Protein–RNA interactions for Protein: P55318

FOXA3, Hepatocyte nuclear factor 3-gamma, humanhuman

Predicted RBP Predictions only

Length 350 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA3P55318 KARSP3-201ENST00000571212 1504 ntBASIC3.34□□□□□ -1.87
FOXA3P55318 ZNF682-209ENST00000597972 1538 ntAPPRIS ALT2 TSL 1 (best) BASIC3.34□□□□□ -1.87
FOXA3P55318 SLC35F5-213ENST00000638402 1554 ntTSL 5 BASIC3.34□□□□□ -1.87
FOXA3P55318 MAP3K19-203ENST00000375845 4369 ntAPPRIS P3 TSL 1 (best) BASIC3.34□□□□□ -1.87
FOXA3P55318 PCDH15-203ENST00000373955 4230 ntTSL 1 (best) BASIC3.34□□□□□ -1.87
FOXA3P55318 SEC23A-202ENST00000537403 4215 ntTSL 2 BASIC3.34□□□□□ -1.87
FOXA3P55318 PREPL-207ENST00000409957 4703 ntTSL 5 BASIC3.34□□□□□ -1.87
FOXA3P55318 PREPL-206ENST00000409936 5212 ntAPPRIS P1 TSL 1 (best) BASIC3.34□□□□□ -1.87
FOXA3P55318 ZEB1-205ENST00000446923 6267 ntAPPRIS ALT2 TSL 5 BASIC3.34□□□□□ -1.87
FOXA3P55318 ASAH1-265ENST00000637922 2297 ntTSL 5 BASIC3.34□□□□□ -1.87
FOXA3P55318 CDKL3-209ENST00000523054 1775 ntTSL 2 BASIC3.34□□□□□ -1.87
FOXA3P55318 OR51F2-201ENST00000322110 993 ntAPPRIS ALT2 BASIC3.34□□□□□ -1.87
FOXA3P55318 BANF2-202ENST00000377805 444 ntAPPRIS P1 TSL 1 (best) BASIC3.34□□□□□ -1.87
FOXA3P55318 SDHCP2-201ENST00000398565 501 ntBASIC3.34□□□□□ -1.87
FOXA3P55318 ZSCAN12P1-201ENST00000406489 419 ntBASIC3.34□□□□□ -1.87
FOXA3P55318 SCP2-205ENST00000408941 1298 ntTSL 2 BASIC3.34□□□□□ -1.87
FOXA3P55318 GJA6P-201ENST00000415117 1042 ntBASIC3.34□□□□□ -1.87
FOXA3P55318 TRAPPC2P10-201ENST00000415662 323 ntBASIC3.34□□□□□ -1.87
FOXA3P55318 VN1R3-201ENST00000418822 919 ntBASIC3.34□□□□□ -1.87
FOXA3P55318 LINC01341-201ENST00000419361 552 ntTSL 2 BASIC3.34□□□□□ -1.87
FOXA3P55318 RBMY1KP-201ENST00000423480 476 ntBASIC3.34□□□□□ -1.87
FOXA3P55318 LINC02257-202ENST00000433576 720 ntTSL 5 BASIC3.34□□□□□ -1.87
FOXA3P55318 SPRYD7P1-201ENST00000443861 570 ntBASIC3.34□□□□□ -1.87
FOXA3P55318 ST6GAL2-IT1-201ENST00000446058 388 ntTSL 2 BASIC3.34□□□□□ -1.87
FOXA3P55318 AC107072.1-201ENST00000449007 110 ntTSL 3 BASIC3.34□□□□□ -1.87
FOXA3P55318 AC108463.1-201ENST00000450258 347 ntBASIC3.34□□□□□ -1.87
FOXA3P55318 EIF4A2P2-201ENST00000455776 1070 ntBASIC3.34□□□□□ -1.87
FOXA3P55318 AC010884.1-201ENST00000456519 642 ntTSL 3 BASIC3.34□□□□□ -1.87
FOXA3P55318 AC011287.2-201ENST00000456809 842 ntTSL 5 BASIC3.34□□□□□ -1.87
FOXA3P55318 AC098587.1-201ENST00000508241 540 ntTSL 4 BASIC3.34□□□□□ -1.87
FOXA3P55318 RNU4ATAC6P-201ENST00000516592 126 ntBASIC3.34□□□□□ -1.87
FOXA3P55318 AC018682.2-201ENST00000517716 399 ntTSL 5 BASIC3.34□□□□□ -1.87
FOXA3P55318 AC124242.1-205ENST00000517798 646 ntTSL 5 BASIC3.34□□□□□ -1.87
FOXA3P55318 AC093331.2-201ENST00000520459 677 ntTSL 3 BASIC3.34□□□□□ -1.87
FOXA3P55318 AC025035.1-201ENST00000551571 894 ntTSL 2 BASIC3.34□□□□□ -1.87
FOXA3P55318 AC025423.4-201ENST00000553141 785 ntTSL 3 BASIC3.34□□□□□ -1.87
FOXA3P55318 LINC02170-201ENST00000561519 555 ntTSL 4 BASIC3.34□□□□□ -1.87
FOXA3P55318 PSMG2-204ENST00000585331 983 ntTSL 1 (best) BASIC3.34□□□□□ -1.87
FOXA3P55318 AL157938.2-205ENST00000586290 891 ntTSL 5 BASIC3.34□□□□□ -1.87
FOXA3P55318 AC105094.1-201ENST00000588245 316 ntTSL 3 BASIC3.34□□□□□ -1.87
FOXA3P55318 AC008521.2-201ENST00000591021 259 ntBASIC3.34□□□□□ -1.87
FOXA3P55318 SATB1-AS1-222ENST00000600177 751 ntTSL 5 BASIC3.34□□□□□ -1.87
FOXA3P55318 FAM27B-201ENST00000610601 213 ntBASIC3.34□□□□□ -1.87
FOXA3P55318 AC126915.2-201ENST00000610957 190 ntBASIC3.34□□□□□ -1.87
FOXA3P55318 AC126175.1-201ENST00000617041 758 ntBASIC3.34□□□□□ -1.87
FOXA3P55318 AC007546.2-201ENST00000623996 360 ntBASIC3.34□□□□□ -1.87
FOXA3P55318 AC008785.1-201ENST00000624475 456 ntBASIC3.34□□□□□ -1.87
FOXA3P55318 LINC00976-202ENST00000628064 534 ntTSL 5 BASIC3.34□□□□□ -1.87
FOXA3P55318 SMARCA2-231ENST00000634931 939 ntTSL 5 BASIC3.34□□□□□ -1.87
FOXA3P55318 HEATR5B-201ENST00000233099 6905 ntAPPRIS P1 TSL 1 (best) BASIC3.34□□□□□ -1.87
FOXA3P55318 IFI16-201ENST00000295809 2867 ntAPPRIS ALT2 TSL 5 BASIC3.34□□□□□ -1.87
FOXA3P55318 AL442639.1-201ENST00000625030 1899 ntBASIC3.34□□□□□ -1.87
FOXA3P55318 ARL15-202ENST00000504924 2486 ntAPPRIS P2 TSL 1 (best) BASIC3.34□□□□□ -1.88
FOXA3P55318 ARL15-207ENST00000620747 2486 ntAPPRIS ALT1 TSL 5 BASIC3.34□□□□□ -1.88
FOXA3P55318 GLIPR1-201ENST00000266659 5877 ntAPPRIS P1 TSL 1 (best) BASIC3.34□□□□□ -1.88
FOXA3P55318 PHKBP1-201ENST00000450951 1951 ntBASIC3.34□□□□□ -1.88
FOXA3P55318 PATJ-202ENST00000316485 3657 ntTSL 5 BASIC3.34□□□□□ -1.88
FOXA3P55318 SGO1-AS1-203ENST00000455626 2041 ntTSL 1 (best) BASIC3.34□□□□□ -1.88
FOXA3P55318 UBE4A-201ENST00000252108 6103 ntAPPRIS ALT1 TSL 1 (best) BASIC3.34□□□□□ -1.88
FOXA3P55318 ZNF733P-202ENST00000444809 1573 ntBASIC3.34□□□□□ -1.88
FOXA3P55318 ABCC9-201ENST00000261200 8293 ntAPPRIS P5 TSL 5 BASIC3.33□□□□□ -1.88
FOXA3P55318 AC090017.1-201ENST00000548612 1779 ntBASIC3.33□□□□□ -1.88
FOXA3P55318 ZNF638-203ENST00000409544 6821 ntAPPRIS P1 TSL 1 (best) BASIC3.33□□□□□ -1.88
FOXA3P55318 PPP1R9A-208ENST00000456331 10090 ntTSL 1 (best) BASIC3.33□□□□□ -1.88
FOXA3P55318 AC139769.1-204ENST00000472297 1931 ntBASIC3.33□□□□□ -1.88
FOXA3P55318 CENPF-201ENST00000366955 10307 ntAPPRIS P1 TSL 1 (best) BASIC3.33□□□□□ -1.88
FOXA3P55318 OSBPL8-202ENST00000393249 7047 ntAPPRIS ALT1 TSL 1 (best) BASIC3.33□□□□□ -1.88
FOXA3P55318 CRYZ-203ENST00000370871 1292 ntTSL 1 (best) BASIC3.33□□□□□ -1.88
FOXA3P55318 KRTAP19-8-201ENST00000382822 318 ntAPPRIS P1 BASIC3.33□□□□□ -1.88
FOXA3P55318 Z98745.1-201ENST00000402553 494 ntBASIC3.33□□□□□ -1.88
FOXA3P55318 RN7SKP267-201ENST00000410381 285 ntBASIC3.33□□□□□ -1.88
FOXA3P55318 AL603962.1-201ENST00000413148 436 ntTSL 5 BASIC3.33□□□□□ -1.88
FOXA3P55318 AC004415.1-201ENST00000422697 449 ntTSL 3 BASIC3.33□□□□□ -1.88
FOXA3P55318 MTND2P11-201ENST00000423638 648 ntBASIC3.33□□□□□ -1.88
FOXA3P55318 SEC63P1-201ENST00000425785 1258 ntBASIC3.33□□□□□ -1.88
FOXA3P55318 OR2B7P-201ENST00000429302 934 ntBASIC3.33□□□□□ -1.88
FOXA3P55318 AF130359.1-201ENST00000444868 438 ntTSL 3 BASIC3.33□□□□□ -1.88
FOXA3P55318 AL050338.1-201ENST00000445585 786 ntTSL 3 BASIC3.33□□□□□ -1.88
FOXA3P55318 MYO5BP2-201ENST00000449815 1277 ntBASIC3.33□□□□□ -1.88
FOXA3P55318 AL133477.1-201ENST00000457472 514 ntBASIC3.33□□□□□ -1.88
FOXA3P55318 AP006216.2-201ENST00000457746 333 ntTSL 5 BASIC3.33□□□□□ -1.88
FOXA3P55318 RN7SL741P-201ENST00000482473 289 ntBASIC3.33□□□□□ -1.88
FOXA3P55318 AC099509.1-201ENST00000502437 652 ntTSL 2 BASIC3.33□□□□□ -1.88
FOXA3P55318 AC024558.1-201ENST00000505008 528 ntBASIC3.33□□□□□ -1.88
FOXA3P55318 AC079209.1-202ENST00000521953 522 ntTSL 3 BASIC3.33□□□□□ -1.88
FOXA3P55318 AC104212.3-201ENST00000522044 444 ntTSL 3 BASIC3.33□□□□□ -1.88
FOXA3P55318 OSGEPL1-AS1-203ENST00000523895 567 ntTSL 4 BASIC3.33□□□□□ -1.88
FOXA3P55318 AC135001.1-201ENST00000544546 283 ntBASIC3.33□□□□□ -1.88
FOXA3P55318 AC068789.1-201ENST00000547942 577 ntTSL 2 BASIC3.33□□□□□ -1.88
FOXA3P55318 AC107016.1-201ENST00000550463 337 ntBASIC3.33□□□□□ -1.88
FOXA3P55318 SNORD39.2-201ENST00000579995 76 ntBASIC3.33□□□□□ -1.88
FOXA3P55318 AC090844.2-203ENST00000582263 632 ntTSL 5 BASIC3.33□□□□□ -1.88
FOXA3P55318 AL354733.2-210ENST00000586211 647 ntTSL 5 BASIC3.33□□□□□ -1.88
FOXA3P55318 AC006504.5-202ENST00000586784 656 ntTSL 2 BASIC3.33□□□□□ -1.88
FOXA3P55318 AC006504.5-201ENST00000588122 655 ntTSL 5 BASIC3.33□□□□□ -1.88
FOXA3P55318 AC006504.7-201ENST00000592806 924 ntTSL 3 BASIC3.33□□□□□ -1.88
FOXA3P55318 AC008536.1-201ENST00000602872 669 ntBASIC3.33□□□□□ -1.88
FOXA3P55318 AC107031.1-201ENST00000604939 347 ntTSL 2 BASIC3.33□□□□□ -1.88
FOXA3P55318 AC012603.1-201ENST00000606424 528 ntBASIC3.33□□□□□ -1.88
FOXA3P55318 AC004477.3-201ENST00000614061 590 ntBASIC3.33□□□□□ -1.88
Retrieved 100 of 98,524 protein–RNA pairs in 99.3 ms