Protein–RNA interactions for Protein: Q8NDQ6

ZNF540, Zinc finger protein 540, humanhuman

Predictions only

Length 660 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF540Q8NDQ6 MYLK-AS2-202ENST00000515464 754 ntTSL 2 BASIC4.65□□□□□ -1.67
ZNF540Q8NDQ6 RNU2-30P-201ENST00000516209 141 ntBASIC4.65□□□□□ -1.67
ZNF540Q8NDQ6 MSC-AS1-205ENST00000519068 569 ntTSL 3 BASIC4.65□□□□□ -1.67
ZNF540Q8NDQ6 AC090809.1-201ENST00000524132 570 ntTSL 4 BASIC4.65□□□□□ -1.67
ZNF540Q8NDQ6 OR4A2P-201ENST00000527276 913 ntBASIC4.65□□□□□ -1.67
ZNF540Q8NDQ6 AL049830.4-201ENST00000555149 351 ntBASIC4.65□□□□□ -1.67
ZNF540Q8NDQ6 AC025580.2-202ENST00000558536 715 ntTSL 3 BASIC4.65□□□□□ -1.67
ZNF540Q8NDQ6 AC021483.2-201ENST00000567415 758 ntBASIC4.65□□□□□ -1.67
ZNF540Q8NDQ6 AC026979.4-201ENST00000606555 645 ntBASIC4.65□□□□□ -1.67
ZNF540Q8NDQ6 RPSAP73-201ENST00000614820 330 ntBASIC4.65□□□□□ -1.67
ZNF540Q8NDQ6 TATDN1-221ENST00000630259 915 ntTSL 5 BASIC4.65□□□□□ -1.67
ZNF540Q8NDQ6 RNMT-209ENST00000592764 4108 ntTSL 2 BASIC4.65□□□□□ -1.67
ZNF540Q8NDQ6 AC053481.2-202ENST00000582394 1500 ntBASIC4.65□□□□□ -1.67
ZNF540Q8NDQ6 STAU2-220ENST00000522695 2646 ntAPPRIS ALT1 TSL 1 (best) BASIC4.65□□□□□ -1.67
ZNF540Q8NDQ6 STAG2-204ENST00000371157 5991 ntAPPRIS P3 TSL 1 (best) BASIC4.65□□□□□ -1.67
ZNF540Q8NDQ6 SON-204ENST00000381692 2463 ntTSL 1 (best) BASIC4.65□□□□□ -1.67
ZNF540Q8NDQ6 PRUNE2-208ENST00000443509 12356 ntAPPRIS ALT2 TSL 5 BASIC4.65□□□□□ -1.67
ZNF540Q8NDQ6 IRAK4-203ENST00000448290 1381 ntTSL 5 BASIC4.65□□□□□ -1.67
ZNF540Q8NDQ6 CSPP1-203ENST00000519668 3715 ntAPPRIS ALT2 TSL 1 (best) BASIC4.64□□□□□ -1.67
ZNF540Q8NDQ6 AC015813.6-201ENST00000624409 5808 ntBASIC4.64□□□□□ -1.67
ZNF540Q8NDQ6 LINC01505-206ENST00000637046 4266 ntTSL 5 BASIC4.64□□□□□ -1.67
ZNF540Q8NDQ6 THEMIS-204ENST00000537166 3830 ntAPPRIS ALT2 TSL 2 BASIC4.64□□□□□ -1.67
ZNF540Q8NDQ6 ADGRL3-203ENST00000506700 4838 ntTSL 5 BASIC4.64□□□□□ -1.67
ZNF540Q8NDQ6 AC006042.3-201ENST00000454684 1469 ntBASIC4.64□□□□□ -1.67
ZNF540Q8NDQ6 FAM216B-201ENST00000313851 3243 ntAPPRIS P1 TSL 1 (best) BASIC4.64□□□□□ -1.67
ZNF540Q8NDQ6 BMPR2-201ENST00000374574 9683 ntTSL 2 BASIC4.64□□□□□ -1.67
ZNF540Q8NDQ6 OR8J3-203ENST00000641913 3047 ntAPPRIS P1 BASIC4.64□□□□□ -1.67
ZNF540Q8NDQ6 AC018529.3-201ENST00000624212 2254 ntBASIC4.64□□□□□ -1.67
ZNF540Q8NDQ6 IGKV7-3-201ENST00000357453 298 ntBASIC4.64□□□□□ -1.67
ZNF540Q8NDQ6 RNU6-452P-201ENST00000384406 107 ntBASIC4.64□□□□□ -1.67
ZNF540Q8NDQ6 SNORA67-201ENST00000384423 137 ntBASIC4.64□□□□□ -1.67
ZNF540Q8NDQ6 RN7SKP213-201ENST00000410746 298 ntBASIC4.64□□□□□ -1.67
ZNF540Q8NDQ6 RPL23AP27-201ENST00000415161 451 ntBASIC4.64□□□□□ -1.67
ZNF540Q8NDQ6 LINC01740-201ENST00000423842 332 ntTSL 2 BASIC4.64□□□□□ -1.67
ZNF540Q8NDQ6 AC093655.2-201ENST00000425735 631 ntBASIC4.64□□□□□ -1.67
ZNF540Q8NDQ6 AP000233.1-201ENST00000426609 291 ntTSL 3 BASIC4.64□□□□□ -1.67
ZNF540Q8NDQ6 CEACAMP1-201ENST00000434624 1035 ntBASIC4.64□□□□□ -1.67
ZNF540Q8NDQ6 AC004837.2-201ENST00000435766 731 ntTSL 3 BASIC4.64□□□□□ -1.67
ZNF540Q8NDQ6 CNOT7P2-201ENST00000441051 832 ntBASIC4.64□□□□□ -1.67
ZNF540Q8NDQ6 MTND2P8-201ENST00000450555 1025 ntBASIC4.64□□□□□ -1.67
ZNF540Q8NDQ6 AC104634.1-201ENST00000452720 462 ntBASIC4.64□□□□□ -1.67
ZNF540Q8NDQ6 CLEC2A-202ENST00000455827 916 ntAPPRIS P1 TSL 1 (best) BASIC4.64□□□□□ -1.67
ZNF540Q8NDQ6 RN7SL329P-201ENST00000467740 299 ntBASIC4.64□□□□□ -1.67
ZNF540Q8NDQ6 AC108751.2-201ENST00000469993 231 ntBASIC4.64□□□□□ -1.67
ZNF540Q8NDQ6 RPL32P9-201ENST00000487963 407 ntBASIC4.64□□□□□ -1.67
ZNF540Q8NDQ6 SUMO1P1-201ENST00000497904 306 ntBASIC4.64□□□□□ -1.67
ZNF540Q8NDQ6 TIFA-202ENST00000500655 769 ntAPPRIS P1 TSL 3 BASIC4.64□□□□□ -1.67
ZNF540Q8NDQ6 E2F5-204ENST00000517476 1094 ntTSL 2 BASIC4.64□□□□□ -1.67
ZNF540Q8NDQ6 HMGB1P40-201ENST00000525121 540 ntBASIC4.64□□□□□ -1.67
ZNF540Q8NDQ6 AP001970.1-201ENST00000531681 701 ntTSL 3 BASIC4.64□□□□□ -1.67
ZNF540Q8NDQ6 MGAT4C-206ENST00000552435 550 ntTSL 4 BASIC4.64□□□□□ -1.67
ZNF540Q8NDQ6 AC064805.2-201ENST00000582959 523 ntTSL 4 BASIC4.64□□□□□ -1.67
ZNF540Q8NDQ6 AC110792.4-201ENST00000609843 298 ntBASIC4.64□□□□□ -1.67
ZNF540Q8NDQ6 Metazoa_SRP.170-201ENST00000616060 254 ntBASIC4.64□□□□□ -1.67
ZNF540Q8NDQ6 AC006453.5-201ENST00000636451 619 ntBASIC4.64□□□□□ -1.67
ZNF540Q8NDQ6 CSRNP3-201ENST00000314499 11788 ntAPPRIS P1 TSL 5 BASIC4.64□□□□□ -1.67
ZNF540Q8NDQ6 NEK11-207ENST00000508196 1938 ntAPPRIS P3 TSL 2 BASIC4.64□□□□□ -1.67
ZNF540Q8NDQ6 LINC00507-201ENST00000540882 1935 ntTSL 5 BASIC4.64□□□□□ -1.67
ZNF540Q8NDQ6 DLGAP1-AS2-202ENST00000573177 1388 ntBASIC4.64□□□□□ -1.67
ZNF540Q8NDQ6 JCHAIN-201ENST00000254801 1438 ntAPPRIS P1 TSL 1 (best) BASIC4.63□□□□□ -1.67
ZNF540Q8NDQ6 EED-206ENST00000527888 1422 ntTSL 2 BASIC4.63□□□□□ -1.67
ZNF540Q8NDQ6 ZEB1-205ENST00000446923 6267 ntAPPRIS ALT2 TSL 5 BASIC4.63□□□□□ -1.67
ZNF540Q8NDQ6 LANCL1-204ENST00000441020 4503 ntAPPRIS P1 TSL 5 BASIC4.63□□□□□ -1.67
ZNF540Q8NDQ6 FAM111B-202ENST00000411426 3344 ntTSL 4 BASIC4.63□□□□□ -1.67
ZNF540Q8NDQ6 AL353743.4-201ENST00000422653 1547 ntBASIC4.63□□□□□ -1.67
ZNF540Q8NDQ6 RASA1-205ENST00000512763 3060 ntAPPRIS ALT2 TSL 2 BASIC4.63□□□□□ -1.67
ZNF540Q8NDQ6 EXTL2-201ENST00000370113 2835 ntAPPRIS P1 TSL 1 (best) BASIC4.63□□□□□ -1.67
ZNF540Q8NDQ6 FDCSP-201ENST00000317987 566 ntAPPRIS P1 TSL 1 (best) BASIC4.63□□□□□ -1.67
ZNF540Q8NDQ6 LINC01317-201ENST00000366209 779 ntTSL 5 BASIC4.63□□□□□ -1.67
ZNF540Q8NDQ6 MIR105-1-201ENST00000385222 81 ntBASIC4.63□□□□□ -1.67
ZNF540Q8NDQ6 IL6-203ENST00000401651 539 ntTSL 2 BASIC4.63□□□□□ -1.67
ZNF540Q8NDQ6 AL133270.1-201ENST00000402635 279 ntBASIC4.63□□□□□ -1.67
ZNF540Q8NDQ6 AP000580.1-201ENST00000404439 358 ntBASIC4.63□□□□□ -1.67
ZNF540Q8NDQ6 AL390774.1-201ENST00000411924 246 ntBASIC4.63□□□□□ -1.67
ZNF540Q8NDQ6 AC012506.4-201ENST00000421563 541 ntTSL 4 BASIC4.63□□□□□ -1.67
ZNF540Q8NDQ6 AL132796.1-201ENST00000421617 479 ntTSL 3 BASIC4.63□□□□□ -1.67
ZNF540Q8NDQ6 AL031736.2-201ENST00000426573 787 ntBASIC4.63□□□□□ -1.67
ZNF540Q8NDQ6 LINC00458-202ENST00000427299 1030 ntTSL 1 (best) BASIC4.63□□□□□ -1.67
ZNF540Q8NDQ6 MKLN1-204ENST00000429546 572 ntTSL 4 BASIC4.63□□□□□ -1.67
ZNF540Q8NDQ6 FAM107B-218ENST00000479731 570 ntAPPRIS P1 TSL 3 BASIC4.63□□□□□ -1.67
ZNF540Q8NDQ6 CSN1S1-203ENST00000507763 597 ntAPPRIS ALT2 TSL 5 BASIC4.63□□□□□ -1.67
ZNF540Q8NDQ6 AC005699.1-205ENST00000510639 427 ntTSL 2 BASIC4.63□□□□□ -1.67
ZNF540Q8NDQ6 AZIN1-AS1-203ENST00000517996 756 ntTSL 3 BASIC4.63□□□□□ -1.67
ZNF540Q8NDQ6 IGHVIII-2-1-201ENST00000518843 291 ntBASIC4.63□□□□□ -1.67
ZNF540Q8NDQ6 RPL26L1-203ENST00000519239 679 ntAPPRIS P1 TSL 2 BASIC4.63□□□□□ -1.67
ZNF540Q8NDQ6 AC090572.2-201ENST00000520649 761 ntTSL 3 BASIC4.63□□□□□ -1.67
ZNF540Q8NDQ6 AC008641.1-201ENST00000523781 248 ntTSL 3 BASIC4.63□□□□□ -1.67
ZNF540Q8NDQ6 MS4A6A-210ENST00000529054 1160 ntTSL 5 BASIC4.63□□□□□ -1.67
ZNF540Q8NDQ6 TRAV11-201ENST00000539512 339 ntBASIC4.63□□□□□ -1.67
ZNF540Q8NDQ6 DEFB109F-202ENST00000542600 509 ntTSL 2 BASIC4.63□□□□□ -1.67
ZNF540Q8NDQ6 C8orf59-206ENST00000545322 491 ntTSL 3 BASIC4.63□□□□□ -1.67
ZNF540Q8NDQ6 BLZF2P-201ENST00000553776 1130 ntBASIC4.63□□□□□ -1.67
ZNF540Q8NDQ6 AC116553.2-201ENST00000564203 463 ntBASIC4.63□□□□□ -1.67
ZNF540Q8NDQ6 AP001542.1-201ENST00000591314 200 ntBASIC4.63□□□□□ -1.67
ZNF540Q8NDQ6 AC011473.1-201ENST00000601280 443 ntTSL 2 BASIC4.63□□□□□ -1.67
ZNF540Q8NDQ6 AC073111.2-201ENST00000605657 1075 ntBASIC4.63□□□□□ -1.67
ZNF540Q8NDQ6 AC000068.2-201ENST00000608816 460 ntBASIC4.63□□□□□ -1.67
ZNF540Q8NDQ6 AC009163.6-201ENST00000612367 342 ntBASIC4.63□□□□□ -1.67
ZNF540Q8NDQ6 AC009093.5-201ENST00000620963 359 ntTSL 2 BASIC4.63□□□□□ -1.67
ZNF540Q8NDQ6 AC136428.4-201ENST00000634254 1155 ntBASIC4.63□□□□□ -1.67
Retrieved 100 of 98,524 protein–RNA pairs in 73.8 ms