Protein–RNA interactions for Protein: Q9BYB0

SHANK3, SH3 and multiple ankyrin repeat domains protein 3, humanhuman

Predictions only

Length 1,731 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHANK3Q9BYB0 AC011477.2-201ENST00000590697 921 ntTSL 2 BASIC5.68□□□□□ -1.5
SHANK3Q9BYB0 AC079587.1-201ENST00000603846 277 ntBASIC5.68□□□□□ -1.5
SHANK3Q9BYB0 SNORA51-201ENST00000606420 132 ntBASIC5.68□□□□□ -1.5
SHANK3Q9BYB0 AC007342.8-201ENST00000623278 678 ntBASIC5.68□□□□□ -1.5
SHANK3Q9BYB0 AC020978.9-201ENST00000624380 1141 ntBASIC5.68□□□□□ -1.5
SHANK3Q9BYB0 AC021355.1-202ENST00000519996 1633 ntTSL 2 BASIC5.68□□□□□ -1.5
SHANK3Q9BYB0 C15orf41-212ENST00000567389 2618 ntTSL 1 (best) BASIC5.68□□□□□ -1.5
SHANK3Q9BYB0 AL133243.3-201ENST00000617415 3004 ntBASIC5.68□□□□□ -1.5
SHANK3Q9BYB0 USP46-201ENST00000441222 7954 ntAPPRIS P1 TSL 1 (best) BASIC5.68□□□□□ -1.5
SHANK3Q9BYB0 AC109446.4-201ENST00000623235 2755 ntBASIC5.68□□□□□ -1.5
SHANK3Q9BYB0 UGT2A1-203ENST00000503640 2595 ntAPPRIS P1 TSL 1 (best) BASIC5.68□□□□□ -1.5
SHANK3Q9BYB0 SYTL2-213ENST00000525702 2727 ntTSL 1 (best) BASIC5.68□□□□□ -1.5
SHANK3Q9BYB0 AC126323.6-202ENST00000568092 3511 ntBASIC5.68□□□□□ -1.5
SHANK3Q9BYB0 ZNF285-204ENST00000591679 2388 ntAPPRIS ALT2 TSL 4 BASIC5.68□□□□□ -1.5
SHANK3Q9BYB0 CNOT4-205ENST00000423368 3297 ntAPPRIS ALT1 TSL 1 (best) BASIC5.68□□□□□ -1.5
SHANK3Q9BYB0 CLMN-201ENST00000298912 12747 ntAPPRIS P1 TSL 1 (best) BASIC5.68□□□□□ -1.5
SHANK3Q9BYB0 VPS13B-202ENST00000357162 14019 ntAPPRIS ALT1 TSL 1 (best) BASIC5.68□□□□□ -1.5
SHANK3Q9BYB0 EMSY-205ENST00000524767 4116 ntTSL 1 (best) BASIC5.68□□□□□ -1.5
SHANK3Q9BYB0 RNA5SP307-201ENST00000362863 116 ntBASIC5.68□□□□□ -1.5
SHANK3Q9BYB0 MT-RNR1-201ENST00000389680 954 ntBASIC5.68□□□□□ -1.5
SHANK3Q9BYB0 ARAFP1-201ENST00000422172 605 ntBASIC5.68□□□□□ -1.5
SHANK3Q9BYB0 LINC01492-202ENST00000425157 659 ntTSL 5 BASIC5.68□□□□□ -1.5
SHANK3Q9BYB0 MRPL50P1-201ENST00000431951 384 ntBASIC5.68□□□□□ -1.5
SHANK3Q9BYB0 AC026427.2-201ENST00000506228 536 ntBASIC5.68□□□□□ -1.5
SHANK3Q9BYB0 AC097478.1-202ENST00000508021 567 ntTSL 4 BASIC5.68□□□□□ -1.5
SHANK3Q9BYB0 AC093331.2-201ENST00000520459 677 ntTSL 3 BASIC5.68□□□□□ -1.5
SHANK3Q9BYB0 AC037471.2-201ENST00000564941 598 ntBASIC5.68□□□□□ -1.5
SHANK3Q9BYB0 AC053481.4-201ENST00000583164 216 ntBASIC5.68□□□□□ -1.5
SHANK3Q9BYB0 MIR4660-201ENST00000583549 74 ntBASIC5.68□□□□□ -1.5
SHANK3Q9BYB0 VIPR1-AS1-223ENST00000627073 451 ntTSL 5 BASIC5.68□□□□□ -1.5
SHANK3Q9BYB0 AL355852.1-201ENST00000454081 1771 ntBASIC5.68□□□□□ -1.5
SHANK3Q9BYB0 ADGRG2-205ENST00000357991 4661 ntAPPRIS P3 TSL 1 (best) BASIC5.67□□□□□ -1.5
SHANK3Q9BYB0 R3HCC1L-205ENST00000612478 3337 ntTSL 5 BASIC5.67□□□□□ -1.5
SHANK3Q9BYB0 CDR1-201ENST00000370532 2467 ntAPPRIS P1 BASIC5.67□□□□□ -1.5
SHANK3Q9BYB0 PTBP3-202ENST00000334318 7990 ntAPPRIS ALT1 TSL 1 (best) BASIC5.67□□□□□ -1.5
SHANK3Q9BYB0 RFESD-202ENST00000380005 2587 ntTSL 2 BASIC5.67□□□□□ -1.5
SHANK3Q9BYB0 PSMC6-218ENST00000606149 1560 ntAPPRIS ALT1 TSL 1 (best) BASIC5.67□□□□□ -1.5
SHANK3Q9BYB0 TEAD1-203ENST00000526600 8477 ntTSL 1 (best) BASIC5.67□□□□□ -1.5
SHANK3Q9BYB0 ATF7IP-201ENST00000261168 8878 ntAPPRIS P3 TSL 5 BASIC5.67□□□□□ -1.5
SHANK3Q9BYB0 GALNT5-201ENST00000259056 6171 ntAPPRIS P1 TSL 1 (best) BASIC5.67□□□□□ -1.5
SHANK3Q9BYB0 PRR14L-201ENST00000327423 10826 ntAPPRIS P2 TSL 5 BASIC5.67□□□□□ -1.5
SHANK3Q9BYB0 AL035696.2-201ENST00000407941 709 ntBASIC5.67□□□□□ -1.5
SHANK3Q9BYB0 AC012594.1-271ENST00000438635 736 ntTSL 3 BASIC5.67□□□□□ -1.5
SHANK3Q9BYB0 TCEA1P3-201ENST00000443005 880 ntBASIC5.67□□□□□ -1.5
SHANK3Q9BYB0 AL500522.2-201ENST00000448562 343 ntBASIC5.67□□□□□ -1.5
SHANK3Q9BYB0 AC104164.2-201ENST00000496953 495 ntBASIC5.67□□□□□ -1.5
SHANK3Q9BYB0 AC093801.1-201ENST00000504017 307 ntTSL 2 BASIC5.67□□□□□ -1.5
SHANK3Q9BYB0 LINC02146-201ENST00000504244 509 ntTSL 3 BASIC5.67□□□□□ -1.5
SHANK3Q9BYB0 AC099522.1-202ENST00000514718 367 ntBASIC5.67□□□□□ -1.5
SHANK3Q9BYB0 CASP1-216ENST00000534497 825 ntTSL 5 BASIC5.67□□□□□ -1.5
SHANK3Q9BYB0 G2E3-AS1-201ENST00000548631 579 ntTSL 3 BASIC5.67□□□□□ -1.5
SHANK3Q9BYB0 TTN-AS1-245ENST00000592182 749 ntTSL 5 BASIC5.67□□□□□ -1.5
SHANK3Q9BYB0 PDZPH1P-202ENST00000602846 722 ntTSL 3 BASIC5.67□□□□□ -1.5
SHANK3Q9BYB0 RASSF8-215ENST00000611440 852 ntTSL 5 BASIC5.67□□□□□ -1.5
SHANK3Q9BYB0 LINC01358-205ENST00000625548 874 ntTSL 5 BASIC5.67□□□□□ -1.5
SHANK3Q9BYB0 MGAM2-201ENST00000477922 7867 ntAPPRIS P1 TSL 5 BASIC5.67□□□□□ -1.5
SHANK3Q9BYB0 LINC00862-201ENST00000367355 1417 ntTSL 1 (best) BASIC5.67□□□□□ -1.5
SHANK3Q9BYB0 AC027228.2-201ENST00000567141 2154 ntBASIC5.67□□□□□ -1.5
SHANK3Q9BYB0 ELAVL4-206ENST00000371827 3775 ntAPPRIS ALT1 TSL 1 (best) BASIC5.67□□□□□ -1.5
SHANK3Q9BYB0 AC245407.1-201ENST00000621489 2538 ntTSL 2 BASIC5.67□□□□□ -1.5
SHANK3Q9BYB0 CCDC186-203ENST00000369287 7245 ntAPPRIS P1 TSL 1 (best) BASIC5.66□□□□□ -1.5
SHANK3Q9BYB0 P2RY13-201ENST00000325602 2764 ntAPPRIS P1 TSL 1 (best) BASIC5.66□□□□□ -1.5
SHANK3Q9BYB0 CNTN1-208ENST00000551295 5557 ntAPPRIS P1 TSL 1 (best) BASIC5.66□□□□□ -1.5
SHANK3Q9BYB0 MIR200C-201ENST00000384980 68 ntBASIC5.66□□□□□ -1.5
SHANK3Q9BYB0 UBE2Q2P12-201ENST00000414573 204 ntBASIC5.66□□□□□ -1.5
SHANK3Q9BYB0 AL035246.1-201ENST00000433554 1255 ntBASIC5.66□□□□□ -1.5
SHANK3Q9BYB0 AL162151.2-201ENST00000448875 158 ntBASIC5.66□□□□□ -1.5
SHANK3Q9BYB0 SPTSSB-202ENST00000497137 880 ntAPPRIS P1 TSL 3 BASIC5.66□□□□□ -1.5
SHANK3Q9BYB0 AC008591.1-201ENST00000503616 631 ntTSL 3 BASIC5.66□□□□□ -1.5
SHANK3Q9BYB0 OR10J4-201ENST00000504970 935 ntAPPRIS P1 BASIC5.66□□□□□ -1.5
SHANK3Q9BYB0 AC090572.2-201ENST00000520649 761 ntTSL 3 BASIC5.66□□□□□ -1.5
SHANK3Q9BYB0 OR51G1-201ENST00000623849 966 ntAPPRIS P1 BASIC5.66□□□□□ -1.5
SHANK3Q9BYB0 TTC41P-205ENST00000551270 3963 ntBASIC5.66□□□□□ -1.5
SHANK3Q9BYB0 GMFB-208ENST00000554908 6721 ntTSL 1 (best) BASIC5.66□□□□□ -1.5
SHANK3Q9BYB0 GABRG2-210ENST00000638772 7669 ntTSL 5 BASIC5.66□□□□□ -1.5
SHANK3Q9BYB0 FBXL13-208ENST00000456695 1605 ntAPPRIS P1 TSL 1 (best) BASIC5.66□□□□□ -1.5
SHANK3Q9BYB0 AQR-201ENST00000156471 9694 ntAPPRIS P1 TSL 1 (best) BASIC5.66□□□□□ -1.5
SHANK3Q9BYB0 SPATA17-201ENST00000366933 5818 ntAPPRIS P1 TSL 1 (best) BASIC5.66□□□□□ -1.5
SHANK3Q9BYB0 PPP1R9A-201ENST00000289495 3983 ntTSL 1 (best) BASIC5.66□□□□□ -1.5
SHANK3Q9BYB0 GUCY1A3-201ENST00000296518 4400 ntAPPRIS P1 TSL 1 (best) BASIC5.66□□□□□ -1.5
SHANK3Q9BYB0 MYO3B-202ENST00000408978 5529 ntAPPRIS P3 TSL 1 (best) BASIC5.66□□□□□ -1.5
SHANK3Q9BYB0 ACADSB-201ENST00000358776 5859 ntAPPRIS P1 TSL 1 (best) BASIC5.65□□□□□ -1.5
SHANK3Q9BYB0 SPRR2E-202ENST00000368751 692 ntAPPRIS P1 TSL 1 (best) BASIC5.65□□□□□ -1.5
SHANK3Q9BYB0 MRPS21P3-201ENST00000436696 262 ntBASIC5.65□□□□□ -1.5
SHANK3Q9BYB0 BMS1P22-202ENST00000440946 1160 ntTSL 1 (best) BASIC5.65□□□□□ -1.5
SHANK3Q9BYB0 AL355613.1-201ENST00000451856 480 ntTSL 2 BASIC5.65□□□□□ -1.5
SHANK3Q9BYB0 RWDD2B-207ENST00000493196 3094 ntAPPRIS P1 TSL 1 (best) BASIC5.65□□□□□ -1.5
SHANK3Q9BYB0 AC010374.1-201ENST00000503762 1237 ntBASIC5.65□□□□□ -1.5
SHANK3Q9BYB0 AC108145.1-201ENST00000503770 153 ntBASIC5.65□□□□□ -1.5
SHANK3Q9BYB0 CLCN3-204ENST00000504131 5592 ntTSL 5 BASIC5.65□□□□□ -1.5
SHANK3Q9BYB0 AC140134.1-201ENST00000511830 3544 ntBASIC5.65□□□□□ -1.5
SHANK3Q9BYB0 AC073346.2-201ENST00000624724 2058 ntBASIC5.65□□□□□ -1.5
SHANK3Q9BYB0 GPAM-202ENST00000369425 5664 ntTSL 1 (best) BASIC5.65□□□□□ -1.5
SHANK3Q9BYB0 LRRC37A-203ENST00000496930 3860 ntTSL 2 BASIC5.65□□□□□ -1.5
SHANK3Q9BYB0 AL590399.5-201ENST00000428709 3325 ntTSL 2 BASIC5.65□□□□□ -1.5
SHANK3Q9BYB0 FAN1-202ENST00000561594 2738 ntTSL 1 (best) BASIC5.65□□□□□ -1.5
SHANK3Q9BYB0 AC139769.2-201ENST00000599944 2291 ntTSL 2 BASIC5.65□□□□□ -1.5
SHANK3Q9BYB0 GTDC1-207ENST00000409298 2209 ntTSL 5 BASIC5.65□□□□□ -1.5
SHANK3Q9BYB0 CYP3A43-201ENST00000222382 1515 ntAPPRIS P4 TSL 1 (best) BASIC5.65□□□□□ -1.51
SHANK3Q9BYB0 RNMT-209ENST00000592764 4108 ntTSL 2 BASIC5.65□□□□□ -1.51
Retrieved 100 of 98,524 protein–RNA pairs in 112 ms