Protein–RNA interactions for Protein: P35499

SCN4A, Sodium channel protein type 4 subunit alpha, humanhuman

Predictions only

Length 1,836 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCN4AP35499 STXBP4-202ENST00000398391 2160 ntTSL 1 (best) BASIC5.31□□□□□ -1.56
SCN4AP35499 AC023632.6-201ENST00000624338 2177 ntBASIC5.31□□□□□ -1.56
SCN4AP35499 LCMT1-AS2-202ENST00000565214 5666 ntBASIC5.31□□□□□ -1.56
SCN4AP35499 IBTK-206ENST00000503631 3560 ntTSL 1 (best) BASIC5.3□□□□□ -1.56
SCN4AP35499 IQCH-206ENST00000546225 3112 ntTSL 5 BASIC5.3□□□□□ -1.56
SCN4AP35499 FAT4-202ENST00000394329 16123 ntAPPRIS P1 TSL 5 BASIC5.3□□□□□ -1.56
SCN4AP35499 SLC17A1-204ENST00000476801 1704 ntAPPRIS P1 TSL 2 BASIC5.3□□□□□ -1.56
SCN4AP35499 OR2B3-201ENST00000377173 1106 ntAPPRIS P1 BASIC5.3□□□□□ -1.56
SCN4AP35499 AC018644.1-201ENST00000429934 551 ntBASIC5.3□□□□□ -1.56
SCN4AP35499 ZIC4-AS1-201ENST00000462168 268 ntTSL 5 BASIC5.3□□□□□ -1.56
SCN4AP35499 PGBD4P4-201ENST00000509673 613 ntBASIC5.3□□□□□ -1.56
SCN4AP35499 AC022874.1-201ENST00000526382 550 ntTSL 3 BASIC5.3□□□□□ -1.56
SCN4AP35499 AC078889.1-201ENST00000536412 523 ntTSL 2 BASIC5.3□□□□□ -1.56
SCN4AP35499 LSM3P2-201ENST00000551246 273 ntBASIC5.3□□□□□ -1.56
SCN4AP35499 AC026462.4-201ENST00000565229 951 ntTSL 3 BASIC5.3□□□□□ -1.56
SCN4AP35499 AC004862.1-203ENST00000598433 1020 ntTSL 5 BASIC5.3□□□□□ -1.56
SCN4AP35499 AL049840.6-202ENST00000603373 279 ntBASIC5.3□□□□□ -1.56
SCN4AP35499 AL357559.1-201ENST00000622228 274 ntBASIC5.3□□□□□ -1.56
SCN4AP35499 CNTNAP4-205ENST00000476707 4355 ntTSL 2 BASIC5.3□□□□□ -1.56
SCN4AP35499 AC011604.2-201ENST00000381541 2268 ntAPPRIS ALT2 TSL 2 BASIC5.3□□□□□ -1.56
SCN4AP35499 AC139769.2-201ENST00000599944 2291 ntTSL 2 BASIC5.3□□□□□ -1.56
SCN4AP35499 AC015813.1-202ENST00000577267 4056 ntTSL 2 BASIC5.3□□□□□ -1.56
SCN4AP35499 ZNF207-203ENST00000394670 13781 ntAPPRIS ALT1 TSL 1 (best) BASIC5.3□□□□□ -1.56
SCN4AP35499 ZNF704-201ENST00000327835 14386 ntAPPRIS P1 TSL 1 (best) BASIC5.3□□□□□ -1.56
SCN4AP35499 FILIP1-201ENST00000237172 4580 ntAPPRIS P1 TSL 1 (best) BASIC5.3□□□□□ -1.56
SCN4AP35499 FOXP2-226ENST00000635638 2598 ntAPPRIS ALT1 TSL 5 BASIC5.3□□□□□ -1.56
SCN4AP35499 KIF3A-203ENST00000403231 2181 ntTSL 2 BASIC5.3□□□□□ -1.56
SCN4AP35499 EMSY-201ENST00000334736 5508 ntAPPRIS P3 TSL 5 BASIC5.3□□□□□ -1.56
SCN4AP35499 POSTN-210ENST00000541481 3113 ntTSL 1 (best) BASIC5.3□□□□□ -1.56
SCN4AP35499 DSE-204ENST00000452085 10586 ntAPPRIS P1 TSL 1 (best) BASIC5.3□□□□□ -1.56
SCN4AP35499 KLHL28-202ENST00000396128 6545 ntAPPRIS P1 TSL 1 (best) BASIC5.3□□□□□ -1.56
SCN4AP35499 PARD3B-214ENST00000622699 7442 ntTSL 5 BASIC5.3□□□□□ -1.56
SCN4AP35499 WDR35-202ENST00000345530 6960 ntAPPRIS ALT1 TSL 1 (best) BASIC5.3□□□□□ -1.56
SCN4AP35499 CGA-201ENST00000369582 729 ntTSL 5 BASIC5.3□□□□□ -1.56
SCN4AP35499 MIR7-3-201ENST00000384898 110 ntBASIC5.3□□□□□ -1.56
SCN4AP35499 MIR483-201ENST00000385070 76 ntBASIC5.3□□□□□ -1.56
SCN4AP35499 SNRPFP1-201ENST00000414761 252 ntBASIC5.3□□□□□ -1.56
SCN4AP35499 AL157831.1-201ENST00000426134 473 ntBASIC5.3□□□□□ -1.56
SCN4AP35499 COX6B1P7-201ENST00000430845 235 ntBASIC5.3□□□□□ -1.56
SCN4AP35499 RPL5P32-201ENST00000454085 879 ntBASIC5.3□□□□□ -1.56
SCN4AP35499 RNA5SP103-201ENST00000459503 118 ntBASIC5.3□□□□□ -1.56
SCN4AP35499 LINC02045-201ENST00000460324 679 ntTSL 3 BASIC5.3□□□□□ -1.56
SCN4AP35499 AP000462.1-201ENST00000535704 818 ntTSL 3 BASIC5.3□□□□□ -1.56
SCN4AP35499 AC090023.2-201ENST00000540875 545 ntTSL 3 BASIC5.3□□□□□ -1.56
SCN4AP35499 TTN-AS1-243ENST00000591867 748 ntTSL 5 BASIC5.3□□□□□ -1.56
SCN4AP35499 LSM1P2-201ENST00000604911 322 ntBASIC5.3□□□□□ -1.56
SCN4AP35499 AC096577.2-201ENST00000611455 153 ntBASIC5.3□□□□□ -1.56
SCN4AP35499 CR392039.5-201ENST00000623201 510 ntBASIC5.3□□□□□ -1.56
SCN4AP35499 COPG2-201ENST00000330992 3073 ntTSL 1 (best) BASIC5.3□□□□□ -1.56
SCN4AP35499 AL603750.1-201ENST00000624216 1717 ntBASIC5.29□□□□□ -1.56
SCN4AP35499 FAP-214ENST00000627638 2569 ntAPPRIS ALT1 TSL 5 BASIC5.29□□□□□ -1.56
SCN4AP35499 OR5A2-203ENST00000641673 9444 ntAPPRIS P1 BASIC5.29□□□□□ -1.56
SCN4AP35499 OR8H2-201ENST00000313503 3088 ntAPPRIS P2 BASIC5.29□□□□□ -1.56
SCN4AP35499 AFF2-201ENST00000286437 12280 ntTSL 2 BASIC5.29□□□□□ -1.56
SCN4AP35499 AL133243.3-201ENST00000617415 3004 ntBASIC5.29□□□□□ -1.56
SCN4AP35499 AC097512.1-201ENST00000511453 1309 ntTSL 3 BASIC5.29□□□□□ -1.56
SCN4AP35499 TM4SF1-202ENST00000472441 3115 ntTSL 2 BASIC5.29□□□□□ -1.56
SCN4AP35499 CLUL1-208ENST00000581619 2449 ntTSL 2 BASIC5.29□□□□□ -1.56
SCN4AP35499 OR1L4-201ENST00000259466 936 ntAPPRIS P1 BASIC5.29□□□□□ -1.56
SCN4AP35499 CYTOR-204ENST00000409898 560 ntTSL 5 BASIC5.29□□□□□ -1.56
SCN4AP35499 SF3B1-202ENST00000409915 600 ntTSL 2 BASIC5.29□□□□□ -1.56
SCN4AP35499 AL031674.1-202ENST00000413070 465 ntTSL 3 BASIC5.29□□□□□ -1.56
SCN4AP35499 AC099794.1-201ENST00000450811 447 ntTSL 3 BASIC5.29□□□□□ -1.56
SCN4AP35499 MIR4435-2HG-214ENST00000453478 560 ntTSL 4 BASIC5.29□□□□□ -1.56
SCN4AP35499 AP001439.1-201ENST00000455275 392 ntTSL 2 BASIC5.29□□□□□ -1.56
SCN4AP35499 AL591473.1-201ENST00000464297 313 ntBASIC5.29□□□□□ -1.56
SCN4AP35499 AC008629.1-202ENST00000504820 525 ntTSL 4 BASIC5.29□□□□□ -1.56
SCN4AP35499 NPM1P21-201ENST00000513394 762 ntBASIC5.29□□□□□ -1.56
SCN4AP35499 RNA5SP49-201ENST00000516450 115 ntBASIC5.29□□□□□ -1.56
SCN4AP35499 AP000619.3-201ENST00000535634 1127 ntBASIC5.29□□□□□ -1.56
SCN4AP35499 LINC02281-201ENST00000549013 375 ntTSL 3 BASIC5.29□□□□□ -1.56
SCN4AP35499 FKBP1BP1-201ENST00000553366 325 ntBASIC5.29□□□□□ -1.56
SCN4AP35499 MIR3936-201ENST00000584304 110 ntBASIC5.29□□□□□ -1.56
SCN4AP35499 AL354984.3-201ENST00000604803 325 ntBASIC5.29□□□□□ -1.56
SCN4AP35499 AC099669.2-201ENST00000616549 437 ntBASIC5.29□□□□□ -1.56
SCN4AP35499 ARHGAP42-201ENST00000298815 4752 ntAPPRIS P1 TSL 5 BASIC5.29□□□□□ -1.56
SCN4AP35499 KMT2E-216ENST00000622386 1588 ntTSL 5 BASIC5.29□□□□□ -1.56
SCN4AP35499 DNAJC16-210ENST00000616884 5882 ntTSL 1 (best) BASIC5.29□□□□□ -1.56
SCN4AP35499 ADGRL3-210ENST00000508946 4758 ntAPPRIS ALT2 TSL 5 BASIC5.29□□□□□ -1.56
SCN4AP35499 CYP3A43-201ENST00000222382 1515 ntAPPRIS P4 TSL 1 (best) BASIC5.29□□□□□ -1.56
SCN4AP35499 ZNF525-201ENST00000467003 6107 ntTSL 4 BASIC5.28□□□□□ -1.56
SCN4AP35499 ARFGEF2-201ENST00000371917 8852 ntAPPRIS P1 TSL 1 (best) BASIC5.28□□□□□ -1.56
SCN4AP35499 DTNA-206ENST00000399121 6490 ntAPPRIS ALT2 TSL 1 (best) BASIC5.28□□□□□ -1.56
SCN4AP35499 CSPP1-203ENST00000519668 3715 ntAPPRIS ALT2 TSL 1 (best) BASIC5.28□□□□□ -1.56
SCN4AP35499 MYO5A-209ENST00000553916 5989 ntTSL 5 BASIC5.28□□□□□ -1.56
SCN4AP35499 PDC-201ENST00000391997 1242 ntAPPRIS P1 TSL 1 (best) BASIC5.28□□□□□ -1.56
SCN4AP35499 AC019064.1-201ENST00000414796 499 ntTSL 2 BASIC5.28□□□□□ -1.56
SCN4AP35499 PCNPP4-201ENST00000414817 517 ntBASIC5.28□□□□□ -1.56
SCN4AP35499 MTCO1P54-201ENST00000430139 712 ntBASIC5.28□□□□□ -1.56
SCN4AP35499 AL035246.1-201ENST00000433554 1255 ntBASIC5.28□□□□□ -1.56
SCN4AP35499 EIF4A2P2-201ENST00000455776 1070 ntBASIC5.28□□□□□ -1.56
SCN4AP35499 AP001961.1-201ENST00000515782 526 ntTSL 3 BASIC5.28□□□□□ -1.56
SCN4AP35499 AC009435.1-201ENST00000519555 574 ntTSL 4 BASIC5.28□□□□□ -1.56
SCN4AP35499 TBCA-207ENST00000520039 157 ntTSL 3 BASIC5.28□□□□□ -1.56
SCN4AP35499 NR1H4-204ENST00000546380 565 ntTSL 3 BASIC5.28□□□□□ -1.56
SCN4AP35499 BPIFA4P-203ENST00000603168 689 ntBASIC5.28□□□□□ -1.56
SCN4AP35499 AC007179.3-201ENST00000604976 235 ntBASIC5.28□□□□□ -1.56
SCN4AP35499 SNORA51-201ENST00000606420 132 ntBASIC5.28□□□□□ -1.56
SCN4AP35499 Z95327.3-201ENST00000610385 572 ntBASIC5.28□□□□□ -1.56
SCN4AP35499 GABRG1-201ENST00000295452 6785 ntAPPRIS P1 TSL 1 (best) BASIC5.28□□□□□ -1.56
Retrieved 100 of 98,524 protein–RNA pairs in 88.2 ms