Protein–RNA interactions for Protein: Q9UBP4

DKK3, Dickkopf-related protein 3, humanhuman

Predictions only

Length 350 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DKK3Q9UBP4 SOX2-OT-224ENST00000595313 716 ntTSL 5 BASIC5.52□□□□□ -1.53
DKK3Q9UBP4 AL161896.1-201ENST00000597248 508 ntTSL 4 BASIC5.52□□□□□ -1.53
DKK3Q9UBP4 AL139344.1-201ENST00000605228 195 ntBASIC5.52□□□□□ -1.53
DKK3Q9UBP4 AC015712.7-201ENST00000615211 635 ntBASIC5.52□□□□□ -1.53
DKK3Q9UBP4 AC123767.1-202ENST00000620407 817 ntBASIC5.52□□□□□ -1.53
DKK3Q9UBP4 GPR34-203ENST00000620846 1282 ntTSL 1 (best) BASIC5.52□□□□□ -1.53
DKK3Q9UBP4 SATB1-AS1-263ENST00000630022 622 ntTSL 5 BASIC5.52□□□□□ -1.53
DKK3Q9UBP4 MIR3974-201ENST00000637126 96 ntBASIC5.52□□□□□ -1.53
DKK3Q9UBP4 SKP1-202ENST00000353411 9474 ntAPPRIS P4 TSL 1 (best) BASIC5.52□□□□□ -1.53
DKK3Q9UBP4 ADGRF5-201ENST00000265417 5668 ntAPPRIS P1 TSL 1 (best) BASIC5.52□□□□□ -1.53
DKK3Q9UBP4 LTA4H-202ENST00000413268 1908 ntTSL 2 BASIC5.52□□□□□ -1.53
DKK3Q9UBP4 RAB30-212ENST00000533486 9929 ntAPPRIS P1 TSL 1 (best) BASIC5.52□□□□□ -1.53
DKK3Q9UBP4 ZNF189-201ENST00000259395 3115 ntTSL 1 (best) BASIC5.52□□□□□ -1.53
DKK3Q9UBP4 PCDH15-217ENST00000414778 9234 ntAPPRIS ALT2 TSL 5 BASIC5.52□□□□□ -1.53
DKK3Q9UBP4 AMY1C-201ENST00000370079 1632 ntAPPRIS P1 TSL 1 (best) BASIC5.52□□□□□ -1.53
DKK3Q9UBP4 RALGAPB-202ENST00000397040 8435 ntAPPRIS P3 TSL 1 (best) BASIC5.51□□□□□ -1.53
DKK3Q9UBP4 GABRA3-201ENST00000370314 3712 ntAPPRIS P1 TSL 1 (best) BASIC5.51□□□□□ -1.53
DKK3Q9UBP4 ANAPC1P1-201ENST00000426186 2145 ntBASIC5.51□□□□□ -1.53
DKK3Q9UBP4 LINC02070-201ENST00000460586 1321 ntTSL 1 (best) BASIC5.51□□□□□ -1.53
DKK3Q9UBP4 KDM4C-214ENST00000536108 3406 ntTSL 1 (best) BASIC5.51□□□□□ -1.53
DKK3Q9UBP4 AC068870.1-201ENST00000563737 2455 ntBASIC5.51□□□□□ -1.53
DKK3Q9UBP4 AP001029.2-203ENST00000589795 4910 ntBASIC5.51□□□□□ -1.53
DKK3Q9UBP4 EPHA4-202ENST00000409854 3454 ntTSL 1 (best) BASIC5.51□□□□□ -1.53
DKK3Q9UBP4 OR5H2-201ENST00000355273 945 ntBASIC5.51□□□□□ -1.53
DKK3Q9UBP4 OR5H2-202ENST00000356526 930 ntAPPRIS P1 BASIC5.51□□□□□ -1.53
DKK3Q9UBP4 RNA5SP335-201ENST00000363817 110 ntBASIC5.51□□□□□ -1.53
DKK3Q9UBP4 DEC1-201ENST00000374016 1251 ntAPPRIS P2 TSL 1 (best) BASIC5.51□□□□□ -1.53
DKK3Q9UBP4 RNU6-636P-201ENST00000384598 107 ntBASIC5.51□□□□□ -1.53
DKK3Q9UBP4 MIR585-201ENST00000384887 94 ntBASIC5.51□□□□□ -1.53
DKK3Q9UBP4 SNORA68.2-201ENST00000391263 128 ntBASIC5.51□□□□□ -1.53
DKK3Q9UBP4 CFHR3-203ENST00000391985 1043 ntTSL 2 BASIC5.51□□□□□ -1.53
DKK3Q9UBP4 AL136310.1-201ENST00000404926 654 ntBASIC5.51□□□□□ -1.53
DKK3Q9UBP4 AF015720.1-201ENST00000412240 349 ntTSL 3 BASIC5.51□□□□□ -1.53
DKK3Q9UBP4 AC009518.2-201ENST00000418056 731 ntBASIC5.51□□□□□ -1.53
DKK3Q9UBP4 RPS3AP37-201ENST00000419176 745 ntBASIC5.51□□□□□ -1.53
DKK3Q9UBP4 MFSD13B-201ENST00000420133 1290 ntBASIC5.51□□□□□ -1.53
DKK3Q9UBP4 AL590609.2-201ENST00000421430 368 ntBASIC5.51□□□□□ -1.53
DKK3Q9UBP4 OR5M12P-201ENST00000423388 929 ntBASIC5.51□□□□□ -1.53
DKK3Q9UBP4 AL136231.1-201ENST00000429407 730 ntBASIC5.51□□□□□ -1.53
DKK3Q9UBP4 AL035416.1-201ENST00000443012 767 ntTSL 2 BASIC5.51□□□□□ -1.53
DKK3Q9UBP4 AC069540.1-201ENST00000446320 988 ntBASIC5.51□□□□□ -1.53
DKK3Q9UBP4 AL157827.1-201ENST00000447622 132 ntBASIC5.51□□□□□ -1.53
DKK3Q9UBP4 OR2AO1P-201ENST00000476497 403 ntBASIC5.51□□□□□ -1.53
DKK3Q9UBP4 LINC02224-201ENST00000505706 584 ntTSL 4 BASIC5.51□□□□□ -1.53
DKK3Q9UBP4 GLUD1P3-202ENST00000508551 200 ntBASIC5.51□□□□□ -1.53
DKK3Q9UBP4 MTND6P2-201ENST00000512226 524 ntBASIC5.51□□□□□ -1.53
DKK3Q9UBP4 HDAC2-AS2-209ENST00000519270 1244 ntTSL 4 BASIC5.51□□□□□ -1.53
DKK3Q9UBP4 AP003557.1-202ENST00000528978 562 ntTSL 4 BASIC5.51□□□□□ -1.53
DKK3Q9UBP4 EQTN-204ENST00000537675 879 ntAPPRIS ALT2 TSL 1 (best) BASIC5.51□□□□□ -1.53
DKK3Q9UBP4 SULT1C2P2-201ENST00000562517 294 ntBASIC5.51□□□□□ -1.53
DKK3Q9UBP4 MIR4789-201ENST00000577469 82 ntBASIC5.51□□□□□ -1.53
DKK3Q9UBP4 MIR4472-2-201ENST00000582069 67 ntBASIC5.51□□□□□ -1.53
DKK3Q9UBP4 XIST-210ENST00000602863 775 ntTSL 3 BASIC5.51□□□□□ -1.53
DKK3Q9UBP4 AP002906.1-201ENST00000603405 233 ntBASIC5.51□□□□□ -1.53
DKK3Q9UBP4 AL022161.1-201ENST00000604390 213 ntBASIC5.51□□□□□ -1.53
DKK3Q9UBP4 AC245008.1-201ENST00000608123 476 ntBASIC5.51□□□□□ -1.53
DKK3Q9UBP4 PXT1-202ENST00000619547 619 ntAPPRIS ALT2 TSL 1 (best) BASIC5.51□□□□□ -1.53
DKK3Q9UBP4 ST6GALNAC3-203ENST00000621530 617 ntTSL 5 BASIC5.51□□□□□ -1.53
DKK3Q9UBP4 AC017037.3-201ENST00000625016 472 ntBASIC5.51□□□□□ -1.53
DKK3Q9UBP4 LGI1-209ENST00000627699 664 ntTSL 3 BASIC5.51□□□□□ -1.53
DKK3Q9UBP4 NEK3-211ENST00000629912 141 ntTSL 5 BASIC5.51□□□□□ -1.53
DKK3Q9UBP4 DUXB-201ENST00000633875 1079 ntAPPRIS P1 TSL 3 BASIC5.51□□□□□ -1.53
DKK3Q9UBP4 AC120338.1-201ENST00000625074 1541 ntBASIC5.51□□□□□ -1.53
DKK3Q9UBP4 RANBP3L-201ENST00000296604 3104 ntAPPRIS P3 TSL 1 (best) BASIC5.51□□□□□ -1.53
DKK3Q9UBP4 CPXCR1-203ENST00000614120 1485 ntAPPRIS P1 TSL 3 BASIC5.51□□□□□ -1.53
DKK3Q9UBP4 PDS5B-201ENST00000315596 7497 ntAPPRIS P1 TSL 1 (best) BASIC5.51□□□□□ -1.53
DKK3Q9UBP4 KLF12-201ENST00000377669 10637 ntAPPRIS P1 TSL 1 (best) BASIC5.5□□□□□ -1.53
DKK3Q9UBP4 AC087473.1-201ENST00000561320 2471 ntTSL 1 (best) BASIC5.5□□□□□ -1.53
DKK3Q9UBP4 ZNF431-201ENST00000311048 13894 ntAPPRIS P1 TSL 1 (best) BASIC5.5□□□□□ -1.53
DKK3Q9UBP4 CYP4Z2P-201ENST00000423332 1512 ntBASIC5.5□□□□□ -1.53
DKK3Q9UBP4 RAPH1-207ENST00000423104 1860 ntAPPRIS ALT2 TSL 5 BASIC5.5□□□□□ -1.53
DKK3Q9UBP4 RAPH1-209ENST00000439222 1854 ntAPPRIS ALT2 TSL 5 BASIC5.5□□□□□ -1.53
DKK3Q9UBP4 AC007750.1-202ENST00000418968 4098 ntTSL 5 BASIC5.5□□□□□ -1.53
DKK3Q9UBP4 OR6X1-201ENST00000327930 1058 ntAPPRIS P1 BASIC5.5□□□□□ -1.53
DKK3Q9UBP4 RNU4-92P-201ENST00000363783 136 ntBASIC5.5□□□□□ -1.53
DKK3Q9UBP4 RN7SKP224-201ENST00000364140 325 ntBASIC5.5□□□□□ -1.53
DKK3Q9UBP4 SPATA42-201ENST00000369989 535 ntTSL 1 (best) BASIC5.5□□□□□ -1.53
DKK3Q9UBP4 OR51B6-201ENST00000380219 939 ntAPPRIS P1 BASIC5.5□□□□□ -1.53
DKK3Q9UBP4 U6.112-201ENST00000384129 70 ntBASIC5.5□□□□□ -1.53
DKK3Q9UBP4 RNU6-932P-201ENST00000391108 106 ntBASIC5.5□□□□□ -1.53
DKK3Q9UBP4 AL138749.1-201ENST00000397864 791 ntTSL 5 BASIC5.5□□□□□ -1.53
DKK3Q9UBP4 FAM26D-203ENST00000405399 1165 ntTSL 1 (best) BASIC5.5□□□□□ -1.53
DKK3Q9UBP4 RNU6ATAC18P-201ENST00000408413 101 ntBASIC5.5□□□□□ -1.53
DKK3Q9UBP4 AL390774.1-201ENST00000411924 246 ntBASIC5.5□□□□□ -1.53
DKK3Q9UBP4 DAB1-AS1-201ENST00000416598 1262 ntTSL 1 (best) BASIC5.5□□□□□ -1.53
DKK3Q9UBP4 MTCYBP7-201ENST00000419540 1134 ntBASIC5.5□□□□□ -1.53
DKK3Q9UBP4 GNRH1-202ENST00000421054 470 ntAPPRIS P1 TSL 1 (best) BASIC5.5□□□□□ -1.53
DKK3Q9UBP4 SRSF1P1-201ENST00000424058 520 ntBASIC5.5□□□□□ -1.53
DKK3Q9UBP4 LINC01935-201ENST00000431897 437 ntTSL 3 BASIC5.5□□□□□ -1.53
DKK3Q9UBP4 MTND4P32-201ENST00000437189 1237 ntBASIC5.5□□□□□ -1.53
DKK3Q9UBP4 PTGES3P1-201ENST00000439531 483 ntBASIC5.5□□□□□ -1.53
DKK3Q9UBP4 SEPT14P24-201ENST00000447236 180 ntBASIC5.5□□□□□ -1.53
DKK3Q9UBP4 AC060834.2-201ENST00000447999 618 ntTSL 3 BASIC5.5□□□□□ -1.53
DKK3Q9UBP4 RPS23P9-201ENST00000448848 438 ntBASIC5.5□□□□□ -1.53
DKK3Q9UBP4 AC019117.1-204ENST00000451792 442 ntTSL 3 BASIC5.5□□□□□ -1.53
DKK3Q9UBP4 AL645937.3-201ENST00000453647 936 ntBASIC5.5□□□□□ -1.53
DKK3Q9UBP4 AL023581.2-201ENST00000454588 552 ntTSL 2 BASIC5.5□□□□□ -1.53
DKK3Q9UBP4 FTH1P2-201ENST00000466086 412 ntBASIC5.5□□□□□ -1.53
DKK3Q9UBP4 PSAT1P4-201ENST00000466500 526 ntBASIC5.5□□□□□ -1.53
DKK3Q9UBP4 COPS8P2-201ENST00000473228 627 ntBASIC5.5□□□□□ -1.53
Retrieved 100 of 98,524 protein–RNA pairs in 117.4 ms