Protein–RNA interactions for Protein: P18827

SDC1, Syndecan-1, humanhuman

Predictions only

Length 310 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1P18827 AC090013.1-201ENST00000485147 480 ntBASIC4.35□□□□□ -1.71
SDC1P18827 AC004453.1-201ENST00000487895 408 ntBASIC4.35□□□□□ -1.71
SDC1P18827 AC090543.1-201ENST00000492168 485 ntBASIC4.35□□□□□ -1.71
SDC1P18827 AC055758.1-201ENST00000494509 569 ntTSL 3 BASIC4.35□□□□□ -1.71
SDC1P18827 HMGB1P47-201ENST00000511281 589 ntBASIC4.35□□□□□ -1.71
SDC1P18827 AC007016.1-201ENST00000512110 244 ntBASIC4.35□□□□□ -1.71
SDC1P18827 AC034244.2-201ENST00000514668 858 ntBASIC4.35□□□□□ -1.71
SDC1P18827 LINC02505-203ENST00000515128 756 ntTSL 5 BASIC4.35□□□□□ -1.71
SDC1P18827 RPS27AP18-201ENST00000515536 459 ntBASIC4.35□□□□□ -1.71
SDC1P18827 AC090151.1-201ENST00000520784 730 ntBASIC4.35□□□□□ -1.71
SDC1P18827 MAL2-201ENST00000522112 573 ntTSL 4 BASIC4.35□□□□□ -1.71
SDC1P18827 LINC01486-201ENST00000538041 716 ntTSL 2 BASIC4.35□□□□□ -1.71
SDC1P18827 AC084291.1-201ENST00000544667 548 ntTSL 2 BASIC4.35□□□□□ -1.71
SDC1P18827 AC069437.1-201ENST00000551372 512 ntTSL 4 BASIC4.35□□□□□ -1.71
SDC1P18827 AL136501.1-201ENST00000555913 790 ntTSL 2 BASIC4.35□□□□□ -1.71
SDC1P18827 AL359237.1-202ENST00000556168 487 ntTSL 5 BASIC4.35□□□□□ -1.71
SDC1P18827 MTRNR2L12-201ENST00000600213 1049 ntAPPRIS P1 BASIC4.35□□□□□ -1.71
SDC1P18827 AP2S1-210ENST00000601649 315 ntTSL 3 BASIC4.35□□□□□ -1.71
SDC1P18827 AC098935.2-201ENST00000604222 466 ntBASIC4.35□□□□□ -1.71
SDC1P18827 AC133644.2-201ENST00000608142 540 ntBASIC4.35□□□□□ -1.71
SDC1P18827 SDR42E1P1-201ENST00000611327 477 ntBASIC4.35□□□□□ -1.71
SDC1P18827 5S_rRNA.16-201ENST00000612928 119 ntBASIC4.35□□□□□ -1.71
SDC1P18827 AC023490.1-202ENST00000620909 820 ntTSL 5 BASIC4.35□□□□□ -1.71
SDC1P18827 LGALS13-204ENST00000621475 494 ntAPPRIS ALT2 TSL 5 BASIC4.35□□□□□ -1.71
SDC1P18827 AC091905.2-201ENST00000623143 306 ntBASIC4.35□□□□□ -1.71
SDC1P18827 AC132825.1-201ENST00000463573 2247 ntBASIC4.35□□□□□ -1.71
SDC1P18827 CYP3A43-203ENST00000342499 1396 ntTSL 1 (best) BASIC4.35□□□□□ -1.71
SDC1P18827 KARSP3-201ENST00000571212 1504 ntBASIC4.35□□□□□ -1.71
SDC1P18827 OR2AP1-202ENST00000641114 1548 ntAPPRIS P1 BASIC4.35□□□□□ -1.71
SDC1P18827 PRUNE2-208ENST00000443509 12356 ntAPPRIS ALT2 TSL 5 BASIC4.34□□□□□ -1.71
SDC1P18827 ZNF630-207ENST00000616492 2220 ntAPPRIS ALT2 TSL 5 BASIC4.34□□□□□ -1.71
SDC1P18827 FAM133A-202ENST00000332647 3159 ntAPPRIS P1 TSL 2 BASIC4.34□□□□□ -1.71
SDC1P18827 LINC02389-201ENST00000535058 3546 ntTSL 2 BASIC4.34□□□□□ -1.71
SDC1P18827 HACD4-202ENST00000495827 8267 ntAPPRIS P1 TSL 2 BASIC4.34□□□□□ -1.71
SDC1P18827 SLC17A4-201ENST00000377905 3616 ntAPPRIS P1 TSL 1 (best) BASIC4.34□□□□□ -1.71
SDC1P18827 AL590240.1-201ENST00000334118 313 ntBASIC4.34□□□□□ -1.71
SDC1P18827 TRPM3-206ENST00000377097 554 ntTSL 2 BASIC4.34□□□□□ -1.71
SDC1P18827 OR51A2-201ENST00000380371 942 ntAPPRIS P1 BASIC4.34□□□□□ -1.71
SDC1P18827 RNU1-63P-201ENST00000383902 164 ntBASIC4.34□□□□□ -1.71
SDC1P18827 AL645927.1-201ENST00000396783 406 ntBASIC4.34□□□□□ -1.71
SDC1P18827 OR1F12-201ENST00000402365 945 ntBASIC4.34□□□□□ -1.71
SDC1P18827 GSTA12P-201ENST00000402398 508 ntBASIC4.34□□□□□ -1.71
SDC1P18827 LIPN-201ENST00000404459 1197 ntAPPRIS P1 TSL 1 (best) BASIC4.34□□□□□ -1.71
SDC1P18827 LINC01945-201ENST00000419784 840 ntTSL 2 BASIC4.34□□□□□ -1.71
SDC1P18827 SLC9B1P4-201ENST00000421957 1288 ntBASIC4.34□□□□□ -1.71
SDC1P18827 AL357315.1-201ENST00000422930 254 ntTSL 5 BASIC4.34□□□□□ -1.71
SDC1P18827 MTCYBP29-201ENST00000436327 1006 ntBASIC4.34□□□□□ -1.71
SDC1P18827 DARS-AS1-206ENST00000446492 488 ntTSL 3 BASIC4.34□□□□□ -1.71
SDC1P18827 RPL31P44-201ENST00000447680 377 ntBASIC4.34□□□□□ -1.71
SDC1P18827 LINC00448-202ENST00000448411 433 ntTSL 2 BASIC4.34□□□□□ -1.71
SDC1P18827 CALM1P2-201ENST00000452941 448 ntBASIC4.34□□□□□ -1.71
SDC1P18827 RPS6P2-201ENST00000454208 705 ntBASIC4.34□□□□□ -1.71
SDC1P18827 AL353152.1-201ENST00000455973 470 ntTSL 5 BASIC4.34□□□□□ -1.71
SDC1P18827 AC004692.2-202ENST00000458680 478 ntTSL 3 BASIC4.34□□□□□ -1.71
SDC1P18827 STK26-205ENST00000496850 1186 ntTSL 1 (best) BASIC4.34□□□□□ -1.71
SDC1P18827 MTND4LP2-201ENST00000502312 285 ntBASIC4.34□□□□□ -1.71
SDC1P18827 OR5M14P-201ENST00000506803 618 ntBASIC4.34□□□□□ -1.71
SDC1P18827 AC011389.1-201ENST00000509170 594 ntTSL 4 BASIC4.34□□□□□ -1.71
SDC1P18827 AC108157.1-201ENST00000510511 539 ntBASIC4.34□□□□□ -1.71
SDC1P18827 AC021733.1-201ENST00000519786 325 ntTSL 3 BASIC4.34□□□□□ -1.71
SDC1P18827 AC114550.3-201ENST00000524073 579 ntTSL 4 BASIC4.34□□□□□ -1.71
SDC1P18827 AC087783.1-201ENST00000527135 564 ntTSL 4 BASIC4.34□□□□□ -1.71
SDC1P18827 AC007298.1-201ENST00000547346 656 ntTSL 3 BASIC4.34□□□□□ -1.71
SDC1P18827 AC087888.1-201ENST00000550884 1254 ntBASIC4.34□□□□□ -1.71
SDC1P18827 AC025035.1-201ENST00000551571 894 ntTSL 2 BASIC4.34□□□□□ -1.71
SDC1P18827 IGHV4OR15-8-201ENST00000557788 353 ntAPPRIS P1 BASIC4.34□□□□□ -1.71
SDC1P18827 AC084759.1-201ENST00000561168 290 ntBASIC4.34□□□□□ -1.71
SDC1P18827 AL731537.2-201ENST00000561565 951 ntBASIC4.34□□□□□ -1.71
SDC1P18827 AC020659.1-204ENST00000562920 400 ntTSL 3 BASIC4.34□□□□□ -1.71
SDC1P18827 AC026462.4-201ENST00000565229 951 ntTSL 3 BASIC4.34□□□□□ -1.71
SDC1P18827 ALOX12P2-208ENST00000574183 519 ntTSL 3 BASIC4.34□□□□□ -1.71
SDC1P18827 RPL27-207ENST00000590864 569 ntTSL 2 BASIC4.34□□□□□ -1.71
SDC1P18827 SLC14A2-AS1-204ENST00000592899 359 ntTSL 3 BASIC4.34□□□□□ -1.71
SDC1P18827 AL133247.2-201ENST00000603236 482 ntBASIC4.34□□□□□ -1.71
SDC1P18827 AC103792.1-201ENST00000603591 919 ntBASIC4.34□□□□□ -1.71
SDC1P18827 AC006237.1-201ENST00000603816 480 ntTSL 3 BASIC4.34□□□□□ -1.71
SDC1P18827 AC233280.2-201ENST00000603917 1070 ntBASIC4.34□□□□□ -1.71
SDC1P18827 AC010201.1-201ENST00000605051 540 ntBASIC4.34□□□□□ -1.71
SDC1P18827 AL021368.1-201ENST00000607490 540 ntBASIC4.34□□□□□ -1.71
SDC1P18827 AC135068.2-201ENST00000622410 353 ntAPPRIS P1 BASIC4.34□□□□□ -1.71
SDC1P18827 OR5R1-201ENST00000623286 975 ntAPPRIS P1 BASIC4.34□□□□□ -1.71
SDC1P18827 AC079298.2-201ENST00000623885 459 ntBASIC4.34□□□□□ -1.71
SDC1P18827 AP003499.2-201ENST00000624100 483 ntBASIC4.34□□□□□ -1.71
SDC1P18827 ATL2-217ENST00000629272 1242 ntTSL 5 BASIC4.34□□□□□ -1.71
SDC1P18827 PRG4-203ENST00000367485 4765 ntAPPRIS ALT2 TSL 5 BASIC4.34□□□□□ -1.71
SDC1P18827 UGT2B26P-201ENST00000508672 1613 ntBASIC4.34□□□□□ -1.71
SDC1P18827 DEPDC1-202ENST00000456315 5331 ntTSL 1 (best) BASIC4.34□□□□□ -1.71
SDC1P18827 C8orf4-201ENST00000315792 1854 ntAPPRIS P1 BASIC4.34□□□□□ -1.71
SDC1P18827 ZNF137P-201ENST00000456718 1920 ntBASIC4.34□□□□□ -1.71
SDC1P18827 ADAM18-201ENST00000265707 2388 ntAPPRIS P3 TSL 1 (best) BASIC4.34□□□□□ -1.72
SDC1P18827 AL157756.1-201ENST00000532515 2859 ntTSL 1 (best) BASIC4.34□□□□□ -1.72
SDC1P18827 CTNNA3-203ENST00000433211 10675 ntAPPRIS P1 TSL 1 (best) BASIC4.34□□□□□ -1.72
SDC1P18827 GRIK2-201ENST00000318991 4317 ntTSL 5 BASIC4.34□□□□□ -1.72
SDC1P18827 NFIB-210ENST00000543693 7622 ntTSL 1 (best) BASIC4.33□□□□□ -1.72
SDC1P18827 PDCD1LG2-201ENST00000397747 2365 ntAPPRIS P1 TSL 1 (best) BASIC4.33□□□□□ -1.72
SDC1P18827 AC110792.3-201ENST00000595906 1614 ntBASIC4.33□□□□□ -1.72
SDC1P18827 RLIMP2-201ENST00000427891 1563 ntBASIC4.33□□□□□ -1.72
SDC1P18827 CD96-203ENST00000438817 1565 ntTSL 1 (best) BASIC4.33□□□□□ -1.72
SDC1P18827 AC010928.1-201ENST00000592477 1447 ntBASIC4.33□□□□□ -1.72
SDC1P18827 AC021146.4-201ENST00000309229 279 ntBASIC4.33□□□□□ -1.72
Retrieved 100 of 98,524 protein–RNA pairs in 75.6 ms