Protein–RNA interactions for Protein: Q9HC56

PCDH9, Protocadherin-9, humanhuman

Predictions only

Length 1,237 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH9Q9HC56 PCAT14-202ENST00000627127 3935 ntBASIC5.05□□□□□ -1.6
PCDH9Q9HC56 EIF4EBP2-201ENST00000373218 7257 ntAPPRIS P1 TSL 1 (best) BASIC5.05□□□□□ -1.6
PCDH9Q9HC56 IQCH-202ENST00000358767 3062 ntTSL 5 BASIC5.05□□□□□ -1.6
PCDH9Q9HC56 AL359922.3-201ENST00000624779 1670 ntBASIC5.05□□□□□ -1.6
PCDH9Q9HC56 RLIM-201ENST00000332687 8317 ntAPPRIS P1 TSL 1 (best) BASIC5.05□□□□□ -1.6
PCDH9Q9HC56 DOPEY1-202ENST00000349129 8210 ntAPPRIS P3 TSL 1 (best) BASIC5.05□□□□□ -1.6
PCDH9Q9HC56 OBSCN-214ENST00000636875 23907 ntTSL 5 BASIC5.05□□□□□ -1.6
PCDH9Q9HC56 LIMA1-214ENST00000552783 3612 ntAPPRIS ALT2 TSL 1 (best) BASIC5.05□□□□□ -1.6
PCDH9Q9HC56 RNA5SP428-201ENST00000365129 132 ntBASIC5.05□□□□□ -1.6
PCDH9Q9HC56 AL672167.2-201ENST00000377164 879 ntBASIC5.05□□□□□ -1.6
PCDH9Q9HC56 MIR105-2-201ENST00000385083 81 ntBASIC5.05□□□□□ -1.6
PCDH9Q9HC56 OR6C4-201ENST00000394256 1046 ntAPPRIS P1 BASIC5.05□□□□□ -1.6
PCDH9Q9HC56 Z97832.1-201ENST00000402490 328 ntBASIC5.05□□□□□ -1.6
PCDH9Q9HC56 AL592291.1-201ENST00000403830 352 ntBASIC5.05□□□□□ -1.6
PCDH9Q9HC56 RN7SKP125-201ENST00000410481 302 ntBASIC5.05□□□□□ -1.6
PCDH9Q9HC56 RNU4-27P-201ENST00000410889 139 ntBASIC5.05□□□□□ -1.6
PCDH9Q9HC56 ARSD-AS1-201ENST00000414053 816 ntTSL 2 BASIC5.05□□□□□ -1.6
PCDH9Q9HC56 AF240627.1-201ENST00000416002 879 ntTSL 3 BASIC5.05□□□□□ -1.6
PCDH9Q9HC56 MTCYBP32-201ENST00000427945 1084 ntBASIC5.05□□□□□ -1.6
PCDH9Q9HC56 FABP7P2-201ENST00000429946 379 ntBASIC5.05□□□□□ -1.6
PCDH9Q9HC56 CEACAMP7-201ENST00000444105 496 ntBASIC5.05□□□□□ -1.6
PCDH9Q9HC56 AC107015.1-201ENST00000466902 747 ntBASIC5.05□□□□□ -1.6
PCDH9Q9HC56 CREM-228ENST00000473940 1182 ntTSL 1 (best) BASIC5.05□□□□□ -1.6
PCDH9Q9HC56 RPL7AP6-201ENST00000477943 801 ntBASIC5.05□□□□□ -1.6
PCDH9Q9HC56 AC068756.1-201ENST00000482003 403 ntTSL 2 BASIC5.05□□□□□ -1.6
PCDH9Q9HC56 AC008410.1-201ENST00000483777 339 ntBASIC5.05□□□□□ -1.6
PCDH9Q9HC56 SOX2-OT-216ENST00000497122 578 ntTSL 4 BASIC5.05□□□□□ -1.6
PCDH9Q9HC56 MTCO3P27-201ENST00000514397 196 ntBASIC5.05□□□□□ -1.6
PCDH9Q9HC56 RNU6ATAC24P-201ENST00000516811 135 ntBASIC5.05□□□□□ -1.6
PCDH9Q9HC56 KBTBD3-204ENST00000531482 874 ntTSL 3 BASIC5.05□□□□□ -1.6
PCDH9Q9HC56 AC090023.2-201ENST00000540875 545 ntTSL 3 BASIC5.05□□□□□ -1.6
PCDH9Q9HC56 AC138360.1-201ENST00000552332 386 ntTSL 3 BASIC5.05□□□□□ -1.6
PCDH9Q9HC56 AC016180.1-201ENST00000567945 403 ntBASIC5.05□□□□□ -1.6
PCDH9Q9HC56 AC009303.2-201ENST00000585381 1083 ntTSL 3 BASIC5.05□□□□□ -1.6
PCDH9Q9HC56 RNF138P2-201ENST00000603490 592 ntBASIC5.05□□□□□ -1.6
PCDH9Q9HC56 IGKV2OR2-2-201ENST00000605025 300 ntBASIC5.05□□□□□ -1.6
PCDH9Q9HC56 AL445222.1-201ENST00000607259 628 ntBASIC5.05□□□□□ -1.6
PCDH9Q9HC56 MIR6719-201ENST00000622428 87 ntBASIC5.05□□□□□ -1.6
PCDH9Q9HC56 AC090617.9-201ENST00000623751 147 ntBASIC5.05□□□□□ -1.6
PCDH9Q9HC56 AP003476.1-201ENST00000623984 516 ntBASIC5.05□□□□□ -1.6
PCDH9Q9HC56 AC009452.1-201ENST00000640823 606 ntBASIC5.05□□□□□ -1.6
PCDH9Q9HC56 PIK3C3-201ENST00000262039 9443 ntAPPRIS P1 TSL 1 (best) BASIC5.05□□□□□ -1.6
PCDH9Q9HC56 AC115220.1-201ENST00000330020 1453 ntAPPRIS P1 TSL 3 BASIC5.05□□□□□ -1.6
PCDH9Q9HC56 RGS5-212ENST00000618415 5812 ntTSL 4 BASIC5.05□□□□□ -1.6
PCDH9Q9HC56 DCN-201ENST00000052754 7156 ntAPPRIS P1 TSL 1 (best) BASIC5.04□□□□□ -1.6
PCDH9Q9HC56 IL13RA2-201ENST00000243213 1371 ntAPPRIS P1 TSL 1 (best) BASIC5.04□□□□□ -1.6
PCDH9Q9HC56 HYKK-206ENST00000569878 4097 ntAPPRIS P1 TSL 5 BASIC5.04□□□□□ -1.6
PCDH9Q9HC56 PTPN13-201ENST00000316707 7546 ntAPPRIS ALT2 TSL 1 (best) BASIC5.04□□□□□ -1.6
PCDH9Q9HC56 LINC00507-201ENST00000540882 1935 ntTSL 5 BASIC5.04□□□□□ -1.6
PCDH9Q9HC56 MIR122-201ENST00000385044 85 ntBASIC5.04□□□□□ -1.6
PCDH9Q9HC56 ZNF365-203ENST00000395249 433 ntTSL 1 (best) BASIC5.04□□□□□ -1.6
PCDH9Q9HC56 CHMP1B2P-201ENST00000399581 597 ntBASIC5.04□□□□□ -1.6
PCDH9Q9HC56 BMS1P13-201ENST00000417301 885 ntBASIC5.04□□□□□ -1.6
PCDH9Q9HC56 HSPE1P16-201ENST00000426640 348 ntBASIC5.04□□□□□ -1.6
PCDH9Q9HC56 LINC00458-202ENST00000427299 1030 ntTSL 1 (best) BASIC5.04□□□□□ -1.6
PCDH9Q9HC56 TPTE2P1-203ENST00000434100 514 ntTSL 3 BASIC5.04□□□□□ -1.6
PCDH9Q9HC56 KCNIP1-205ENST00000434108 726 ntTSL 1 (best) BASIC5.04□□□□□ -1.6
PCDH9Q9HC56 AL137845.2-201ENST00000444292 988 ntBASIC5.04□□□□□ -1.6
PCDH9Q9HC56 KCNQ5-IT1-201ENST00000445310 563 ntTSL 2 BASIC5.04□□□□□ -1.6
PCDH9Q9HC56 CASP12-207ENST00000447913 819 ntTSL 1 (best) BASIC5.04□□□□□ -1.6
PCDH9Q9HC56 CASP12-208ENST00000448103 1071 ntTSL 1 (best) BASIC5.04□□□□□ -1.6
PCDH9Q9HC56 RN7SL515P-201ENST00000463999 297 ntBASIC5.04□□□□□ -1.6
PCDH9Q9HC56 AC055758.1-201ENST00000494509 569 ntTSL 3 BASIC5.04□□□□□ -1.6
PCDH9Q9HC56 RN7SL808P-201ENST00000496066 299 ntBASIC5.04□□□□□ -1.6
PCDH9Q9HC56 AC124242.1-202ENST00000499554 1052 ntTSL 3 BASIC5.04□□□□□ -1.6
PCDH9Q9HC56 AP003355.1-201ENST00000518956 587 ntBASIC5.04□□□□□ -1.6
PCDH9Q9HC56 AC008641.1-201ENST00000523781 248 ntTSL 3 BASIC5.04□□□□□ -1.6
PCDH9Q9HC56 AP003400.1-201ENST00000528319 231 ntTSL 5 BASIC5.04□□□□□ -1.6
PCDH9Q9HC56 AP001970.1-201ENST00000531681 701 ntTSL 3 BASIC5.04□□□□□ -1.6
PCDH9Q9HC56 AP001775.2-201ENST00000531710 334 ntTSL 2 BASIC5.04□□□□□ -1.6
PCDH9Q9HC56 OR8X1P-201ENST00000534542 869 ntBASIC5.04□□□□□ -1.6
PCDH9Q9HC56 AC131274.1-201ENST00000582507 254 ntTSL 3 BASIC5.04□□□□□ -1.6
PCDH9Q9HC56 AC007527.2-201ENST00000621825 546 ntTSL 5 BASIC5.04□□□□□ -1.6
PCDH9Q9HC56 AC019206.1-201ENST00000621938 425 ntBASIC5.04□□□□□ -1.6
PCDH9Q9HC56 AC068880.4-201ENST00000623082 495 ntBASIC5.04□□□□□ -1.6
PCDH9Q9HC56 OSER1-AS1-205ENST00000623343 827 ntTSL 5 BASIC5.04□□□□□ -1.6
PCDH9Q9HC56 AP003485.1-201ENST00000625093 753 ntBASIC5.04□□□□□ -1.6
PCDH9Q9HC56 AC004808.1-201ENST00000627671 721 ntBASIC5.04□□□□□ -1.6
PCDH9Q9HC56 FRG1DP-201ENST00000635586 771 ntBASIC5.04□□□□□ -1.6
PCDH9Q9HC56 AC016705.1-201ENST00000548231 1891 ntTSL 5 BASIC5.04□□□□□ -1.6
PCDH9Q9HC56 ZBTB38-220ENST00000514251 7683 ntAPPRIS P1 TSL 2 BASIC5.04□□□□□ -1.6
PCDH9Q9HC56 MACF1-203ENST00000361689 17538 ntTSL 5 BASIC5.04□□□□□ -1.6
PCDH9Q9HC56 CD86-203ENST00000393627 1405 ntAPPRIS ALT2 TSL 1 (best) BASIC5.04□□□□□ -1.6
PCDH9Q9HC56 MTCO1P4-201ENST00000520516 1409 ntBASIC5.04□□□□□ -1.6
PCDH9Q9HC56 MGP-203ENST00000539261 1405 ntAPPRIS P1 TSL 1 (best) BASIC5.04□□□□□ -1.6
PCDH9Q9HC56 PTPRO-203ENST00000442921 3030 ntAPPRIS ALT2 TSL 1 (best) BASIC5.04□□□□□ -1.6
PCDH9Q9HC56 CMYA5-201ENST00000446378 12847 ntAPPRIS P1 TSL 5 BASIC5.04□□□□□ -1.6
PCDH9Q9HC56 HGF-201ENST00000222390 5989 ntAPPRIS P3 TSL 1 (best) BASIC5.04□□□□□ -1.6
PCDH9Q9HC56 CYP7A1-201ENST00000301645 2950 ntAPPRIS P1 TSL 1 (best) BASIC5.04□□□□□ -1.6
PCDH9Q9HC56 AC024337.2-201ENST00000616608 2797 ntTSL 5 BASIC5.04□□□□□ -1.6
PCDH9Q9HC56 CSNK1G3-210ENST00000521364 2580 ntAPPRIS ALT2 TSL 2 BASIC5.04□□□□□ -1.6
PCDH9Q9HC56 ROBO2-213ENST00000614793 7662 ntTSL 5 BASIC5.04□□□□□ -1.6
PCDH9Q9HC56 NAIP-210ENST00000523981 4543 ntTSL 1 (best) BASIC5.04□□□□□ -1.6
PCDH9Q9HC56 CSPP1-203ENST00000519668 3715 ntAPPRIS ALT2 TSL 1 (best) BASIC5.03□□□□□ -1.6
PCDH9Q9HC56 FAM19A2-215ENST00000551619 2718 ntAPPRIS P1 TSL 2 BASIC5.03□□□□□ -1.6
PCDH9Q9HC56 MAPK10-208ENST00000395169 4049 ntTSL 1 (best) BASIC5.03□□□□□ -1.6
PCDH9Q9HC56 IPO11-203ENST00000409534 1725 ntTSL 2 BASIC5.03□□□□□ -1.6
PCDH9Q9HC56 CTAGE5-208ENST00000553352 3441 ntTSL 1 (best) BASIC5.03□□□□□ -1.6
PCDH9Q9HC56 SLC24A2-202ENST00000341998 10749 ntAPPRIS P1 TSL 1 (best) BASIC5.03□□□□□ -1.6
PCDH9Q9HC56 SMC2-AS1-201ENST00000603487 7020 ntTSL 2 BASIC5.03□□□□□ -1.6
Retrieved 100 of 98,524 protein–RNA pairs in 108.3 ms