Protein–RNA interactions for Protein: Q3V6T2

CCDC88A, Girdin, humanhuman

Predictions only

Length 1,871 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88AQ3V6T2 CDK14-201ENST00000265741 4953 ntTSL 1 (best) BASIC5.48□□□□□ -1.53
CCDC88AQ3V6T2 LRRC9-202ENST00000445360 4717 ntAPPRIS P1 TSL 5 BASIC5.48□□□□□ -1.53
CCDC88AQ3V6T2 RALGAPB-202ENST00000397040 8435 ntAPPRIS P3 TSL 1 (best) BASIC5.48□□□□□ -1.53
CCDC88AQ3V6T2 LINC02141-201ENST00000568279 6586 ntTSL 1 (best) BASIC5.48□□□□□ -1.53
CCDC88AQ3V6T2 GRIK2-204ENST00000369137 4272 ntTSL 5 BASIC5.48□□□□□ -1.53
CCDC88AQ3V6T2 CPHL1P-201ENST00000461341 3407 ntBASIC5.48□□□□□ -1.53
CCDC88AQ3V6T2 PUS7L-203ENST00000431332 1873 ntTSL 2 BASIC5.47□□□□□ -1.53
CCDC88AQ3V6T2 PTMAP2-201ENST00000397627 327 ntBASIC5.47□□□□□ -1.53
CCDC88AQ3V6T2 AL035696.2-201ENST00000407941 709 ntBASIC5.47□□□□□ -1.53
CCDC88AQ3V6T2 AF240627.1-201ENST00000416002 879 ntTSL 3 BASIC5.47□□□□□ -1.53
CCDC88AQ3V6T2 RC3H1-IT1-201ENST00000421851 448 ntTSL 5 BASIC5.47□□□□□ -1.53
CCDC88AQ3V6T2 AC007389.2-201ENST00000434630 306 ntBASIC5.47□□□□□ -1.53
CCDC88AQ3V6T2 AC073284.1-201ENST00000448086 404 ntTSL 3 BASIC5.47□□□□□ -1.53
CCDC88AQ3V6T2 AC000124.1-201ENST00000448311 957 ntTSL 2 BASIC5.47□□□□□ -1.53
CCDC88AQ3V6T2 RPL29-203ENST00000475248 551 ntAPPRIS P1 TSL 3 BASIC5.47□□□□□ -1.53
CCDC88AQ3V6T2 AL132838.2-201ENST00000492041 314 ntBASIC5.47□□□□□ -1.53
CCDC88AQ3V6T2 AP003730.1-201ENST00000524605 285 ntBASIC5.47□□□□□ -1.53
CCDC88AQ3V6T2 AC073651.3-201ENST00000545999 417 ntTSL 3 BASIC5.47□□□□□ -1.53
CCDC88AQ3V6T2 AC074237.1-201ENST00000577674 471 ntTSL 3 BASIC5.47□□□□□ -1.53
CCDC88AQ3V6T2 MAGI2-AS3-224ENST00000619135 205 ntTSL 5 BASIC5.47□□□□□ -1.53
CCDC88AQ3V6T2 AC138965.3-201ENST00000623875 498 ntBASIC5.47□□□□□ -1.53
CCDC88AQ3V6T2 MYO16-201ENST00000251041 3492 ntTSL 5 BASIC5.47□□□□□ -1.53
CCDC88AQ3V6T2 AC000374.1-201ENST00000434698 1745 ntBASIC5.47□□□□□ -1.53
CCDC88AQ3V6T2 WDR12-201ENST00000261015 8100 ntAPPRIS P1 TSL 1 (best) BASIC5.47□□□□□ -1.53
CCDC88AQ3V6T2 TJP1-209ENST00000545208 5007 ntAPPRIS ALT2 TSL 5 BASIC5.47□□□□□ -1.53
CCDC88AQ3V6T2 SLFN13-201ENST00000285013 8469 ntAPPRIS P1 TSL 1 (best) BASIC5.47□□□□□ -1.53
CCDC88AQ3V6T2 ADAM29-214ENST00000618444 2949 ntAPPRIS P1 TSL 4 BASIC5.47□□□□□ -1.53
CCDC88AQ3V6T2 RPGRIP1L-212ENST00000621565 6038 ntAPPRIS ALT1 TSL 1 (best) BASIC5.47□□□□□ -1.53
CCDC88AQ3V6T2 DNAH8-201ENST00000327475 14360 ntAPPRIS P2 TSL 5 BASIC5.47□□□□□ -1.53
CCDC88AQ3V6T2 MGC32805-205ENST00000510972 1424 ntTSL 1 (best) BASIC5.47□□□□□ -1.53
CCDC88AQ3V6T2 ELF1-204ENST00000625359 2032 ntTSL 2 BASIC5.47□□□□□ -1.53
CCDC88AQ3V6T2 GOLPH3L-201ENST00000271732 2999 ntAPPRIS P1 TSL 1 (best) BASIC5.47□□□□□ -1.53
CCDC88AQ3V6T2 SDHCP2-201ENST00000398565 501 ntBASIC5.47□□□□□ -1.53
CCDC88AQ3V6T2 RPL7P2-201ENST00000427639 268 ntBASIC5.47□□□□□ -1.53
CCDC88AQ3V6T2 AL691515.1-201ENST00000432976 733 ntTSL 2 BASIC5.47□□□□□ -1.53
CCDC88AQ3V6T2 TBCAP1-201ENST00000436520 327 ntBASIC5.47□□□□□ -1.53
CCDC88AQ3V6T2 H2AFZP5-201ENST00000446960 382 ntBASIC5.47□□□□□ -1.53
CCDC88AQ3V6T2 AC016746.1-201ENST00000489557 831 ntTSL 2 BASIC5.47□□□□□ -1.53
CCDC88AQ3V6T2 LINC01088-208ENST00000511895 795 ntTSL 2 BASIC5.47□□□□□ -1.53
CCDC88AQ3V6T2 PWRN1-202ENST00000562501 642 ntTSL 3 BASIC5.47□□□□□ -1.53
CCDC88AQ3V6T2 IPO5P1-202ENST00000600039 287 ntBASIC5.47□□□□□ -1.53
CCDC88AQ3V6T2 AL160281.1-201ENST00000605307 311 ntBASIC5.47□□□□□ -1.53
CCDC88AQ3V6T2 LAMTOR5-AS1-217ENST00000608152 407 ntTSL 5 BASIC5.47□□□□□ -1.53
CCDC88AQ3V6T2 LAMTOR5-AS1-227ENST00000609653 457 ntTSL 2 BASIC5.47□□□□□ -1.53
CCDC88AQ3V6T2 uc_338.13-201ENST00000618243 179 ntBASIC5.47□□□□□ -1.53
CCDC88AQ3V6T2 PRKACB-208ENST00000394839 4200 ntTSL 2 BASIC5.47□□□□□ -1.53
CCDC88AQ3V6T2 C12orf60-201ENST00000330828 1684 ntAPPRIS P1 TSL 1 (best) BASIC5.47□□□□□ -1.53
CCDC88AQ3V6T2 ABCA10-201ENST00000269081 6362 ntAPPRIS P1 TSL 1 (best) BASIC5.47□□□□□ -1.53
CCDC88AQ3V6T2 ALB-201ENST00000295897 2263 ntAPPRIS P1 TSL 1 (best) BASIC5.46□□□□□ -1.53
CCDC88AQ3V6T2 MRRF-208ENST00000394315 1501 ntTSL 1 (best) BASIC5.46□□□□□ -1.53
CCDC88AQ3V6T2 TET2-202ENST00000305737 9233 ntTSL 1 (best) BASIC5.46□□□□□ -1.53
CCDC88AQ3V6T2 ASB5-201ENST00000296525 3031 ntAPPRIS P1 TSL 1 (best) BASIC5.46□□□□□ -1.53
CCDC88AQ3V6T2 ATF7IP-214ENST00000540793 4142 ntAPPRIS P3 TSL 1 (best) BASIC5.46□□□□□ -1.53
CCDC88AQ3V6T2 CFHR3-206ENST00000617219 1462 ntTSL 5 BASIC5.46□□□□□ -1.54
CCDC88AQ3V6T2 WFDC6-202ENST00000372670 620 ntTSL 1 (best) BASIC5.46□□□□□ -1.54
CCDC88AQ3V6T2 OR2B3-201ENST00000377173 1106 ntAPPRIS P1 BASIC5.46□□□□□ -1.54
CCDC88AQ3V6T2 RPL37P1-201ENST00000432310 284 ntBASIC5.46□□□□□ -1.54
CCDC88AQ3V6T2 AC105398.1-201ENST00000446073 402 ntTSL 5 BASIC5.46□□□□□ -1.54
CCDC88AQ3V6T2 ZCCHC10-206ENST00000509008 608 ntAPPRIS ALT2 TSL 2 BASIC5.46□□□□□ -1.54
CCDC88AQ3V6T2 ZCCHC10-209ENST00000513541 794 ntAPPRIS ALT2 TSL 2 BASIC5.46□□□□□ -1.54
CCDC88AQ3V6T2 AC138832.1-201ENST00000522871 556 ntBASIC5.46□□□□□ -1.54
CCDC88AQ3V6T2 OR4A2P-201ENST00000527276 913 ntBASIC5.46□□□□□ -1.54
CCDC88AQ3V6T2 AL049779.1-201ENST00000553306 670 ntTSL 2 BASIC5.46□□□□□ -1.54
CCDC88AQ3V6T2 AC084757.4-201ENST00000616350 526 ntBASIC5.46□□□□□ -1.54
CCDC88AQ3V6T2 PIGN-245ENST00000640252 7924 ntAPPRIS P1 TSL 1 (best) BASIC5.46□□□□□ -1.54
CCDC88AQ3V6T2 LYRM2-208ENST00000523377 5353 ntAPPRIS P1 TSL 1 (best) BASIC5.46□□□□□ -1.54
CCDC88AQ3V6T2 PCDH15-214ENST00000395446 3948 ntTSL 5 BASIC5.46□□□□□ -1.54
CCDC88AQ3V6T2 ESRRG-208ENST00000391890 5542 ntAPPRIS P1 TSL 5 BASIC5.46□□□□□ -1.54
CCDC88AQ3V6T2 STIL-204ENST00000396221 4558 ntAPPRIS ALT2 TSL 1 (best) BASIC5.46□□□□□ -1.54
CCDC88AQ3V6T2 IKZF2-207ENST00000434687 3888 ntAPPRIS P2 TSL 5 BASIC5.45□□□□□ -1.54
CCDC88AQ3V6T2 MYBPC1-204ENST00000452455 3861 ntAPPRIS ALT2 TSL 2 BASIC5.45□□□□□ -1.54
CCDC88AQ3V6T2 AL133284.1-201ENST00000423715 4996 ntTSL 1 (best) BASIC5.45□□□□□ -1.54
CCDC88AQ3V6T2 RNMT-209ENST00000592764 4108 ntTSL 2 BASIC5.45□□□□□ -1.54
CCDC88AQ3V6T2 FKBP7-204ENST00000424785 2834 ntAPPRIS P3 TSL 1 (best) BASIC5.45□□□□□ -1.54
CCDC88AQ3V6T2 BPY2-202ENST00000382585 321 ntAPPRIS P5 TSL 1 (best) BASIC5.45□□□□□ -1.54
CCDC88AQ3V6T2 AC019064.1-201ENST00000414796 499 ntTSL 2 BASIC5.45□□□□□ -1.54
CCDC88AQ3V6T2 AL136099.1-201ENST00000436492 557 ntTSL 3 BASIC5.45□□□□□ -1.54
CCDC88AQ3V6T2 RNA5SP303-201ENST00000516192 130 ntBASIC5.45□□□□□ -1.54
CCDC88AQ3V6T2 AL357172.1-201ENST00000556016 593 ntTSL 3 BASIC5.45□□□□□ -1.54
CCDC88AQ3V6T2 AC087499.8-201ENST00000578406 226 ntBASIC5.45□□□□□ -1.54
CCDC88AQ3V6T2 RPS4XP16-203ENST00000596904 698 ntTSL 5 BASIC5.45□□□□□ -1.54
CCDC88AQ3V6T2 RNU4-89P-201ENST00000607443 133 ntBASIC5.45□□□□□ -1.54
CCDC88AQ3V6T2 AC243829.4-202ENST00000610845 410 ntTSL 5 BASIC5.45□□□□□ -1.54
CCDC88AQ3V6T2 BPY2B-204ENST00000615850 321 ntAPPRIS P5 TSL 1 (best) BASIC5.45□□□□□ -1.54
CCDC88AQ3V6T2 BPY2C-204ENST00000618574 321 ntAPPRIS P5 TSL 1 (best) BASIC5.45□□□□□ -1.54
CCDC88AQ3V6T2 RDH10-AS1-201ENST00000514599 3261 ntTSL 2 BASIC5.45□□□□□ -1.54
CCDC88AQ3V6T2 CYP3A43-204ENST00000354829 1709 ntAPPRIS ALT1 TSL 1 (best) BASIC5.45□□□□□ -1.54
CCDC88AQ3V6T2 PATJ-213ENST00000613764 4172 ntTSL 5 BASIC5.45□□□□□ -1.54
CCDC88AQ3V6T2 POU2F1-202ENST00000367862 14038 ntAPPRIS ALT2 TSL 1 (best) BASIC5.45□□□□□ -1.54
CCDC88AQ3V6T2 ANAPC1P1-201ENST00000426186 2145 ntBASIC5.45□□□□□ -1.54
CCDC88AQ3V6T2 LINC02389-201ENST00000535058 3546 ntTSL 2 BASIC5.45□□□□□ -1.54
CCDC88AQ3V6T2 ZNF285-204ENST00000591679 2388 ntAPPRIS ALT2 TSL 4 BASIC5.45□□□□□ -1.54
CCDC88AQ3V6T2 MYB-239ENST00000534121 2238 ntTSL 1 (best) BASIC5.45□□□□□ -1.54
CCDC88AQ3V6T2 ZNF445-201ENST00000396077 18299 ntAPPRIS P1 TSL 1 (best) BASIC5.45□□□□□ -1.54
CCDC88AQ3V6T2 AL445584.1-201ENST00000431451 330 ntBASIC5.45□□□□□ -1.54
CCDC88AQ3V6T2 AL121872.1-202ENST00000435867 308 ntTSL 5 BASIC5.45□□□□□ -1.54
CCDC88AQ3V6T2 PTMAP3-201ENST00000447474 330 ntBASIC5.45□□□□□ -1.54
CCDC88AQ3V6T2 Z99127.1-201ENST00000452442 670 ntTSL 5 BASIC5.45□□□□□ -1.54
CCDC88AQ3V6T2 SETP4-201ENST00000455717 868 ntBASIC5.45□□□□□ -1.54
CCDC88AQ3V6T2 AL591473.1-201ENST00000464297 313 ntBASIC5.45□□□□□ -1.54
Retrieved 100 of 98,524 protein–RNA pairs in 80.4 ms