Protein–RNA interactions for Protein: P12111

COL6A3, Collagen alpha-3(VI) chain, humanhuman

Predictions only

Length 3,177 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3P12111 KIAA0825-203ENST00000513200 4942 ntTSL 5 BASIC4.35□□□□□ -1.71
COL6A3P12111 TTC21B-AS1-201ENST00000440322 2260 ntTSL 4 BASIC4.35□□□□□ -1.71
COL6A3P12111 POGZ-204ENST00000392723 6152 ntTSL 1 (best) BASIC4.35□□□□□ -1.71
COL6A3P12111 SEMA3A-201ENST00000265362 8225 ntAPPRIS P1 TSL 1 (best) BASIC4.35□□□□□ -1.71
COL6A3P12111 GDNF-AS1-202ENST00000510986 1941 ntTSL 1 (best) BASIC4.35□□□□□ -1.71
COL6A3P12111 CD109-203ENST00000437994 9401 ntAPPRIS ALT1 TSL 1 (best) BASIC4.35□□□□□ -1.71
COL6A3P12111 ZNF532-223ENST00000591230 4450 ntAPPRIS P1 TSL 1 (best) BASIC4.35□□□□□ -1.71
COL6A3P12111 BICRAL-202ENST00000394168 6515 ntAPPRIS P1 TSL 1 (best) BASIC4.35□□□□□ -1.71
COL6A3P12111 CCRL1P1-201ENST00000449542 1053 ntBASIC4.35□□□□□ -1.71
COL6A3P12111 RPS27AP17-201ENST00000463344 455 ntBASIC4.35□□□□□ -1.71
COL6A3P12111 AC021491.3-201ENST00000513378 156 ntTSL 3 BASIC4.35□□□□□ -1.71
COL6A3P12111 AC079209.1-201ENST00000519412 820 ntTSL 3 BASIC4.35□□□□□ -1.71
COL6A3P12111 MS4A13-204ENST00000527948 790 ntTSL 1 (best) BASIC4.35□□□□□ -1.71
COL6A3P12111 AC007458.1-201ENST00000542812 373 ntBASIC4.35□□□□□ -1.71
COL6A3P12111 AC025175.1-201ENST00000606482 759 ntBASIC4.35□□□□□ -1.71
COL6A3P12111 MALAT1-210ENST00000617489 318 ntTSL 2 BASIC4.35□□□□□ -1.71
COL6A3P12111 LINC01478-201ENST00000587877 2068 ntTSL 1 (best) BASIC4.35□□□□□ -1.71
COL6A3P12111 TSC1-208ENST00000545250 8310 ntTSL 5 BASIC4.35□□□□□ -1.71
COL6A3P12111 XIAP-202ENST00000371199 8591 ntAPPRIS P1 TSL 1 (best) BASIC4.35□□□□□ -1.71
COL6A3P12111 ZNF93-201ENST00000343769 2648 ntAPPRIS P1 TSL 1 (best) BASIC4.35□□□□□ -1.71
COL6A3P12111 ZNF573-202ENST00000357309 2124 ntTSL 5 BASIC4.35□□□□□ -1.71
COL6A3P12111 MYBPC1-201ENST00000361466 3899 ntAPPRIS P4 TSL 1 (best) BASIC4.35□□□□□ -1.71
COL6A3P12111 PCNX1-201ENST00000304743 12919 ntAPPRIS P1 TSL 1 (best) BASIC4.35□□□□□ -1.71
COL6A3P12111 SEMA6D-210ENST00000558816 4419 ntTSL 5 BASIC4.35□□□□□ -1.71
COL6A3P12111 ARF4P3-201ENST00000397387 509 ntBASIC4.35□□□□□ -1.71
COL6A3P12111 DNAJC19P8-201ENST00000452887 259 ntBASIC4.35□□□□□ -1.71
COL6A3P12111 AC110743.1-201ENST00000584870 478 ntBASIC4.35□□□□□ -1.71
COL6A3P12111 AC244505.7-201ENST00000599675 272 ntBASIC4.35□□□□□ -1.71
COL6A3P12111 MUC3A-203ENST00000483366 9944 ntAPPRIS ALT2 TSL 5 BASIC4.35□□□□□ -1.71
COL6A3P12111 CLEC2D-203ENST00000290855 5279 ntAPPRIS P3 TSL 1 (best) BASIC4.35□□□□□ -1.71
COL6A3P12111 TEX41-207ENST00000445791 4635 ntTSL 1 (best) BASIC4.35□□□□□ -1.71
COL6A3P12111 RPS20P14-201ENST00000412545 360 ntBASIC4.35□□□□□ -1.71
COL6A3P12111 KIAA0895-209ENST00000453212 956 ntTSL 3 BASIC4.35□□□□□ -1.71
COL6A3P12111 OR8I1P-201ENST00000529291 931 ntBASIC4.35□□□□□ -1.71
COL6A3P12111 LRRC37A5P-202ENST00000536054 1095 ntTSL 1 (best) BASIC4.35□□□□□ -1.71
COL6A3P12111 SNHG1-211ENST00000539921 1071 ntTSL 2 BASIC4.35□□□□□ -1.71
COL6A3P12111 AL355112.1-201ENST00000550309 1236 ntTSL 1 (best) BASIC4.35□□□□□ -1.71
COL6A3P12111 AC023762.1-201ENST00000603280 584 ntBASIC4.35□□□□□ -1.71
COL6A3P12111 SRP72P2-201ENST00000344851 1979 ntBASIC4.34□□□□□ -1.71
COL6A3P12111 SLC7A6-209ENST00000566454 6308 ntAPPRIS P1 TSL 5 BASIC4.34□□□□□ -1.71
COL6A3P12111 XPO4-201ENST00000255305 9921 ntAPPRIS P2 TSL 1 (best) BASIC4.34□□□□□ -1.71
COL6A3P12111 AC068733.2-201ENST00000605434 1418 ntBASIC4.34□□□□□ -1.71
COL6A3P12111 KLF7-202ENST00000412414 7954 ntTSL 2 BASIC4.34□□□□□ -1.71
COL6A3P12111 ZNF571-203ENST00000451802 2265 ntAPPRIS P1 TSL 1 (best) BASIC4.34□□□□□ -1.71
COL6A3P12111 GABRB2-201ENST00000274547 7409 ntTSL 5 BASIC4.34□□□□□ -1.71
COL6A3P12111 RIMS1-206ENST00000425662 2799 ntTSL 1 (best) BASIC4.34□□□□□ -1.71
COL6A3P12111 CENPJ-205ENST00000545981 4299 ntTSL 2 BASIC4.34□□□□□ -1.71
COL6A3P12111 ZEB2-244ENST00000638007 9140 ntTSL 5 BASIC4.34□□□□□ -1.71
COL6A3P12111 LINC01847-202ENST00000523311 1762 ntTSL 5 BASIC4.34□□□□□ -1.71
COL6A3P12111 AC007681.1-201ENST00000604271 3438 ntTSL 4 BASIC4.34□□□□□ -1.71
COL6A3P12111 RPL9-201ENST00000295955 750 ntAPPRIS P1 TSL 1 (best) BASIC4.34□□□□□ -1.71
COL6A3P12111 UBA52P6-201ENST00000399822 382 ntBASIC4.34□□□□□ -1.71
COL6A3P12111 AL645465.1-201ENST00000417765 642 ntTSL 3 BASIC4.34□□□□□ -1.71
COL6A3P12111 AL451127.1-201ENST00000422909 624 ntTSL 3 BASIC4.34□□□□□ -1.71
COL6A3P12111 EEF1A1P25-201ENST00000495704 1267 ntBASIC4.34□□□□□ -1.71
COL6A3P12111 HPRT1P2-201ENST00000505250 544 ntBASIC4.34□□□□□ -1.71
COL6A3P12111 AC022784.3-202ENST00000517816 826 ntTSL 3 BASIC4.34□□□□□ -1.71
COL6A3P12111 AC018695.5-201ENST00000605872 315 ntBASIC4.34□□□□□ -1.71
COL6A3P12111 LINC01189-201ENST00000428440 3321 ntTSL 2 BASIC4.34□□□□□ -1.71
COL6A3P12111 BCLAF1-201ENST00000353331 7110 ntTSL 5 BASIC4.34□□□□□ -1.71
COL6A3P12111 NAV2-203ENST00000396085 11000 ntAPPRIS P4 TSL 5 BASIC4.34□□□□□ -1.71
COL6A3P12111 POLA1-201ENST00000379059 5440 ntAPPRIS P3 TSL 1 (best) BASIC4.34□□□□□ -1.71
COL6A3P12111 POLA1-206ENST00000611764 5434 ntAPPRIS ALT2 TSL 5 BASIC4.34□□□□□ -1.71
COL6A3P12111 TEX14-203ENST00000389934 4927 ntAPPRIS P4 TSL 1 (best) BASIC4.34□□□□□ -1.71
COL6A3P12111 PRKAA2-201ENST00000371244 9347 ntAPPRIS P2 TSL 1 (best) BASIC4.34□□□□□ -1.71
COL6A3P12111 CCNYL2-202ENST00000637719 3311 ntTSL 2 BASIC4.34□□□□□ -1.72
COL6A3P12111 TFPI-203ENST00000392365 3649 ntAPPRIS P1 TSL 5 BASIC4.34□□□□□ -1.72
COL6A3P12111 KCNMA1-203ENST00000354353 5732 ntAPPRIS ALT2 TSL 5 BASIC4.34□□□□□ -1.72
COL6A3P12111 BMS1-201ENST00000374518 7753 ntAPPRIS P1 TSL 1 (best) BASIC4.34□□□□□ -1.72
COL6A3P12111 MIR548XHG-203ENST00000437492 853 ntTSL 1 (best) BASIC4.34□□□□□ -1.72
COL6A3P12111 AC004692.2-202ENST00000458680 478 ntTSL 3 BASIC4.34□□□□□ -1.72
COL6A3P12111 AP003472.1-201ENST00000519844 644 ntTSL 3 BASIC4.34□□□□□ -1.72
COL6A3P12111 AL157394.1-201ENST00000562983 1224 ntBASIC4.34□□□□□ -1.72
COL6A3P12111 AC024075.3-201ENST00000601687 453 ntTSL 5 BASIC4.34□□□□□ -1.72
COL6A3P12111 AC125494.3-201ENST00000602759 455 ntBASIC4.34□□□□□ -1.72
COL6A3P12111 AC090246.1-201ENST00000616499 426 ntBASIC4.34□□□□□ -1.72
COL6A3P12111 AL603750.1-201ENST00000624216 1717 ntBASIC4.34□□□□□ -1.72
COL6A3P12111 GPATCH2-202ENST00000366935 5851 ntAPPRIS P1 TSL 2 BASIC4.34□□□□□ -1.72
COL6A3P12111 RIF1-201ENST00000243326 15003 ntAPPRIS P3 TSL 1 (best) BASIC4.33□□□□□ -1.72
COL6A3P12111 ZNF43-210ENST00000598381 3004 ntAPPRIS ALT2 TSL 1 (best) BASIC4.33□□□□□ -1.72
COL6A3P12111 AC007066.1-201ENST00000392902 381 ntBASIC4.33□□□□□ -1.72
COL6A3P12111 RPL7P58-201ENST00000402913 758 ntBASIC4.33□□□□□ -1.72
COL6A3P12111 AL121970.1-201ENST00000447557 929 ntTSL 1 (best) BASIC4.33□□□□□ -1.72
COL6A3P12111 AC011595.3-201ENST00000546699 632 ntTSL 3 BASIC4.33□□□□□ -1.72
COL6A3P12111 RN7SL290P-201ENST00000578661 300 ntBASIC4.33□□□□□ -1.72
COL6A3P12111 GALP-203ENST00000590002 150 ntTSL 1 (best) BASIC4.33□□□□□ -1.72
COL6A3P12111 AC015802.3-201ENST00000590241 570 ntTSL 4 BASIC4.33□□□□□ -1.72
COL6A3P12111 AL049844.2-201ENST00000604280 628 ntBASIC4.33□□□□□ -1.72
COL6A3P12111 FP325313.1-201ENST00000638228 703 ntBASIC4.33□□□□□ -1.72
COL6A3P12111 NF1-201ENST00000356175 12362 ntAPPRIS P3 TSL 1 (best) BASIC4.33□□□□□ -1.72
COL6A3P12111 ATP2C1-205ENST00000504381 3498 ntTSL 2 BASIC4.33□□□□□ -1.72
COL6A3P12111 LINC02240-201ENST00000564199 1336 ntTSL 2 BASIC4.33□□□□□ -1.72
COL6A3P12111 RNMT-209ENST00000592764 4108 ntTSL 2 BASIC4.33□□□□□ -1.72
COL6A3P12111 SMG1P1-206ENST00000431681 2913 ntTSL 2 BASIC4.33□□□□□ -1.72
COL6A3P12111 ARHGAP32-203ENST00000524655 8194 ntTSL 1 (best) BASIC4.33□□□□□ -1.72
COL6A3P12111 OR10Z1-202ENST00000641002 6323 ntAPPRIS P1 BASIC4.33□□□□□ -1.72
COL6A3P12111 UBE4A-203ENST00000545354 2149 ntTSL 2 BASIC4.33□□□□□ -1.72
COL6A3P12111 PPP1R12B-216ENST00000608999 15248 ntAPPRIS P1 TSL 1 (best) BASIC4.33□□□□□ -1.72
COL6A3P12111 ZNF254-202ENST00000357002 3967 ntAPPRIS P1 TSL 1 (best) BASIC4.33□□□□□ -1.72
COL6A3P12111 AC006058.1-201ENST00000568686 5067 ntBASIC4.33□□□□□ -1.72
Retrieved 100 of 98,524 protein–RNA pairs in 96.3 ms