BRCA1P38398 AC113404.3-201ENST00000506621 555 ntTSL 5 BASIC5.27□□□□□ -1.57
BRCA1P38398 PAICSP4-201ENST00000517543 1253 ntBASIC5.27□□□□□ -1.57
BRCA1P38398 AP001458.1-201ENST00000532626 92 ntTSL 3 BASIC5.27□□□□□ -1.57
BRCA1P38398 ANP32E-205ENST00000533654 908 ntTSL 2 BASIC5.27□□□□□ -1.57
BRCA1P38398 PIWIL4-203ENST00000537419 831 ntTSL 2 BASIC5.27□□□□□ -1.57
BRCA1P38398 AC079907.2-202ENST00000547004 423 ntTSL 2 BASIC5.27□□□□□ -1.57
BRCA1P38398 AC100844.1-201ENST00000580622 440 ntTSL 5 BASIC5.27□□□□□ -1.57
BRCA1P38398 MIR4660-201ENST00000583549 74 ntBASIC5.27□□□□□ -1.57
BRCA1P38398 AL355512.1-201ENST00000609514 488 ntTSL 5 BASIC5.27□□□□□ -1.57
BRCA1P38398 DAOA-AS1_2.2-201ENST00000610818 204 ntBASIC5.27□□□□□ -1.57
BRCA1P38398 GJA9-202ENST00000360786 1901 ntAPPRIS P1 BASIC5.27□□□□□ -1.57
BRCA1P38398 EED-206ENST00000527888 1422 ntTSL 2 BASIC5.27□□□□□ -1.57
BRCA1P38398 ZNF518B-201ENST00000326756 6894 ntAPPRIS P1 TSL 3 BASIC5.27□□□□□ -1.57
BRCA1P38398 ECT2L-205ENST00000541398 4483 ntAPPRIS P1 TSL 5 BASIC5.27□□□□□ -1.57
BRCA1P38398 SPAG6-209ENST00000538630 2376 ntTSL 5 BASIC5.27□□□□□ -1.57
BRCA1P38398 PCNX4-201ENST00000317623 17339 ntAPPRIS P3 TSL 5 BASIC5.27□□□□□ -1.57
BRCA1P38398 ZNF285B-201ENST00000561698 1767 ntBASIC5.27□□□□□ -1.57
BRCA1P38398 DSC2-202ENST00000280904 12325 ntAPPRIS P1 TSL 1 (best) BASIC5.26□□□□□ -1.57
BRCA1P38398 PROS1-203ENST00000407433 3335 ntTSL 1 (best) BASIC5.26□□□□□ -1.57
BRCA1P38398 UACA-211ENST00000560441 4723 ntAPPRIS ALT2 TSL 5 BASIC5.26□□□□□ -1.57
BRCA1P38398 PLCB4-201ENST00000278655 5430 ntAPPRIS ALT1 TSL 1 (best) BASIC5.26□□□□□ -1.57
BRCA1P38398 GVINP1-201ENST00000526769 8438 ntTSL 1 (best) BASIC5.26□□□□□ -1.57
BRCA1P38398 RNA5SP307-201ENST00000362863 116 ntBASIC5.26□□□□□ -1.57
BRCA1P38398 RNA5SP187-201ENST00000384400 119 ntBASIC5.26□□□□□ -1.57
BRCA1P38398 AC233289.1-201ENST00000403700 508 ntBASIC5.26□□□□□ -1.57
BRCA1P38398 AL450992.3-201ENST00000413192 568 ntBASIC5.26□□□□□ -1.57
BRCA1P38398 TTTY21B-201ENST00000421353 307 ntTSL 1 (best) BASIC5.26□□□□□ -1.57
BRCA1P38398 TTTY21-201ENST00000430228 307 ntTSL 1 (best) BASIC5.26□□□□□ -1.57
BRCA1P38398 AC018742.1-201ENST00000435237 488 ntTSL 3 BASIC5.26□□□□□ -1.57
BRCA1P38398 AC007967.1-201ENST00000455422 1159 ntBASIC5.26□□□□□ -1.57
BRCA1P38398 LMOD2-201ENST00000456238 918 ntTSL 1 (best) BASIC5.26□□□□□ -1.57
BRCA1P38398 LINC00377-201ENST00000456588 657 ntTSL 5 BASIC5.26□□□□□ -1.57
BRCA1P38398 MYL12BP2-201ENST00000503948 512 ntBASIC5.26□□□□□ -1.57
Retrieved 100 of 98,524 protein–RNA pairs in 74 ms