Protein–RNA interactions for Protein: O75351

VPS4B, Vacuolar protein sorting-associated protein 4B, humanhuman

Predictions only

Length 444 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4BO75351 AC131274.1-201ENST00000582507 254 ntTSL 3 BASIC5.45□□□□□ -1.54
VPS4BO75351 AC008764.2-201ENST00000597226 376 ntTSL 5 BASIC5.45□□□□□ -1.54
VPS4BO75351 AL133507.1-201ENST00000605269 557 ntBASIC5.45□□□□□ -1.54
VPS4BO75351 AC122108.2-201ENST00000611946 526 ntBASIC5.45□□□□□ -1.54
VPS4BO75351 MIR7155-201ENST00000615925 56 ntBASIC5.45□□□□□ -1.54
VPS4BO75351 AC007342.8-201ENST00000623278 678 ntBASIC5.45□□□□□ -1.54
VPS4BO75351 LGI1-209ENST00000627699 664 ntTSL 3 BASIC5.45□□□□□ -1.54
VPS4BO75351 SLC8A1-AS1-239ENST00000631142 623 ntTSL 5 BASIC5.45□□□□□ -1.54
VPS4BO75351 AC103706.2-201ENST00000638080 240 ntBASIC5.45□□□□□ -1.54
VPS4BO75351 AL138828.1-203ENST00000419926 1570 ntTSL 1 (best) BASIC5.45□□□□□ -1.54
VPS4BO75351 ABCC9-204ENST00000538350 2672 ntTSL 2 BASIC5.45□□□□□ -1.54
VPS4BO75351 KCTD16-201ENST00000507359 13950 ntAPPRIS P1 TSL 1 (best) BASIC5.45□□□□□ -1.54
VPS4BO75351 SIAH1-202ENST00000380006 3352 ntAPPRIS P3 BASIC5.45□□□□□ -1.54
VPS4BO75351 ZNF420-202ENST00000337995 3535 ntAPPRIS P1 TSL 1 (best) BASIC5.45□□□□□ -1.54
VPS4BO75351 ZNF736P9Y-201ENST00000439586 1345 ntBASIC5.45□□□□□ -1.54
VPS4BO75351 DDX18P5-201ENST00000534547 1306 ntBASIC5.45□□□□□ -1.54
VPS4BO75351 KLHL28-201ENST00000355081 2177 ntTSL 1 (best) BASIC5.45□□□□□ -1.54
VPS4BO75351 IKZF2-207ENST00000434687 3888 ntAPPRIS P2 TSL 5 BASIC5.45□□□□□ -1.54
VPS4BO75351 LINC02355-201ENST00000503100 2520 ntTSL 1 (best) BASIC5.44□□□□□ -1.54
VPS4BO75351 ZNF230-201ENST00000429154 4115 ntAPPRIS P1 TSL 1 (best) BASIC5.44□□□□□ -1.54
VPS4BO75351 BX005019.1-201ENST00000561881 1810 ntBASIC5.44□□□□□ -1.54
VPS4BO75351 MROH2B-203ENST00000506092 3745 ntTSL 2 BASIC5.44□□□□□ -1.54
VPS4BO75351 CAV1-205ENST00000405348 2443 ntAPPRIS ALT1 TSL 5 BASIC5.44□□□□□ -1.54
VPS4BO75351 ZNF704-201ENST00000327835 14386 ntAPPRIS P1 TSL 1 (best) BASIC5.44□□□□□ -1.54
VPS4BO75351 RAB3GAP1-207ENST00000539493 3161 ntTSL 5 BASIC5.44□□□□□ -1.54
VPS4BO75351 USP8-201ENST00000307179 4243 ntAPPRIS P1 TSL 1 (best) BASIC5.44□□□□□ -1.54
VPS4BO75351 CDC42BPA-204ENST00000366767 9320 ntTSL 1 (best) BASIC5.44□□□□□ -1.54
VPS4BO75351 FAM133CP-201ENST00000332869 704 ntBASIC5.44□□□□□ -1.54
VPS4BO75351 TRIQK-201ENST00000378861 1596 ntAPPRIS P1 TSL 1 (best) BASIC5.44□□□□□ -1.54
VPS4BO75351 SEC61A2-203ENST00000379017 600 ntTSL 5 BASIC5.44□□□□□ -1.54
VPS4BO75351 RNU6-413P-201ENST00000384115 107 ntBASIC5.44□□□□□ -1.54
VPS4BO75351 FAM26D-203ENST00000405399 1165 ntTSL 1 (best) BASIC5.44□□□□□ -1.54
VPS4BO75351 MIR1286-201ENST00000408112 78 ntBASIC5.44□□□□□ -1.54
VPS4BO75351 DPPA2P3-201ENST00000411853 655 ntBASIC5.44□□□□□ -1.54
VPS4BO75351 AF015720.1-201ENST00000412240 349 ntTSL 3 BASIC5.44□□□□□ -1.54
VPS4BO75351 RAP1BP1-201ENST00000412709 553 ntBASIC5.44□□□□□ -1.54
VPS4BO75351 AC105402.1-201ENST00000413336 545 ntBASIC5.44□□□□□ -1.54
VPS4BO75351 AL354890.1-201ENST00000413730 346 ntBASIC5.44□□□□□ -1.54
VPS4BO75351 AL591468.1-201ENST00000417932 573 ntTSL 3 BASIC5.44□□□□□ -1.54
VPS4BO75351 PCDH9-AS2-201ENST00000419371 538 ntTSL 3 BASIC5.44□□□□□ -1.54
VPS4BO75351 ZNF885P-201ENST00000420174 1098 ntBASIC5.44□□□□□ -1.54
VPS4BO75351 ITGA9-AS1-202ENST00000420870 581 ntTSL 4 BASIC5.44□□□□□ -1.54
VPS4BO75351 SLC9B1P4-201ENST00000421957 1288 ntBASIC5.44□□□□□ -1.54
VPS4BO75351 TNPO1P1-201ENST00000423641 1138 ntBASIC5.44□□□□□ -1.54
VPS4BO75351 AC073283.2-202ENST00000426892 591 ntTSL 4 BASIC5.44□□□□□ -1.54
VPS4BO75351 AC092920.1-201ENST00000428516 678 ntTSL 5 BASIC5.44□□□□□ -1.54
VPS4BO75351 RPL7P56-201ENST00000429441 717 ntBASIC5.44□□□□□ -1.54
VPS4BO75351 MOB1AP1-201ENST00000430903 535 ntBASIC5.44□□□□□ -1.54
VPS4BO75351 CFL1P1-202ENST00000432948 411 ntBASIC5.44□□□□□ -1.54
VPS4BO75351 AL121957.1-202ENST00000437040 329 ntTSL 3 BASIC5.44□□□□□ -1.54
VPS4BO75351 COX7BP2-201ENST00000437976 242 ntBASIC5.44□□□□□ -1.54
VPS4BO75351 FOCAD-AS1-201ENST00000439876 359 ntTSL 2 BASIC5.44□□□□□ -1.54
VPS4BO75351 GSAP-208ENST00000441833 737 ntTSL 1 (best) BASIC5.44□□□□□ -1.54
VPS4BO75351 MYO9A-203ENST00000444904 7749 ntAPPRIS P2 TSL 5 BASIC5.44□□□□□ -1.54
VPS4BO75351 AL596266.1-201ENST00000448132 400 ntBASIC5.44□□□□□ -1.54
VPS4BO75351 AP000797.2-201ENST00000475768 606 ntBASIC5.44□□□□□ -1.54
VPS4BO75351 AC093270.2-201ENST00000486157 792 ntBASIC5.44□□□□□ -1.54
VPS4BO75351 LINC00971-203ENST00000491849 452 ntTSL 3 BASIC5.44□□□□□ -1.54
VPS4BO75351 NENFP3-201ENST00000503735 313 ntBASIC5.44□□□□□ -1.54
VPS4BO75351 CD164-207ENST00000504373 1402 ntTSL 1 (best) BASIC5.44□□□□□ -1.54
VPS4BO75351 GTF2H2B-203ENST00000508065 1432 ntBASIC5.44□□□□□ -1.54
VPS4BO75351 AC110275.1-201ENST00000534420 623 ntAPPRIS P1 TSL 4 BASIC5.44□□□□□ -1.54
VPS4BO75351 RAP1B-224ENST00000541216 701 ntTSL 1 (best) BASIC5.44□□□□□ -1.54
VPS4BO75351 AC006530.1-201ENST00000555980 571 ntBASIC5.44□□□□□ -1.54
VPS4BO75351 AC009019.1-202ENST00000568410 405 ntTSL 3 BASIC5.44□□□□□ -1.54
VPS4BO75351 AC012146.1-201ENST00000571138 462 ntTSL 2 BASIC5.44□□□□□ -1.54
VPS4BO75351 AC021749.1-201ENST00000604322 607 ntBASIC5.44□□□□□ -1.54
VPS4BO75351 VN1R74P-201ENST00000613259 503 ntBASIC5.44□□□□□ -1.54
VPS4BO75351 AL356274.1-201ENST00000617064 410 ntBASIC5.44□□□□□ -1.54
VPS4BO75351 AC243654.3-201ENST00000617427 735 ntTSL 5 BASIC5.44□□□□□ -1.54
VPS4BO75351 RAB18-209ENST00000621805 4894 ntTSL 1 (best) BASIC5.44□□□□□ -1.54
VPS4BO75351 AC024595.1-201ENST00000623088 387 ntBASIC5.44□□□□□ -1.54
VPS4BO75351 DUXB-201ENST00000633875 1079 ntAPPRIS P1 TSL 3 BASIC5.44□□□□□ -1.54
VPS4BO75351 LGI1-202ENST00000371418 2381 ntAPPRIS P1 TSL 1 (best) BASIC5.44□□□□□ -1.54
VPS4BO75351 YES1P1-201ENST00000418510 1628 ntBASIC5.44□□□□□ -1.54
VPS4BO75351 AC006042.3-201ENST00000454684 1469 ntBASIC5.44□□□□□ -1.54
VPS4BO75351 AIG1-208ENST00000494282 3393 ntTSL 1 (best) BASIC5.44□□□□□ -1.54
VPS4BO75351 SLMAP-208ENST00000449503 4027 ntTSL 1 (best) BASIC5.44□□□□□ -1.54
VPS4BO75351 RABL3-201ENST00000273375 3883 ntAPPRIS P1 TSL 1 (best) BASIC5.44□□□□□ -1.54
VPS4BO75351 RABGAP1L-205ENST00000367687 1849 ntTSL 2 BASIC5.44□□□□□ -1.54
VPS4BO75351 ZNF492-201ENST00000456783 4245 ntAPPRIS P1 TSL 1 (best) BASIC5.43□□□□□ -1.54
VPS4BO75351 FCRL2-203ENST00000368181 1669 ntTSL 1 (best) BASIC5.43□□□□□ -1.54
VPS4BO75351 PATE1-201ENST00000305738 1527 ntAPPRIS P2 TSL 1 (best) BASIC5.43□□□□□ -1.54
VPS4BO75351 CACNB4-221ENST00000636130 7748 ntTSL 5 BASIC5.43□□□□□ -1.54
VPS4BO75351 MAPRE2-202ENST00000413393 4173 ntAPPRIS ALT1 TSL 5 BASIC5.43□□□□□ -1.54
VPS4BO75351 NBPF10-201ENST00000583866 13042 ntAPPRIS P1 TSL 5 BASIC5.43□□□□□ -1.54
VPS4BO75351 TBCK-205ENST00000432496 3362 ntAPPRIS P1 TSL 2 BASIC5.43□□□□□ -1.54
VPS4BO75351 AC093849.1-201ENST00000563631 2209 ntBASIC5.43□□□□□ -1.54
VPS4BO75351 BBOX1-202ENST00000525090 1596 ntAPPRIS P1 TSL 1 (best) BASIC5.43□□□□□ -1.54
VPS4BO75351 EIF3M-208ENST00000531120 5051 ntAPPRIS P1 TSL 1 (best) BASIC5.43□□□□□ -1.54
VPS4BO75351 RANBP3L-202ENST00000502994 2278 ntAPPRIS ALT1 TSL 2 BASIC5.43□□□□□ -1.54
VPS4BO75351 GABRG3-201ENST00000333743 1235 ntTSL 5 BASIC5.43□□□□□ -1.54
VPS4BO75351 OR5W2-201ENST00000344514 933 ntAPPRIS P1 BASIC5.43□□□□□ -1.54
VPS4BO75351 KLRF1-202ENST00000354855 838 ntTSL 1 (best) BASIC5.43□□□□□ -1.54
VPS4BO75351 RN7SKP115-201ENST00000363177 317 ntBASIC5.43□□□□□ -1.54
VPS4BO75351 RN7SKP124-201ENST00000364730 341 ntBASIC5.43□□□□□ -1.54
VPS4BO75351 SSX1-201ENST00000376919 1298 ntAPPRIS P1 TSL 1 (best) BASIC5.43□□□□□ -1.54
VPS4BO75351 PLIN2-202ENST00000380464 655 ntTSL 2 BASIC5.43□□□□□ -1.54
VPS4BO75351 MIR585-201ENST00000384887 94 ntBASIC5.43□□□□□ -1.54
VPS4BO75351 CLEC7A-206ENST00000396484 1000 ntTSL 1 (best) BASIC5.43□□□□□ -1.54
Retrieved 100 of 98,524 protein–RNA pairs in 77.4 ms