Protein–RNA interactions for Protein: P78527

PRKDC, DNA-dependent protein kinase catalytic subunit, humanhuman

Known RBP Predictions only

Length 4,128 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PRKDCP78527 OR10A2-202ENST00000641461 5390 ntAPPRIS P1 BASIC3.04□□□□□ -1.92
PRKDCP78527 PRKCA-202ENST00000413366 8751 ntAPPRIS P1 TSL 1 (best) BASIC3.04□□□□□ -1.92
PRKDCP78527 OR11H1-201ENST00000252835 982 ntAPPRIS P1 BASIC3.04□□□□□ -1.92
PRKDCP78527 SAMD13-204ENST00000370671 724 ntTSL 3 BASIC3.04□□□□□ -1.92
PRKDCP78527 AC007066.1-201ENST00000392902 381 ntBASIC3.04□□□□□ -1.92
PRKDCP78527 MTCO1P45-201ENST00000431457 267 ntBASIC3.04□□□□□ -1.92
PRKDCP78527 NUDT7-202ENST00000437314 930 ntTSL 1 (best) BASIC3.04□□□□□ -1.92
PRKDCP78527 LINC01060-205ENST00000512839 716 ntTSL 1 (best) BASIC3.04□□□□□ -1.92
PRKDCP78527 LINC01969-201ENST00000514468 455 ntTSL 3 BASIC3.04□□□□□ -1.92
PRKDCP78527 AC106895.1-201ENST00000515825 548 ntTSL 4 BASIC3.04□□□□□ -1.92
PRKDCP78527 LINC00535-204ENST00000520513 305 ntTSL 3 BASIC3.04□□□□□ -1.92
PRKDCP78527 AC005868.1-201ENST00000536421 331 ntBASIC3.04□□□□□ -1.92
PRKDCP78527 AC027287.2-201ENST00000547559 592 ntTSL 4 BASIC3.04□□□□□ -1.92
PRKDCP78527 OR11H2-201ENST00000556246 948 ntAPPRIS P1 BASIC3.04□□□□□ -1.92
PRKDCP78527 AC025175.1-201ENST00000606482 759 ntBASIC3.04□□□□□ -1.92
PRKDCP78527 TRIM51GP-201ENST00000534741 1350 ntBASIC3.04□□□□□ -1.92
PRKDCP78527 SRGAP2-203ENST00000573034 6301 ntAPPRIS P3 TSL 1 (best) BASIC3.04□□□□□ -1.92
PRKDCP78527 DTNA-208ENST00000554864 1680 ntAPPRIS ALT2 TSL 1 (best) BASIC3.04□□□□□ -1.92
PRKDCP78527 RGS22-214ENST00000523287 4033 ntAPPRIS ALT2 TSL 2 BASIC3.04□□□□□ -1.92
PRKDCP78527 TRIM66-202ENST00000402157 10086 ntAPPRIS P5 TSL 5 BASIC3.04□□□□□ -1.92
PRKDCP78527 RASGEF1B-207ENST00000509081 3016 ntAPPRIS ALT1 TSL 5 BASIC3.04□□□□□ -1.92
PRKDCP78527 ZBTB21-201ENST00000310826 7449 ntAPPRIS P1 TSL 1 (best) BASIC3.04□□□□□ -1.92
PRKDCP78527 SLC9A6-212ENST00000637195 4858 ntTSL 5 BASIC3.04□□□□□ -1.92
PRKDCP78527 ANKFY1-201ENST00000341657 7418 ntAPPRIS ALT1 TSL 5 BASIC3.04□□□□□ -1.92
PRKDCP78527 OR5K1-201ENST00000332650 1097 ntAPPRIS P1 BASIC3.04□□□□□ -1.92
PRKDCP78527 ANKRD36P1-201ENST00000344424 659 ntBASIC3.04□□□□□ -1.92
PRKDCP78527 RPL7P58-201ENST00000402913 758 ntBASIC3.04□□□□□ -1.92
PRKDCP78527 AC069304.1-201ENST00000491593 704 ntBASIC3.04□□□□□ -1.92
PRKDCP78527 AC083923.2-203ENST00000520512 372 ntTSL 3 BASIC3.04□□□□□ -1.92
PRKDCP78527 MS4A4E-206ENST00000528394 555 ntTSL 1 (best) BASIC3.04□□□□□ -1.92
PRKDCP78527 CSNK1A1P1-202ENST00000563423 981 ntBASIC3.04□□□□□ -1.92
PRKDCP78527 PRPF19P1-201ENST00000584766 898 ntBASIC3.04□□□□□ -1.92
PRKDCP78527 AC012493.2-201ENST00000595083 291 ntBASIC3.04□□□□□ -1.92
PRKDCP78527 AC013412.1-201ENST00000610687 192 ntBASIC3.04□□□□□ -1.92
PRKDCP78527 PIGN-242ENST00000640145 4505 ntAPPRIS P1 TSL 5 BASIC3.04□□□□□ -1.92
PRKDCP78527 A2M-201ENST00000318602 4844 ntAPPRIS P1 TSL 1 (best) BASIC3.04□□□□□ -1.92
PRKDCP78527 HECTD4-211ENST00000550722 15450 ntAPPRIS ALT2 TSL 5 BASIC3.03□□□□□ -1.92
PRKDCP78527 CACNA1E-209ENST00000621551 14886 ntAPPRIS ALT2 TSL 5 BASIC3.03□□□□□ -1.92
PRKDCP78527 LINC01933-204ENST00000524295 3591 ntTSL 2 BASIC3.03□□□□□ -1.92
PRKDCP78527 ZNF568-214ENST00000616085 3542 ntTSL 5 BASIC3.03□□□□□ -1.92
PRKDCP78527 NCOA7-208ENST00000438495 3133 ntAPPRIS ALT1 TSL 1 (best) BASIC3.03□□□□□ -1.92
PRKDCP78527 RBM23-203ENST00000359890 10040 ntAPPRIS P4 TSL 1 (best) BASIC3.03□□□□□ -1.92
PRKDCP78527 SCYL3-202ENST00000367771 6364 ntTSL 1 (best) BASIC3.03□□□□□ -1.92
PRKDCP78527 CFH-201ENST00000359637 1454 ntTSL 1 (best) BASIC3.03□□□□□ -1.92
PRKDCP78527 PCDH15-214ENST00000395446 3948 ntTSL 5 BASIC3.03□□□□□ -1.92
PRKDCP78527 ACEA_U3.1-201ENST00000363057 217 ntBASIC3.03□□□□□ -1.92
PRKDCP78527 Z85994.1-201ENST00000406912 606 ntTSL 2 BASIC3.03□□□□□ -1.92
PRKDCP78527 BTF3P6-201ENST00000448054 499 ntBASIC3.03□□□□□ -1.92
PRKDCP78527 AC017015.1-201ENST00000477387 286 ntBASIC3.03□□□□□ -1.92
PRKDCP78527 AC129510.2-201ENST00000582774 345 ntTSL 5 BASIC3.03□□□□□ -1.92
PRKDCP78527 AL049634.3-201ENST00000604968 457 ntBASIC3.03□□□□□ -1.92
PRKDCP78527 CPNE3-203ENST00000517490 4865 ntAPPRIS P1 TSL 1 (best) BASIC3.03□□□□□ -1.92
PRKDCP78527 ENTPD1-205ENST00000453258 5044 ntTSL 1 (best) BASIC3.03□□□□□ -1.92
PRKDCP78527 AP001642.1-201ENST00000624727 2117 ntBASIC3.03□□□□□ -1.92
PRKDCP78527 ANKRD31-203ENST00000506364 6207 ntAPPRIS ALT2 TSL 5 BASIC3.03□□□□□ -1.92
PRKDCP78527 SLC17A4-201ENST00000377905 3616 ntAPPRIS P1 TSL 1 (best) BASIC3.03□□□□□ -1.92
PRKDCP78527 RPL21P67-201ENST00000402896 478 ntBASIC3.03□□□□□ -1.92
PRKDCP78527 RPS20P14-201ENST00000412545 360 ntBASIC3.03□□□□□ -1.92
PRKDCP78527 COX5BP7-201ENST00000414780 274 ntBASIC3.03□□□□□ -1.92
PRKDCP78527 RPS7P15-201ENST00000415804 584 ntBASIC3.03□□□□□ -1.92
PRKDCP78527 AC007422.1-201ENST00000433065 1008 ntTSL 5 BASIC3.03□□□□□ -1.92
PRKDCP78527 AC003685.1-201ENST00000440430 466 ntTSL 2 BASIC3.03□□□□□ -1.92
PRKDCP78527 AC098799.3-201ENST00000506095 438 ntBASIC3.03□□□□□ -1.92
PRKDCP78527 SNHG1-211ENST00000539921 1071 ntTSL 2 BASIC3.03□□□□□ -1.92
PRKDCP78527 AC011595.3-201ENST00000546699 632 ntTSL 3 BASIC3.03□□□□□ -1.92
PRKDCP78527 PEX2-201ENST00000357039 4317 ntAPPRIS P1 TSL 1 (best) BASIC3.03□□□□□ -1.92
PRKDCP78527 TPTE2-205ENST00000400230 1793 ntAPPRIS P1 TSL 5 BASIC3.03□□□□□ -1.92
PRKDCP78527 LINC01630-206ENST00000635103 4292 ntTSL 5 BASIC3.03□□□□□ -1.92
PRKDCP78527 CLEC2D-203ENST00000290855 5279 ntAPPRIS P3 TSL 1 (best) BASIC3.03□□□□□ -1.92
PRKDCP78527 BACH1-202ENST00000399921 5769 ntAPPRIS P1 TSL 1 (best) BASIC3.03□□□□□ -1.92
PRKDCP78527 ANKRD34C-201ENST00000421388 4951 ntAPPRIS P1 BASIC3.03□□□□□ -1.92
PRKDCP78527 LINC01566-202ENST00000569242 2801 ntTSL 1 (best) BASIC3.03□□□□□ -1.92
PRKDCP78527 PPP1R9A-205ENST00000424654 4058 ntTSL 5 BASIC3.03□□□□□ -1.92
PRKDCP78527 MMP13-201ENST00000260302 2716 ntAPPRIS P1 TSL 1 (best) BASIC3.03□□□□□ -1.92
PRKDCP78527 NR3C2-202ENST00000344721 5712 ntAPPRIS P1 TSL 5 BASIC3.03□□□□□ -1.92
PRKDCP78527 GRIA2-202ENST00000296526 5621 ntAPPRIS P3 TSL 1 (best) BASIC3.03□□□□□ -1.92
PRKDCP78527 PCDH18-203ENST00000507846 4625 ntTSL 1 (best) BASIC3.03□□□□□ -1.92
PRKDCP78527 SGIP1-203ENST00000371037 7768 ntAPPRIS P3 TSL 1 (best) BASIC3.03□□□□□ -1.92
PRKDCP78527 DSPP-201ENST00000282478 4281 ntAPPRIS P1 TSL 5 BASIC3.03□□□□□ -1.92
PRKDCP78527 RNU1-33P-201ENST00000364249 162 ntBASIC3.03□□□□□ -1.93
PRKDCP78527 AC093719.1-202ENST00000392735 373 ntBASIC3.03□□□□□ -1.93
PRKDCP78527 SPTSSB-202ENST00000497137 880 ntAPPRIS P1 TSL 3 BASIC3.03□□□□□ -1.93
PRKDCP78527 AP001775.2-201ENST00000531710 334 ntTSL 2 BASIC3.03□□□□□ -1.93
PRKDCP78527 AC022469.1-201ENST00000555291 656 ntTSL 3 BASIC3.03□□□□□ -1.93
PRKDCP78527 AC026367.3-201ENST00000619032 590 ntBASIC3.03□□□□□ -1.93
PRKDCP78527 AC015804.1-201ENST00000622935 435 ntBASIC3.03□□□□□ -1.93
PRKDCP78527 PAPPA-AS1-201ENST00000445861 2450 ntBASIC3.03□□□□□ -1.93
PRKDCP78527 TMEM132B-206ENST00000613307 9659 ntAPPRIS ALT2 TSL 1 (best) BASIC3.03□□□□□ -1.93
PRKDCP78527 AL133284.1-201ENST00000423715 4996 ntTSL 1 (best) BASIC3.03□□□□□ -1.93
PRKDCP78527 HNF4G-203ENST00000396423 4209 ntAPPRIS P3 TSL 1 (best) BASIC3.02□□□□□ -1.93
PRKDCP78527 SREK1-203ENST00000380918 2433 ntTSL 1 (best) BASIC3.02□□□□□ -1.93
PRKDCP78527 ZBTB34-202ENST00000373452 6528 ntAPPRIS P1 BASIC3.02□□□□□ -1.93
PRKDCP78527 CLSTN2-201ENST00000458420 14202 ntAPPRIS P1 TSL 1 (best) BASIC3.02□□□□□ -1.93
PRKDCP78527 U1.1-201ENST00000384101 164 ntBASIC3.02□□□□□ -1.93
PRKDCP78527 AC017048.1-201ENST00000412153 495 ntTSL 2 BASIC3.02□□□□□ -1.93
PRKDCP78527 AL158156.1-201ENST00000422509 473 ntBASIC3.02□□□□□ -1.93
PRKDCP78527 AC010132.1-201ENST00000433315 561 ntTSL 4 BASIC3.02□□□□□ -1.93
PRKDCP78527 AL732323.1-201ENST00000445897 456 ntTSL 3 BASIC3.02□□□□□ -1.93
PRKDCP78527 YPEL5P3-201ENST00000547227 352 ntBASIC3.02□□□□□ -1.93
PRKDCP78527 AC244505.7-201ENST00000599675 272 ntBASIC3.02□□□□□ -1.93
Retrieved 100 of 98,524 protein–RNA pairs in 73.4 ms